KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:42 2014 Check: 00 .. Name: ENSP00000341483/1-567 Len: 632 Check: 6762 Weight: 1.00 Name: ENSBTAP00000042039/1-518 Len: 632 Check: 9300 Weight: 1.00 Name: ENSTTRP00000007123/1-544 Len: 632 Check: 2874 Weight: 1.00 Name: bmy_06928T0/1-597 Len: 632 Check: 6979 Weight: 1.00 Name: BACU002580/1-585 Len: 632 Check: 1054 Weight: 1.00 // 1 50 ENSP00000341483/1-567 MADLANE--- ---------E KPAIAPPVFV FQKDKGQKSP AEQKNLSDSG ENSBTAP00000042039/1-518 MADLANE--- ---------E KPAIAPPVFV FQKEKGQK-- ---------- ENSTTRP00000007123/1-544 MADLANE--- ---------E KPAIAPPVFV FQKDKGQKSS AEQKDLSDSG bmy_06928T0/1-597 MADLANEVLG GKTPIFLFAE KPAIAPPVFV FQKDKGQKSS AEQKDLSDSG BACU002580/1-585 ---------- ---------- ---------- ------SQSS AEQKDLSDSG 51 100 ENSP00000341483/1-567 EEPRGEAEAP HHGTGHPESA GEHALEPPAP AGASASTPPP PAPEAQLPPF ENSBTAP00000042039/1-518 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007123/1-544 EESRGEAEAP HHGTGHPESA GEHALELPAP ASASAS---- -APEAQLPPF bmy_06928T0/1-597 EEPRGEAEAP HHGTGHPESA GEHALELPAP ASASAS---- -APEAQLLPF BACU002580/1-585 EEPRGEAEAP HHGTGHPESA GEHALELPAP ASASAS---- -APEAQLLPF 101 150 ENSP00000341483/1-567 PRELAGRSAG GSSPEGGEDS DREDGNYCPP VKRERTSSLT QFPPSQS--- ENSBTAP00000042039/1-518 ------RSAG GSSPEGGEDS DREDGNYCPP VKRERTSSLT QFPPSQSVSK ENSTTRP00000007123/1-544 PRELAGKS-- --------DS DREDGNYCPP VKRERTSSLT QFPPSQS--- bmy_06928T0/1-597 PRELAGRSAG GSSPEGGEDS DREDGNYCPP VKRERTSSLT QFPPSQS--- BACU002580/1-585 PRELAGRSAG GSSPEGGEDS DREDGNYCPP VKRERTSSLT QFPPSQSVSK 151 200 ENSP00000341483/1-567 ---------- ---------- -EERSSGFRL KPPTLIHGQA PSAGLPSQKP ENSBTAP00000042039/1-518 NNVFMPSTFC EPSAGNSDSE PEEKSSGFRL KPPTLIHGQA PSAGLPSQKP ENSTTRP00000007123/1-544 ---------- ---------- -EEKSSGFRL KPPTLIHGQA PSAGLPSQKP bmy_06928T0/1-597 ---------- ---------- -EEKSSGFRL KPPTLIHGQA PSAGLPSQKP BACU002580/1-585 NNVFMPSTFC EPSAGNSDSE PEEKSSGFRL KPPTLIHGQA PSAGLPSQKP 201 250 ENSP00000341483/1-567 KEQQRSVLRP AVLQAPQPKA LSQTVPSSGT NGVSLPADCT GAVPAASPDT ENSBTAP00000042039/1-518 KEQQRSVLRP AVLQAPQPKA LSQTVPSSGT NGVSIPADCT GAATSALPDN ENSTTRP00000007123/1-544 KEQQRSVLRP AVLQAPQPKV LSQTVPSSGT NGVSVPADCP GAATSASPDN bmy_06928T0/1-597 KEQQRSVLRP AVLQAPQPKA LPQTVPSSGT NGVSVPADGP GAATSASPEN BACU002580/1-585 KEQQRSVLRP AVLQAPQPKA LSQTVPSSGT NGVSVPADGP GAATSASPEN 251 300 ENSP00000341483/1-567 AAWRSPSEAA DEVCALE-EK EPQKNESSNA SEEEACEKKD PATQQAFVFG ENSBTAP00000042039/1-518 PAQRSPS--- DETPALE--E KSQRNESSNA SEEENCEKKE QGAQQAFVFG ENSTTRP00000007123/1-544 PARRSPS--- DEAPALE-EK DLQKNESSSA S-EESCEKKE L-AQQAFVFG bmy_06928T0/1-597 PARRSPS--- DEAPALE-EK DSQKDESSSA P-EERCEKGE RAAQQAFVFG BACU002580/1-585 PARRSPS--- DEAPALEQEK