KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:40 2014 Check: 00 .. Name: ENSP00000255078/1-993 Len: 1027 Check: 9105 Weight: 1.00 Name: ENSTTRP00000012938/1-980 Len: 1027 Check: 6805 Weight: 1.00 Name: ENSBTAP00000041982/1-981 Len: 1027 Check: 1359 Weight: 1.00 Name: bmy_17675T0/1-945 Len: 1027 Check: 2264 Weight: 1.00 Name: BACU003563/1-982 Len: 1027 Check: 6446 Weight: 1.00 // 1 50 ENSP00000255078/1-993 MASAAVESFV TKQLDLLELE RDAEVEERRS WQENISLKEL QSRGVCLLKL ENSTTRP00000012938/1-980 MASATVESFV NKQLDLLALE RDAEVEERRS WQESVSPKEL QSRGVCLLKL ENSBTAP00000041982/1-981 MASTPVESFV TKQLELLELE RDAEVEERRS WQENVSLKEL QSRGVCLLKL bmy_17675T0/1-945 MASAAVESFV TKQLDLLELE RDAEVEERRS WQENVSLKEL QSRGVCLLKL BACU003563/1-982 MASAAVESFV TKQLDLLELE RDAEVEERRS WQENVSLKEL QSRGVCLLKL 51 100 ENSP00000255078/1-993 QVSSQRTGLY GRLLVTFEPR RYGSAAALPS NSFTSGDIVG LYDAANEGSQ ENSTTRP00000012938/1-980 QVSSQRTGLY GRLLVTFEPR RCMSAAVLPS NSFISGDIVG LYE---EDSQ ENSBTAP00000041982/1-981 QVSSQRTGLY GRLLITLEPR RCVSAAVLPS NSFTSGDIVG LYD---ESGQ bmy_17675T0/1-945 RVSSQRTGLY GRLLVTFEPR RCISAAVLPS NSFTSGDIVG LYE---EDSQ BACU003563/1-982 QVSSQRTGMY GRLLVTFEPR RCISAAVLPS NSFTSGDIVG LYE---EDSQ 101 150 ENSP00000255078/1-993 LATGILTRVT QKSVTVAFDE SHDFQLSLDR ENSYRLLKLA NDVTYRRLKK ENSTTRP00000012938/1-980 LATGILTRIT QQWVTVAFDE SHDLQLSLDQ EHSYRLLKLA NDVTYKRLKK ENSBTAP00000041982/1-981 LATGILTRIT QKAVTVAFDE SHDSQLSLDQ EHSYRLLKLA NDVTYKRLKK bmy_17675T0/1-945 LATGILTRIT QKLVTVAFDE SHDFQLSLDR EHSYRLLKLA NDITYKRLKK BACU003563/1-982 LATGILTRIT QKLVTVAFDE SHDFQLSLDR EHSYRLLKLA NDITYKRLKK 151 200 ENSP00000255078/1-993 ALIALKKYHS GPASSLIEVL FGRSAPSPAS EIH------- ---------- ENSTTRP00000012938/1-980 TLITLKKYHS GPASSLTEVL FGGSDPSPAS EIP------- ---------- ENSBTAP00000041982/1-981 ALISLKKHHA GPASSLIEVL FGASDPSPPS EMP------- ---------- bmy_17675T0/1-945 TLITLKKYHS GPASSLTEVL FGGSDPSPAS EIPRISVGTR GVRGGERRVT BACU003563/1-982 TLITLKKYHS GPASSLTEVL FGGSDPSPAS EIP------- ---------- 201 250 ENSP00000255078/1-993 ---------- --PLTFFNTC LDTSQKEAVL FALSQKELAI IHGPPGTGKT ENSTTRP00000012938/1-980 ---------- --PLTFYNAT LDASQQEAVW FALSQKELAI IHGPPGTGKT