KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:50 2014 Check: 00 .. Name: ENSTTRP00000013215/1-784 Len: 948 Check: 9342 Weight: 1.00 Name: ENSP00000355718/1-723 Len: 948 Check: 6711 Weight: 1.00 Name: bmy_15940T0/1-689 Len: 948 Check: 9370 Weight: 1.00 Name: BACU011694/1-879 Len: 948 Check: 3232 Weight: 1.00 Name: ENSBTAP00000042093/1-722 Len: 948 Check: 955 Weight: 1.00 // 1 50 ENSTTRP00000013215/1-784 GNSASERAGD GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355718/1-723 ---------M GSRCALALAV LSALL----- ---------- ---------- bmy_15940T0/1-689 ---------M GRRCALALAV LSALL----- ---------- ---------- BACU011694/1-879 ---------M GRRCALALAV LSALL----- ---------- ---------- ENSBTAP00000042093/1-722 ---------M GGRCALTLAV LSALL----- ---------- ---------- 51 100 ENSTTRP00000013215/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXGVFEL KLQEFV-KKG ENSP00000355718/1-723 ---------- ---------- ---------C QVWSSGVFEL KLQEFVNKKG bmy_15940T0/1-689 ---------- ---------- ---------C Q--------- ---------- BACU011694/1-879 ---------- ---------- ---------C QVWSSGVFEL KLQEFVNKKG ENSBTAP00000042093/1-722 ---------- ---------- ---------C QVWSSGVFEL KLQEFVNKKG 101 150 ENSTTRP00000013215/1-784 LLGNRNCCR- GAGPPPCACK TFIRVCLKHY QASVSLEPPC TYGSTVTPVL ENSP00000355718/1-723 LLGNRNCCRG GAGPPPCACR TFFRVCLKHY QASVSPEPPC TYGSAVTPVL bmy_15940T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU011694/1-879 LLGNRNCCRG GAGPPPCACR TFFRVCLKHY QASVSPEPPC TYGSAVTPVL ENSBTAP00000042093/1-722 LLGNRNCCRG GAGPPPCACR TFFRVCLKHY QASVSPEPPC TYGSAVTPVL 151 200 ENSTTRP00000013215/1-784 GVDSFSLPDG AGADTAFSNP IRFPFGFTWP GTFSLIIEVX XXXXXXXXXX ENSP00000355718/1-723 GVDSFSLPDG GGADSAFSNP IRFPFGFTWP GTFSLIIEA- LHTDSPDDLA bmy_15940T0/1-689 ---------- ---------- ---------- GTFSLIIEA- LHTDSPDDLA BACU011694/1-879 GVDSFSLPDG TGADPAFSNP IRFPFGFTWP GTFSLIIEA- LHTDSPDDLA ENSBTAP00000042093/1-722 GTDSFSLPDG AGADPAFSNP IRFPFGFTWP GTFSLIIEA- LHTDSPDDLA 201 250 ENSTTRP00000013215/1-784 XXNPERLISR LATQRHLTVG EEWSQDLHSS GRTDLKYSYR FVCDEHYYGE ENSP00000355718/1-723 TENPERLISR LATQRHLTVG EEWSQDLHSS GRTDLKYSYR FVCDEHYYGE bmy_15940T0/1-689 TENPERLISR LATQRHLTVG EEWSQDLHSS GRTDLKYSYR FVCDEHYFGE BACU011694/1-879 TENPERLISR LATQRHLTVG EEWSQDLHSS GRTDLKYSYR FVCDEHYFGE ENSBTAP00000042093/1-722 TENPERLISR LATQRHLAVG EEWSQDLHSS GRTDLKYSYR FVCDEHYFGE 251 300 ENSTTRP00000013215/1-784 GCSVFCRPRD DAFGHFTCGE RGEKVCNPGW KGQYCTEPIC LPGCDEQHGF ENSP00000355718/1-723 GCSVFCRPRD DAFGHFTCGE RGEKVCNPGW KGPYCTEPIC LPGCDEQHGF bmy_15940T0/1-689 GCSVFCRPRD DAFGHFTCGE RGEKVCNPGW KGQYCTEPIC LPGCDEQHGF BACU011694/1-879 