KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:51 2014 Check: 00 .. Name: ENSP00000260408/1-748 Len: 748 Check: 823 Weight: 1.00 Name: ENSBTAP00000042110/1-748 Len: 748 Check: 2064 Weight: 1.00 Name: ENSTTRP00000004912/1-729 Len: 748 Check: 4353 Weight: 1.00 Name: bmy_17993T0/1-549 Len: 748 Check: 2219 Weight: 1.00 Name: BACU001012/1-420 Len: 748 Check: 7197 Weight: 1.00 // 1 50 ENSP00000260408/1-748 MVLLRVLILL LSWAAGMGGQ YGNPLNKYIR HYEGLSYNVD SLHQKHQRAK ENSBTAP00000042110/1-748 MVLLRVLILL LSWVAGLGGQ YGNPLNKYIR HYEGLSYDVD SLHQKHQRAK ENSTTRP00000004912/1-729 ---------- ---------Q YGNPLNKYIR HYEGLSYDVD SLHQKHQRAK bmy_17993T0/1-549 ---------- ---------- ---------- -----MLYIS EVGQVGKVKR BACU001012/1-420 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000260408/1-748 RAVSHEDQFL RLDFHAHGRH FNLRMKRDTS LFSDEFKVET SNKVLDYDTS ENSBTAP00000042110/1-748 RAVSHEDQFL RLDFHAHGRH FNLRMKRDTS LFSEEFRVET SNAVLDYDTS ENSTTRP00000004912/1-729 RAVSHEDQFL RLDFHAHGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17993T0/1-549 RIKNDYCSFL EFTNHSYDKN LETNDVEGEL QNLPGFK--- ---------- BACU001012/1-420 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000260408/1-748 HIYTGHIYGE EGSFSHGSVI DGRFEGFIQT RGGTFYVEPA ERYIKDRTLP ENSBTAP00000042110/1-748 HIYTGHIYGE EGSFSHGSVI DGRFEGFIQT HGGTFYVEPA ERYIKDRTLP ENSTTRP00000004912/1-729 XXXXXXXYGE EGSFSHGSVV DGRFEGFIQT RGGTFYVEPA ERYIKDRTLP bmy_17993T0/1-549 ---------- ---------- ---------- ---------- ---------- BACU001012/1-420 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000260408/1-748 FHSVIYHEDD INYPHKYGPQ GGCADHSVFE RMRKYQMTGV EEVTQIPQEE ENSBTAP00000042110/1-748 FHSVIYHEDD IKYPHKYGPQ GGCADHSVFE RMRKYQMTGV EEVTQTPQEK ENSTTRP00000004912/1-729 FHSVIYHEDD INYPHKYGPQ GGCADHSVFE RMRKYQMTGV EEVTQTPQEE bmy_17993T0/1-549 ---------- -NYPHKYGPQ GGCADHSVFE RMRKYQMTGV EEVTQTPQEE BACU001012/1-420 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000260408/1-748 HAANGPELLR KKRTTSAEKN TCQLYIQTDH LFFKYYGTRE AVIAQISSHV ENSBTAP00000042110/1-748 HAINGPELLR KKRTTVAEKN TCQLYIQTDH LFFKYYGTRE AVIAQISSHV ENSTTRP00000004912/1-729 HAINGPELLR KKRTTSAEKN TCQLYIQXXX XXXXXXXXXX XXXXXISSHV bmy_17993T0/1-549 RAINGPELLR KKRTTSAEKN TCQLYIQTDH LFFKYYGTRE AVIAQISSHV BACU001012/1-420 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000260408/1-748 KAIDTIYQTT DFSGIRNISF MVKRIRINTT ADEKDPTNPF RFPNIGVEKF ENSBTAP00000042110/1-748 KAIDTIYQTT DFSGIRNISF MVKRIRINTT ADEKDPTNPF RFPNIGVEKF ENSTTRP00000004912/1-729 KAIDTIYQTT DFSGIRNISF MVKRIRINTT ADEKDPTNPF RFPNIGVEKF bmy_17993T0/1-549 KAIDTIYQTT DFSGIRNISF MVKRIRINTT ADEKDPTNPF RFPNIGVEKF BACU001012/1-420 ---------- ---------- MVKRIRINTT ADEKDPTNPF RFPNIGVEKF 301 350 ENSP00000260408/1-748 LELNSEQNHD DYCLAYVFTD RDFDDGVLGL AWVGAPSGSS GGICEKSKLY ENSBTAP00000042110/1-748 LELNSEQNHD DYCLAYVFTD RDFDDGVLGL AWVGAPSGSS GGICEKSKLY ENSTTRP00000004912/1-729 LELNSEQNHD DYCLAYVFTD RDFDDGVLGL AWVGAPSGSS GGICEKSKLY bmy_17993T0/1-549 LELNSEQNHD DYCLAYVFTD RDFDDGVLGL AWVGAPSGSS GGICEKSKLY BACU001012/1-420 LELNSEQNHD DYCLAYVFTD RDFDDGVLGL AWVGAPSGSS GGICEKSKLY 351 400 ENSP00000260408/1-748 