KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:52 2014 Check: 00 .. Name: ENSTTRP00000010234/1-785 Len: 1136 Check: 435 Weight: 1.00 Name: ENSP00000355026/1-841 Len: 1136 Check: 4421 Weight: 1.00 Name: BACU001217/1-995 Len: 1136 Check: 3487 Weight: 1.00 Name: bmy_01705T0/1-893 Len: 1136 Check: 5023 Weight: 1.00 Name: ENSBTAP00000042124/1-856 Len: 1136 Check: 3371 Weight: 1.00 // 1 50 ENSTTRP00000010234/1-785 MSAQSLPAAT PPTQKPPRII RPRPPSRPRA AQSPGAHHNG SSPQEPPLTA ENSP00000355026/1-841 MSAQSLPAAT PPTQKPPRII RPRPPSRSRA AQSPGPPHNG SSPQELPRNS BACU001217/1-995 MGGALGDPAS GIHREAFGIN SPHPGTSAWA AD--SEYWEG SPGSRGFITG bmy_01705T0/1-893 MSAQSLPAAT PPTQKPPRII RPRPPSRPRA VQ------NG SSPQEPPLTA ENSBTAP00000042124/1-856 MSAQSLPEAT PPTQKPPRII RPRPPSRARA TQSPGPHHNG SSPQESPLTA 51 100 ENSTTRP00000010234/1-785 NEA---PTLM CTPIFWEPPA SSLKPPALL- -------PPS ASKASLDSQT ENSP00000355026/1-841 NDA---PTPM CTPIFWEPPA ASLKPPALL- -------PPS ASRASLDSQT BACU001217/1-995 GEERLDPGLL DAEAEYGGSS PSSACSGLLL LRAEGSPPSP SSKASLDSQT bmy_01705T0/1-893 NEV---PSLM CTPIFWEPPA PSLKPPALL- -------PPS ASKASLDSQT ENSBTAP00000042124/1-856 NEA---PSPM CTPMFWEPPA PSLKPPALL- -------PPS ASKASLDSQT 101 150 ENSTTRP00000010234/1-785 SPDS-PSGT- -PSPVSRRSI SPEPAPRSPV PPPKPSGSPR TALPLLHSTR ENSP00000355026/1-841 SPDS-PSSTP TPSPVSRRSA SPEPAPRSPV PPPKPSGSPC T--PLLPMAG BACU001217/1-995 SPDS-PSGT- -PSPVSRRSI SPEPALRSPV PPPKPSGSPR TALPPLHSTR bmy_01705T0/1-893 SPDS-PSGT- -PSPVSRRSI SPEPALRSPV PPPKPSGSPR TALPPLHSTQ ENSBTAP00000042124/1-856 FPDSFPDSSD TPSPVSRRSI SPETTPRSPV PPPKPSGSPR MALPLLPTTQ 151 200 ENSTTRP00000010234/1-785 APGQDGSASA AGTVRRLAGR FEWGVEGKVQ APDALEPGSP GGPDVNGERE ENSP00000355026/1-841 VLAQNGSASA PGTVRRLAGR FEGGAEGRAQ DADAPEPGLQ ARADVNGERE BACU001217/1-995 APGQDGSASA TGTVRRLAGR FEWGAEGRVQ APDALEPGPP GGLDVNGERE bmy_01705T0/1-893 APGQDGSASA TGTVRRLAGR FEWGAEGRVQ APDALEPGPP GGLDVNGERE ENSBTAP00000042124/1-856 VPDQDGSASA PGTVRRLAGK FEWGTEGRVQ AADTLEPSPP GGVDVNGERE 201 250 ENSTTRP00000010234/1-785 TAQGILAGSG SQENGTPDAA LACPACCPCV CHVARPGLEL RWVPLGGYED ENSP00000355026/1-841 AP---LTGSG SQENGAPDAG LACPPCCPCV CHTTRPGLEL RWVPVGGYEE BACU001217/1-995 TAQGILAGSG SQENGTPDAA LACPPCCPCV CHVARPGLEL RWVPLGGYED bmy_01705T0/1-893 TAQGILAGSG SQENGTPDAV LACPPCCPCV CHVARPGLEL RWVPLGGYED ENSBTAP00000042124/1-856 TPQGNLTGSG SQENGTPGAG LACPPCCPCV CHVGRPGLEL RWVPVGGYED 251 300 ENSTTRP00000010234/1-785 GPRVPCRASP LRTSRSRPSP PSLGQPPVVL TSYRSTAERK LLPPLKPPKP ENSP00000355026/1-841 VPRVPRRASP LRTSRSRPHP PSIGHPAVVL TSYRSTAERK LLPLLKPPKP BACU001217/1-995 GPRALCRASP LRTSRSRPSP PS--QPPVVL TSYRSTAERK LLPPLKPPKP bmy_01705T0/1-893 GPRALCRASP LRTSRSRPSP PSLSQPPVVL TSYRSTAERK LLPPLKPPKP ENSBTAP00000042124/1-856 GPRVPCRASP LRASRSRPSP SSLSHPPVVL TSYRSTAERK LLPPLKPPKP 301 350 ENSTTRP00000010234/1-785 TRVRQDVTSS GDAPQPDLDL PSEDGIQ--- ------TGDS PDGVPQNDPP ENSP00000355026/1-841 TRVRQDATIF GDPPQPDLDL LSEDGIQ--- ------TGDS