ENSBTAP00000041982/1-981 ---------- --PLTFCNPA LDASQQEAVL FALSQKELAI IHGPPGTGKT bmy_17675T0/1-945 GSWSLTVACS XAPLTFYNAT LDASQQEAVW FALSQKELAI IHGPPGTGKT BACU003563/1-982 ---------- --PLTFYNAT LDASQQEAVW FALSQKELAI IHGPPGTGKT 251 300 ENSP00000255078/1-993 TTVVEIILQA VKQGLKVLCC APSNIAVDNL VERLALCKQR ILRLGHPARL ENSTTRP00000012938/1-980 TTVVEIILQA VKQGSKXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041982/1-981 TTVVEIILQA VKRGSKVLCC APSNVAVDNL VERLAQWKQR ILRLGHPARL bmy_17675T0/1-945 TTVVEIILQA VKQGSKVLCC APSNIAVDNL VEQLAQWKQR LLRLGHPARL BACU003563/1-982 TTVVEIILQA VKQGSKVLCC APSNIAVDNL VEQLAQWKQR LLRLGHPARL 301 350 ENSP00000255078/1-993 LESIQQHSLD AVLARSDSAQ IVADIRKDID QVFVKNKKTQ DKREKSNFRN ENSTTRP00000012938/1-980 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041982/1-981 LDSIQQHSLD AVLARSDSAR IVADIRRDID QAWAKNRKTQ DKREKSNFRD bmy_17675T0/1-945 LESVQQHSLD AVLARGDGTR IVADIRKDID QVLAKSKKTQ DKREKS---- BACU003563/1-982 LESVQQHSLD AVLARGDGTR IVADVRRDID QVLAKSKKTQ DKREKSNFRN 351 400 ENSP00000255078/1-993 EIKLLRKELK EREEAAMLES LTSANVVLAT NTGASADGPL KLLPESYFDV ENSTTRP00000012938/1-980 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXASSDGPL KLLPEGHFDM ENSBTAP00000041982/1-981 EIKLLRKELK DREEAAMLES LAAASVVLAT NTGASADGPL KLLPDSHFDM bmy_17675T0/1-945 ---------- ---------- ---------- ---ASSDGPL KLLPDGHFDM BACU003563/1-982 EIKLLRKELK EREEAAMLES LVAANVVLAT NTGASSDGPL KLLPDGHFDM 401 450 ENSP00000255078/1-993 VVIDECAQAL EASCWIPLLK ARKCILAGDH KQLPPTTVSH KAALAGLSLS ENSTTRP00000012938/1-980 VVIDECAQAL EASCWIPLLK ARKCVLAGDH RQLPPTIFSH KAALAGLSLS ENSBTAP00000041982/1-981 VVIDECAQAL EASCWIPLLK ARKCILAGDH KQLPPTIVSH KAALAGLSLS bmy_17675T0/1-945 VVIDECAQAL EASCWIPLLK ARKCVLAGDH KQLPPTIISH KAAQAGLSLS BACU003563/1-982 VVIDECAQAL EASCWIPLLK ARKCVLAGDH KQLPPTIISH KAAQAGLSLS 451 500 ENSP00000255078/1-993 LMERLAEEYG ARVVRTLTVQ YRMHQAIMRW ASDTMYLGQL TAHSSVARHL ENSTTRP00000012938/1-980 LMERLAEGHG ARSVRMLSVQ YRMHQAIARW ASEALYHGQL TTHPSVAGRL ENSBTAP00000041982/1-981 LMERLAERHG AGALRMLTVQ YRMHQAIARW ASEALYHGQL TAHPSVAGHL bmy_17675T0/1-945 LMERLAEGHG ARSVRMLSVQ YRMHQAIACW ASEALYHGQL TTHPSVAGHL