GCSVFCRPRD DAFGHFTCGE RGEKVCNPGW KGQYCTEPIC LPGCDEQHGF ENSBTAP00000042093/1-722 GCSVFCRPRD DAFGHFTCGE RGEKVCNPGW KGQYCTEPIC LPGCDEQHGF 301 350 ENSTTRP00000013215/1-784 CDKPGECKCR VGWQGRYCDQ CIRYPGCLHG TCQQPWQCNC QEGWGGLFCN ENSP00000355718/1-723 CDKPGECKCR VGWQGRYCDE CIRYPGCLHG TCQQPWQCNC QEGWGGLFCN bmy_15940T0/1-689 CDKPGECKCR VGWQGRYCDQ CIRYPGCLHG TCQQPWQCNC QEGWGGLFCN BACU011694/1-879 CDKPGECKCR VGWQGRYCDQ CIRYPGCLHG TCQQPWQCNC QEGWGGLFCN ENSBTAP00000042093/1-722 CDKPGECKCR VGWQGRYCDQ CIRYPGCLHG TCRQPWQCNC QEGWGGLFCN 351 400 ENSTTRP00000013215/1-784 QDLNYCTHHK PCKNGATCTN TGQGSYTCSC RPGYTGANCE TEVDECSASP ENSP00000355718/1-723 QDLNYCTHHK PCKNGATCTN TGQGSYTCSC RPGYTGATCE LGIDECDPSP bmy_15940T0/1-689 QDLNYCTHHK PCKNGATCTN TGQGSYTCSC RPGYTGANCE TEVDECSASP BACU011694/1-879 QDLNYCTHHK PCKNGATCTN TGQGSYTCSC RPGYTGANCE TEVDECSASP ENSBTAP00000042093/1-722 QDLNYCTHHK PCRNGATCTN TGQGSYTCSC RPGYTGANCE TEVDECSAGP 401 450 ENSTTRP00000013215/1-784 CRNGGSCTDL ENSYSCTCPP GFYGRICELS AMVCADGPCF NGGXXXXXXX ENSP00000355718/1-723 CKNGGSCTDL ENSYSCTCPP GFYGKICELS AMTCADGPCF NGGRCSDSPD bmy_15940T0/1-689 CRNGGSCTDL ENSYSCTCPP GFYGRICELS AMVCADGPCF NGGRCSDNPK BACU011694/1-879 CRNGGSCTDL ENSYSCTCPP GFYGRICELS AMVCADGPCF NGGRCSDNPK ENSBTAP00000042093/1-722 CRNGGSCTDL ENSYSCTCPP GFYGRICELS AMVCADGPCF NGGRCSDNPE 451 500 ENSTTRP00000013215/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XAXXXXXXXX XXXXXXXXXX ENSP00000355718/1-723 GGYSCRCPVG YSGFNCEKKI DYCSSSPCSN GAKCVDLGDA YLCRCQAGFS bmy_15940T0/1-689 GGYTCRCPGG FSGFNCEKKM DSCSSSPCSN GAQCVDLGDA YVCRCQAGFS BACU011694/1-879 GGYTCRCPGG FSGFNCEKKM DSCSSSPCSN GAQCVDLGDA YVCRCQAGFS ENSBTAP00000042093/1-722 GGYTCRCPGG FSGFNCEKKT DSCSSSPCSN GAQCVDLGDA YACRCQAGFS 501 550 ENSTTRP00000013215/1-784 XXXXXXXXXD CASSPCANGG TCRDGVNEYS CTCPPGYTGT NCSAPVSRCE ENSP00000355718/1-723 GRHCDDNVDD CASSPCANGG TCRDGVNDFS CTCPPGYTGR NCSAPVSRCE bmy_15940T0/1-689 GRHCDDNVDD CASSPCANGG TCRDGVNEYS CTCPPGYTGR NCSAPISRCE BACU011694/1-879 GRHCDDNLDD CASSPCANGG TCRDGANEYS CTCPPGYTGR NCSAPVSRCE ENSBTAP00000042093/1-722 GRHCDNNVDD CASSPCAHGG TCRDGVNEYS CTCPPGYTGR NCSAPVSRCE 551 600 ENSTTRP00000013215/1-784 HAPCHNGATC HERALRYLCE CARGYGGPNC QFLLPELPPG PVVVDLTEKY ENSP00000355718/1-723 HAPCHNGATC HERGHRYVCE CARGYGGPNC QFLLPELPPG PAVVDLTEK- bmy_15940T0/1-689 HAPCHNGATC HERALRYLCE CARGYGGPNC QFLLPELPPG PVVVDLTEQY BACU011694/1-879 HAPCHNGATC HERALRYLCE CARGYGGPNC QFLL---PPG PVVVDLTEQF ENSBTAP00000042093/1-722 HAPCHNGATC HERAFRYLCE CARGYGGPNC QFLLPEPPPG PVVVDLTEKY 601 650 ENSTTRP00000013215/1-784 VEGQAGAFPW VAVGAGAVLV LTLLLGCAAA VVCVRLRLQK RRPPADPCPG