PDEAPQNTPP BACU001217/1-995 TRVRQDVTSS GDAPQPDLDL PSEDGIQ--- ------TGDS PDGAPQNNPP bmy_01705T0/1-893 TRVRQDVTSS GDAPQPDLDL PSEDGIQ--- ------TGDS PDGAPQNNPP ENSBTAP00000042124/1-856 TRIRQDITIS GEPPQPDLDP PSEDGIQRGT GPEGWASGDS PDGAPQNDSP 351 400 ENSTTRP00000010234/1-785 ATTEGREAEE LEELKGQNWE LPLQD----- ---------- ---------- ENSP00000355026/1-841 ATVEGREEEG LEVLKEQNWE LPLQD----- ---------- ---------- BACU001217/1-995 ATMEGREDEE LEELKEQNWE LPLQD----- ---------- ---------- bmy_01705T0/1-893 ATMEGREDEE LEELKEQHWE LPLQDGEGLR PRGVPAETIQ QWARVPGHWT ENSBTAP00000042124/1-856 ATTEGREEEE LEELKEQNWE LPLQD----- ---------- ---------- 401 450 ENSTTRP00000010234/1-785 ---------- ---------- --------AH AGGGCLGRAR ---------- ENSP00000355026/1-841 ---------E PLYQTYRAAV LSEELWGVGE DGSPSPANAG DAPTFPRPPG BACU001217/1-995 ---------E PLYQTYRAAV LSEELWGVSE DGGPSSANPG EAPPFARPPG bmy_01705T0/1-893 SLMCDICSPE PLYQTYRAAV LSEELWGVSE DGGPSSANPG EAPPFARPPG ENSBTAP00000042124/1-856 ---------E PLYQTYRAAV LSEELWGVGE DGGPASANAG EAPTFARPPG 451 500 ENSTTRP00000010234/1-785 ---------- ---------- ---------- ---------- ---------- ENSP00000355026/1-841 PRNTLWQELP AVQASGLLDT LSPQERRMQE ---------- ---------- BACU001217/1-995 PRNTLWQELP AVRASGLLDT LSPQERRMQE ---------- ---------- bmy_01705T0/1-893 PRNTLWQELP AVRASGLLDT LSPQERRMQE VDAPGVRGGG XXXXXXXXXX ENSBTAP00000042124/1-856 PRNTLWQELP AVRASGLLDT LSAQERRMQE ---------- ---------- 501 550 ENSTTRP00000010234/1-785 ---------- ---------- ---------- ------SLFE VVTSEASYLR ENSP00000355026/1-841 ---------- ---------- ---------- ------SLFE VVTSEASYLR BACU001217/1-995 ---------- ---------- ---------- ------SLFE VVTSEASYLR bmy_01705T0/1-893 XXXXXXXXXX XXXXXXXXXG LPGSWAFHSR SALPPQSLFE VVTSEASYLR ENSBTAP00000042124/1-856 ---------- ---------- ---------- ------SLFE VVTSEASYLR 551 600 ENSTTRP00000010234/1-785 SLRLLTDTFV LSQALRDTLT PRDHHTLFSN VQRVQGVSER FLGKLLSRVR ENSP00000355026/1-841 SLRLLTDTFV LSQALRDTLT PRDHHTLFSN VQRVQGVSER FLATLLSRVR BACU001217/1-995 SLRLLTDTFV LSQALRDTLT PRDHHTLFSN VQRVQGVSER FLGKLLSRVR bmy_01705T0/1-893 SLRLLTDTFV LSQALRDTLT PRDHHTLFSN VQRVQGVSER FLGKLLSRVR ENSBTAP00000042124/1-856 SLRLLTDTFV LSQALRDTLT PRDHHTLFSN VQRVQGVSER FLGKLLSRVR 601 650 ENSTTRP00000010234/1-785 SSPHISDLCD VVHAHAVGPF SVYVDYVRNQ QYQEETYSRL MDTNVRFSAE ENSP00000355026/1-841 SSPHISDLCD VVHAHAVGPF SVYVDYVRNQ QYQEETYSRL MDTNVRFSAE BACU001217/1-995 SSPHISDLCD VVHAHAVGPF SVYVDYVRNQ QYQEETYSRL MDTNVRFSAE bmy_01705T0/1-893 SSPRISDLCD VVHAHAVGPF SVYVDYVRNQ QYQEETYSRL MDTNVRFSAE ENSBTAP00000042124/1-856 ASPHIRDLCD VVHAHAVGPF SVYVDYVRNQ QYQEETYSRL MDTNVRFSAE 651 700 ENSTTRP00000010234/1-785 LRRLQSLPKC QRLPLPSFLL LPFQRITRLR MLLQXXXXXX XXXXXXXXXX ENSP00000355026/1-841 LRRLQSLPKC ERLPLPSFLL LPFQRITRLR MLLQNILRQT EEGSSRQENA BACU001217/1-995 LRRLQSLPKC QRLPLPSFLL LPFQRITRLR MLLQNILRQT EEGSSRQENA bmy_01705T0/1-893 LRRLQSLPKC QRLPLPSFLL LPFQRITRLR MLLQNILRQT EEGSSRQENA