BACU003563/1-982 LMERLAEGHG ARSVRMLGVQ YRMHRAIARW ASEALYQGQL TTHPSVAGHL 501 550 ENSP00000255078/1-993 LRDLPGVAAT EETGVPLLLV DTAGCGLFEL EEEDEQSKGN PGEVRLVSLH ENSTTRP00000012938/1-980 LRDLPGVAAT EETGVPLLLL DTAGCGLFEL EDEDEQSKGN PGEVRLVSLH ENSBTAP00000041982/1-981 LRDLPGVAAT EETGVPLLLV DTAGCGLLEL EEDDEQSKGN PGEVRLVGLH bmy_17675T0/1-945 LRDLPGVAAT EETGVPLLLV DTAGCGLFEL EDEDEQSKGN PGEVRLVSLH BACU003563/1-982 LRDLPGVAAT EETGVPLLLV DTAGCGLFEL EDEDEQSKGN PGEVRLVSLH 551 600 ENSP00000255078/1-993 IQALVDAGVP ARDIAVVSPY NLQVDLLRQS LVHRHPELEI KSVDGFQGRE ENSTTRP00000012938/1-980 VQALVDAGVQ AGDIAIITPY NLQVDLLRQS LTHRHPELEI KSVDGFQGRE ENSBTAP00000041982/1-981 VQALVDAGVR AADIAVITPY NLQVDLLRQS LAHRLPELEI RSVDGFQGRE bmy_17675T0/1-945 VQALVDAGVQ AGDIAIITPY NLQC------ ---------- -----LCAPE BACU003563/1-982 VQALVDAGVQ AGDIAIITPY NLQVDLLRES LTHRHPELEI KSVDGFQGRE 601 650 ENSP00000255078/1-993 KEAVILSFVR SNRKGEVGFL AEDRRINVAV TRARRHVAVI CDSRTVNNHA ENSTTRP00000012938/1-980 KEAVILSFVR SNRKGEVGFL AENRRVNVAV TRARRHVAVV CDSHTVSSHA ENSBTAP00000041982/1-981 KEAVILSFVR SNRKGEVGFL AEDRRINVAV TRARRHVAVV CDSRTVSNHA bmy_17675T0/1-945 TKPACF---- ----GEVGFL AENRRINVAV TRARRHVAIV CDSRTVNSHA BACU003563/1-982 KEAVILSFVR SNRKGEVGFL AENRRINVAV TRARRHVAVV CDSRTVNSHA 651 700 ENSP00000255078/1-993 FLKTLVEYFT QHGEVRTAFE YLDDIVPENY SHENSQGSSH AATKPQGPAT ENSTTRP00000012938/1-980 FLKTLVDYFT EHGEVRTAFE YLDDIVPENY SREGAQGPGQ ADVKTRGSAA ENSBTAP00000041982/1-981 FLKTLVDYLT EHGEVRTAFE YLDDIVPENY SHEGAQ---- AGGKPRGSAA bmy_17675T0/1-945 FLKTLVDYFT EHGEVRTAFE YLDDIVPENY SREGAQGPGQ AGAKPRGSAA BACU003563/1-982 FLKTLVDYFT EHGEVRTAFE YLDDIVPENY SREGAQGPGQ AGAKPRGSAA 701 750 ENSP00000255078/1-993 STRTGSQRQE GGQEAAAPAR QGRKKPAGKS L-ASEAPSQP SLNGGSP-EG ENSTTRP00000012938/1-980 TARGSR---- --EQAAHGAA LGRKKPGTAP L-SSEAQPQL SLNGGGR-EG ENSBTAP00000041982/1-981 TARRAP---- -GGTRP---- -GRKKPSGAP LGSSEPQPQP SLNGGGGWEG bmy_17675T0/1-945 TARRAP---- -GSRRPTGAA LGRKKPGTAP L-SSEAQPQP SLNGGGR-EG BACU003563/1-982 TARRAP---- -GSRRPTGAA LGRKKPGTAP L-SSEAQPQP SLNGGGR-EG 751 800 ENSP00000255078/1-993 VESQDGVDHF RAMIVEFMAS KKMQLEFPPS LNSHDRLRVH QIAEEHGLRH ENSTTRP00000012938/1-980 