SDGKKKSLNT GIITVQNYGS HVPPKVSHIT FAHEVGHNFG SPHDSGTECT ENSBTAP00000042110/1-748 SDGKKKSLNT GIITVQNYGS HVPPKVSHIT FAHEVGHNFG SPHDSGTECT ENSTTRP00000004912/1-729 SDGKKKSLNT GIITVQNYGS HVPPKVSHIT FAHEVGHNFG SPHDSGTECT bmy_17993T0/1-549 SDGKKKSLNT GIITVQNYGS HVPPKVSHIT FAHEVGHNFG SPHDSGTECT BACU001012/1-420 SDGKKKSLNT GIITVQNYGS HVPPKVSHIT FAHEVGHNFG SPHDSGTECT 401 450 ENSP00000260408/1-748 PGESKNLGQK ENGNYIMYAR ATSGDKLNNN KFSLCSIRNI SQVLEKKRNN ENSBTAP00000042110/1-748 PGESKNLGQK ENGNYIMYAR ATSGDKLNNN KFSLCSIRNI SQVLEKKRNN ENSTTRP00000004912/1-729 PGESKNLGQK ENGNYIMYAR ATSGDKLNNN KFSLCSIRNI SQVLEKKRNN bmy_17993T0/1-549 PGESKNLGQK ENGNYIMYAR ATSGDKLNNN KFSLC----- ---------- BACU001012/1-420 PGESKNLGQK ENGNYIMYAR ATSGDKLNNN KFSLCSIRNI SQVLEKKRNN 451 500 ENSP00000260408/1-748 CFVESGQPIC GNGMVEQGEE CDCGYSDQCK DECCFDANQP EGRKCKLKPG ENSBTAP00000042110/1-748 CFVESGQPIC GNGMVEQGEE CDCGYSDQCK DECCYDANQP EGKKCKLKPG ENSTTRP00000004912/1-729 CFVESGQPIC GNGMVEQGEE CDCGYSDQCK DECCYDANQP EGKKCKLKPG bmy_17993T0/1-549 ---KSGQPIC GNGMVEQGEE CDCGYSDQCK DECCYDANQP EGKKCKLKPG BACU001012/1-420 CFVESGQPIC GNGMVEQGEE CDCGYSDQCK DECCYDANQL EGKKCKLRPG 501 550 ENSP00000260408/1-748 KQCSPSQGPC CTAQCAFKSK SEKCRDDSDC AREGICNGFT ALCPASDPKP ENSBTAP00000042110/1-748 KQCSPSQGPC CTAHCAFKSK TEKCRDDSDC AKEGICNGIT ALCPASDPKP ENSTTRP00000004912/1-729 KQCSPSQGPC CTAQCAFKSK TEKCRDDSDC AKEGICNGIT ALCPASDPKP bmy_17993T0/1-549 KQCSPSQGPC CTAQCAFKSK TEKCRDDSDC AKEGICNGIT ALCPASDPKP BACU001012/1-420 KQCSPSQGPC CTAQCAFKSK TEKCRDDSDC AKEGICNGVT ALCPASDPKP 551 600 ENSP00000260408/1-748 NFTDCNRHTQ VCINGQCAGS ICEKYGLEEC TCASSDGKDD KELCHVCCMK ENSBTAP00000042110/1-748 NFTDCNRHTQ VCINGQCAGS ICEKHGLEEC TCASSDGKDD KELCHVCCMK ENSTTRP00000004912/1-729 NFTDCNRHTQ VCINGQCAGS ICEKYGLEEC TCASSDGKDD KELCHVCCMK bmy_17993T0/1-549 NFTDCNRHTQ VCINGQCAGS ICEKYGLEEC TCGSSDGKDD KELCHVCCMK BACU001012/1-420 NFTDCNRHTQ VCINGQCAGS ICEKYGLEEC TCASSDGKDD KELCHVCCMK 601 650 ENSP00000260408/1-748 KMDPSTCAST GSVQWSRHFS GRTITLQPGS PCNDFRGYCD VFMRCRLVDA ENSBTAP00000042110/1-748 KMEPSTCAST GSVQWNKYFL GRTITLQPGS PCNDFRGYCD VFMRCRLVDA ENSTTRP00000004912/1-729 KMEPSTCAST GSVQWSKYFL GRTITLQPGS PCNDFRGYCD VFMRCRLVDA bmy_17993T0/1-549 KMEPSTCAST GSVQWNKYFL GRTITLQPGS PCNDFRGYCD VFMRCRLVDA BACU001012/1-420 KMEPSTCAST GSVQWNKYFL GRTITLQPGS PCNDFRGYCD VFMRCRLVDA 651 700 ENSP00000260408/1-748 DGPLARLKKA IFSPELYENI AEWIVAHWWA VLLMGIALIM LMAGFIKICS ENSBTAP00000042110/1-748 DGPLARLKKA IFSPELYENI AEWIVAYWWA VLLMGIALIM LMAGFIKICS ENSTTRP00000004912/1-729 DGPLARLKKA IFSPELYENI AEWIVAYWWA VLLMGIALIM LMAGFIKICS bmy_17993T0/1-549 DGPLARLKKA IFSPELYENI AEWIVI---- ---------- ---------- BACU001012/1-420 DGPLARLKKA IFSPELYENI AEWIVCSF-- -----CVFIL SVKGKVD--- 701 750 ENSP00000260408/1-748 VHTPSSNPKL PPPKPLPGTL KRRRPPQPIQ QPQRQRPRES YQMGHMRR ENSBTAP00000042110/1-748 VHTPSSNPKL PPPKPLPGTL KRRRPPQPIQ QPQRQRPRES YQMGHMRR ENSTTRP00000004912/1-729 VHTPSSNPKL PPPKPLPGTL KRRRPPQPIQ QPQRQRPRES YQMGHMRR bmy_17993T0/1-549 ---------- ---------- ---------- ---------- -------- BACU001012/1-420 ---------- ---------- ---------- ---------- --------