ENSP00000355718/1-723 LEGQGGPFPW VAVCAGVILV LMLLLGCAAV VVCVRLRLQK HRPPADPCRG bmy_15940T0/1-689 VEGQAGPFPW VAVGAGVVLV LTLLLGCAAA VVCVRLRLQK RRPPADPCPA BACU011694/1-879 AEGQAGPFPW VAVGAGVVLV LTLLLGCAAA VVCVRLRLQK RRPPADPCPA ENSBTAP00000042093/1-722 VEGQAGPFPW VAVGAGVLLV LTLLLGCAAT VVCVRLRLQK RRPPADPCRG 651 700 ENSTTRP00000013215/1-784 EAETMNNLAN RRREKDISVS VIGATQIKNT NKKVDLHTEP GTEKNSLKAC ENSP00000355718/1-723 ETETMNNLAN CQREKDISVS IIGATQIKNT NKKADFHGDH SADKNGFKAR bmy_15940T0/1-689 EAETMNNLAN RQREKDVSVS VIGATQIKNT NEKVDLHTEP GAEKNSLKAC BACU011694/1-879 EAETMNNLAN RQREKDISVS VIGAAQIKNT NKKVDLHTEP GTEKNSLKAC ENSBTAP00000042093/1-722 ETETMNNLAN RQREKDISVS VIGATQIKNT NKKADFHVEP GAEKNGLTAR 701 750 ENSTTRP00000013215/1-784 DPAVGYNLLQ DLKG-AAASG EPHSKRDAKS QPQGSAGEEK SAP-TLRGGE ENSP00000355718/1-723 YPAVDYNLVQ DLKGDDTAVR DAHSKRDTKC QPQGSSGEEK GTPTTLRGGE bmy_15940T0/1-689 GPAVGSKLLQ GRKG-AAAPG EPPSQRDAKC QPQGSAGEEK SAP-TLRGGE BACU011694/1-879 DPAVGYKLLQ GLKG-AAATG EPPSKRDAKC QPQGSAGEEK SAP-TLRGGE ENSBTAP00000042093/1-722 DSAVGCNLLQ GLKG-AAATA GPHSVRDAKG QPQGSAGEEK GTP-TLRGGE 751 800 ENSTTRP00000013215/1-784 AAERKRPDSV YSTSKDTKYQ SVYVISEEKD ECVIATEV-- ---------- ENSP00000355718/1-723 ASERKRPDSG CSTSKDTKYQ SVYVISEEKD ECVIATEV-- ---------- bmy_15940T0/1-689 AAERKRPDSV YSTSKDTKYQ SVYVISEEKD ECVIATEDKP HDTVAV---F BACU011694/1-879 AAERKRPDSV YSTSKDTKYQ SVYVISEEKD ECVIATERSA PATLAVGMRL ENSBTAP00000042093/1-722 ASERKRPDSV YSASKDTKYQ SVYVISEEQD ECVIATEV-- ---------- 801 850 ENSTTRP00000013215/1-784 ---------- ---------- ---------- ---------- ---------- ENSP00000355718/1-723 ---------- ---------- ---------- ---------- ---------- bmy_15940T0/1-689 VKAPSLR--- ---------- ---------- ---------- ---------L BACU011694/1-879 CTPPRLRDLA VTSRLLGRAA DREDPAGPPA GVPGLSQHCL SSGRPVAECV ENSBTAP00000042093/1-722 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000013215/1-784 ---------- ---------- ---------- ---------- ---------- ENSP00000355718/1-723 ---------- ---------- ---------- ---------- ---------- bmy_15940T0/1-689 RQLTSGTQRW VFFAGGSAAG ELGNTRRTEK QVGFAGLSSC LSPDGRVRW- BACU011694/1-879 RRLVEGLKHP LLRIWHLLIP HYGDYNLKRN GGGVPESASI LRGVLKPHCA ENSBTAP00000042093/1-722 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000013215/1-784 ---------- ---------- ---------- ---------- -------- ENSP00000355718/1-723 ---------- ---------- ---------- ---------- -------- bmy_15940T0/1-689 ---------- ---------- ---------- ---------- -------- BACU011694/1-879 QDPGQTVAAD RVEPGPGFQL DEVTTNKHTI VHCLQRAPLD LRVATRKG ENSBTAP00000042093/1-722 ---------- ---------- ---------- ---------- --------