DSQEDESSSA P-EEKREKRE LAAQQAFVFG 301 350 ENSP00000341483/1-567 QNLRDRVKLI NESVDEADME NAGHPSADTP TATNYFLQYI SSSLENSTNS ENSBTAP00000042039/1-518 QNLRDRVKLI NENTEVADME NAGHPSSETP AATNYFLQYI SSSLENATNS ENSTTRP00000007123/1-544 QNLRDRVKLI NENAEVVDME NAGHPSSEAP AATNYFLQYI SSSLESSANS bmy_06928T0/1-597 QNLRDRVKLI NENAEGVDME NAGHPSSEAP AATNYFLQYI SSSLESSANS BACU002580/1-585 QNLRDRVKLI NENAEVVDME NTGHPSSEAP AATNYFLQYI SSSLESSANS 351 400 ENSP00000341483/1-567 ADASSNKFVF GQNMSERVLS PPKLNEVSSD ANRENAAAES GSESSSQEAT ENSBTAP00000042039/1-518 ADAASSKFVF GQNMSERVLS PPKLNELSSD ANRENTAAES GSESSSQEAT ENSTTRP00000007123/1-544 ADAASSKFIF GQNMSERVLS PPKLNEVSPD ANRENTVAES GSESSSQEAT bmy_06928T0/1-597 ADATSSKFIF GQNMSERVLS PPKLNEVSPD ANRENTVAES GSESSSQEAT BACU002580/1-585 ADAASSKFIF GQNMSERVLS PPKLNEVSPD ANRENTVAES GSESSSQEAT 401 450 ENSP00000341483/1-567 PEK-----ES LAESAAAYTK ATARKCLLEK VEVITGEEAE SNVLQMQCKL ENSBTAP00000042039/1-518 PEK-----ES LAESAAAYTK ATARKCLLEK VEVITGEEAE SNVLQIQCKL ENSTTRP00000007123/1-544 PEK-----ES LAESAAAYTK ATARKCLLKV --VITGEXXX XXXXXIQCKL bmy_06928T0/1-597 PEKANNIAES LAESAAAYTK ATARKCLLEK VEVITGEEAE SNVLQIQCKL BACU002580/1-585 PEKANNIAES LAESAAAYTK ATARKCLLEK VEVITGEEAE SNVLQIQCKL 451 500 ENSP00000341483/1-567 FVFDKTSQSW VERGRGLLRL NDMASTDDGT LQSRL----- ---------- ENSBTAP00000042039/1-518 FVFDKTSQSW VERGRGLLRL NDMASTDDGT LQSRL----- ---------- ENSTTRP00000007123/1-544 FVFDKTSQSW VERGRGLLRL NDMASTDDGT LQSRL----- ---------- bmy_06928T0/1-597 FVFDKTSQSW VERGRGLLRL NDMASTDDGT LQSRLDCVCS RSGFVEGWGA BACU002580/1-585 FVFDKTSQSW VERGRGLLRL NDMASTDDGT LQSRLDCVCS RSGFVEGWGA 501 550 ENSP00000341483/1-567 --------VM RTQGSLRLIL NTKLWAQMQI DKASEKSIRI TAMDTEDQGV ENSBTAP00000042039/1-518 --------VM RTQGSLRLIL NTKLWAQMQM DKASEKSIRI TAMDTEDQGV ENSTTRP00000007123/1-544 --------VM RTQGSLRLIL NTKLWAQMQM DKASEKSIRI TAMDTEDQGV bmy_06928T0/1-597 GLMASLLAVM RTQGSLRLIL NTKLWAQMQM DKASEKSIRI TAMDTEDQGV BACU002580/1-585 ALTASLLAVM RTQGSLRLIL NTKLWAQMQM DKASEKSIRI TAMDTEDQGV 551 600 ENSP00000341483/1-567 KVFLISASSK DTGQLYAALH HRILALRSRV EQEQEAKMPA PEPGAAPSNE ENSBTAP00000042039/1-518 KVFLISASSK DTGQLYAALH HRILALRSRV EQEQEAKAPA PEPGTAPSN- ENSTTRP00000007123/1-544 KVFLISASSK DTGQLYAALH HRILALRSHV EQEQEARTPA PEPGAAPSN- bmy_06928T0/1-597 KVFLISASSK DTGQLYAALH HRILALRSRV EQEQEAKTPA PEPGAAPSN- BACU002580/1-585 KVFLISASSK DTGQLYAALH HRILALRSRV EQEQEAKTPA PEPGAAPSN- 601 650 ENSP00000341483/1-567 EDDSDDDDVL APSGATAAGA GDEGDGQTTG ST ENSBTAP00000042039/1-518 EDDSDDDDVL TPSGAPTGGA GDEGDGQTAG ST ENSTTRP00000007123/1-544 EDDSDDDDVL APSGATGGGA GDEGDGQTAG ST bmy_06928T0/1-597 EDDSDDDDVL APSGATGGGA GDEGDGQTAG ST BACU002580/1-585 EDDSDDDDVL APS-ASGGGA GDEGDGQTAG ST