ARSRDGAEQF RAVITEFVAS EKTQLEFPAS LDSQDRMWVH QIAEEYGLRH ENSBTAP00000041982/1-981 AGSRDGADSF RAAIVEFVES EKTQLEFPAS LNPRDRLRVH QIAEEFGLRH bmy_17675T0/1-945 ARSRDGAEQF RAVIMEFVAS EKTQLEFPAS LDSLDRMWVH QIAEEYGLRH BACU003563/1-982 ARSREGAEQF RAVIMEFVAS EKTQLEFPAS LDSQDRMWVH QIAEEYGLRH 801 850 ENSP00000255078/1-993 DSSGEGKRRF ITVSKRAPRP RAALGPPAGT GGPAPLQPVP PTPAQTEQPP ENSTTRP00000012938/1-980 ESAGEGKERF ITVSKRVPR- PAAPATPAGP GSKAPLCPEP PSPAQAEPAI ENSBTAP00000041982/1-981 DSTGKGRERF ITVSKRPPPT PEAPPTPAGP DGRAPLRPET PSCKQPEPPV bmy_17675T0/1-945 ESAGEGKERF ITVSKRVPPA PAAPAPPAGP GSKAPLCPEP PSPAQTERPL BACU003563/1-982 ESAGEGKERF ITVSKRVPPA PAAPAPQAGA GSKAPLCPEP PSPAQTEPPI 851 900 ENSP00000255078/1-993 REQRGPDQPD LRTLHLERLQ RVRSAQGQPA --SKEQQASG QQKLPEKKKK ENSTTRP00000012938/1-980 GEQSSRGQPD LKALHLDRLQ RAGSQPE--- ---QRATGSG PRKLPEKKKK ENSBTAP00000041982/1-981 RDSSGRDQPD LKALHLEGLQ RAGAQQEQRA REGPRALGPA PRKLPEKKKK bmy_17675T0/1-945 GEQSSRGQPD LKALHPDGLQ RAGSQQE--- ---PRAAGSG PRKLAEKKKK BACU003563/1-982 GEQSSRGQPD LKALHLQRLQ RAGSQQE--- ---PRATGSG PRKLAEKKKK 901 950 ENSP00000255078/1-993 K-AKGHPATD LPTEEDFEAL VSAAVKADNT CGFAKCTAGV TTLGQFCQLC ENSTTRP00000012938/1-980 KEAEGPMAID LPAGEDFDAL VSAAIKADNT CGLAECTASV ITLGQLCLHC ENSBTAP00000041982/1-981 KDARGPAAIE LPAEEDFDAL VLAAIKADNT CGFAKCTASV VTLGQLCLHC bmy_17675T0/1-945 KEAEGPMTID LPAGEDFDAL VSAAIKADNT CGLAKCTASV VTLGQLCLHC BACU003563/1-982 KEAEGPMTID LPAGEDFDAL VSAAIKADNT CGLAKCTASV VTLGQLCLHC 951 1000 ENSP00000255078/1-993 SRRYCLSHHL PEIHGCGERA RAHARQRISR EGVLYAGSGT KNGSLDPAKR ENSTTRP00000012938/1-980 GRRYCLSHHL PEIHGCGERA RAHARQRISR EGVLYAGSGT KDRSLDPAKR ENSBTAP00000041982/1-981 GRRYCLSHHL PEVHGCGERA RAHARQRISR EGVLYPGSGT KDRSLDPAKR bmy_17675T0/1-945 SRRYCLSHHL PEIHGCGERA RAHARQRISR EGVLYAGSGT KDRSLDPAKR BACU003563/1-982 GRRYCLSHHL PEIHGCGERA RAHARQRISR EGVLYAGSGT KDRSLDPVKR 1001 1050 ENSP00000255078/1-993 AQLQRRLDKK LSELSNQRTS RRKERGT ENSTTRP00000012938/1-980 AQLQRRLDKK LDQLTGQRRG KRKEKGK ENSBTAP00000041982/1-981 AQLQRRLDKK LDELTGQRRS KRKEKGK bmy_17675T0/1-945 AQLQRRLDEK LDQLTGRRRG KRKETGK BACU003563/1-982 AQLQRRLDEK LDQLTGRRRG KRKETGK