ENSBTAP00000042124/1-856 LRRLQSLPKC QRLPLPSFLL LPFQRITRLR MLLQNILRQT EEGSSRQENA 701 750 ENSTTRP00000010234/1-785 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355026/1-841 QKALGAVSKI IERCSAEVGR MKQTEELIRL TQRLRFHKVK ALPLVSWSRR BACU001217/1-995 QKALGAVSKI IERCSAEVGR MKQTEELIRL TQRLRFHKVK ALPLVSWSRR bmy_01705T0/1-893 QKALGAVSKI IERCSAEVGR MKQTEELIRL TQRLRFHKVK ALPLVSWSRR ENSBTAP00000042124/1-856 QKALGAVSKI IERCSAEVGR MKQTEELIRL TQRLRFHKVK ALPLVSWSRR 751 800 ENSTTRP00000010234/1-785 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355026/1-841 LEFQGELTEL GCRRGGVLFA SRPRFTPLCL LLFSDLLLIT QPKSGQRLQV BACU001217/1-995 LELQGELTEL GCRRGGVLFA SRPRFTPLCL LLFSDLLLIT QPKSGQRLQV bmy_01705T0/1-893 LELQGELTEL GCRRGGVLFA SRPRFTPLCL LLFSDLLLIT QPKSGQRLQV ENSBTAP00000042124/1-856 LELQGELTEL GCRRGGVLFA SRPRFTPLCL LLFSDLLLIT QPKSGQRLQV 801 850 ENSTTRP00000010234/1-785 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355026/1-841 LDYAHRSLVQ AQQVPDPSGP PTFRLSLLSN HQGRPTHRLL QASSLSDMQR BACU001217/1-995 LDYAHRSLVQ AQQVPDPSGP PTFRLSLLSN HQGRPTHRLL QASSLSDMQR bmy_01705T0/1-893 LDYAHRSLVQ AQQVPDPSGP PTFRLSLLSN HQGRPTHRLL QASSLSDMQR ENSBTAP00000042124/1-856 LDYAHRSLVQ AQQVPDPSGP PTFRLSLLSN HQGRPTHRLL QASSLSDMQR 851 900 ENSTTRP00000010234/1-785 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355026/1-841 WLGAFPTPGP LPCSPDTIYE DCDCSQELCS ESSAPAKTEG RSLESRAAPK BACU001217/1-995 WLGAFPTPGP LPCSPGTIYE DC-------- ---------- ---------- bmy_01705T0/1-893 WLGAFPTPGP LPCSPGTIYE DC-------- ---------- ---------- ENSBTAP00000042124/1-856 WLGAFPTPGP LPCSADTVYE DCDCSQELCS EPSTPTKTEG RNVESRAPPK 901 950 ENSTTRP00000010234/1-785 XXXXXXXXWL KGLPGAFPAQ LV-------- ---------- ---------- ENSP00000355026/1-841 HLHKTPEGWL KGLPGAFPAQ LV-------- ---------- ---------- BACU001217/1-995 -------GWL KGLPGAFPAQ LVLASELSLI AFILLLVMVF SKKWLYLSRV bmy_01705T0/1-893 -------GWL KGLPGAFPAQ LV-------- ---------- ---------- ENSBTAP00000042124/1-856 HLHKNPEGWL KGLPGAFPAQ LV-------- ---------- ---------- 951 1000 ENSTTRP00000010234/1-785 ---------- ---------- ---------- ---------- ---------- ENSP00000355026/1-841 ---------- ---------- ---------- ---------- ---------- BACU001217/1-995 RFYQHWPVNV STKIDTSVHM MSLGLLQICK SKSCSNSENG KAFGVAKITF bmy_01705T0/1-893 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042124/1-856 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000010234/1-785 CEVTGE---- ---------- ---------- ---------- ---------- ENSP00000355026/1-841 CEVTGE---- ---------- ---------- ---------- ---------- BACU001217/1-995 CLALGLGFIF TIWLHLPYIP GLQRLPFFGW LGTVMSFFEV FFTLFTLILF bmy_01705T0/1-893 CEVTGE---- ---------- ---------- ---------- ---------- ENSBTAP00000042124/1-856 CEVTGE---- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000010234/1-785 ------HERR KHLR------ ---------- ---------- QHQR-----L ENSP00000355026/1-841 ------HERR RHLR------ ---------- ---------- QNQR-----L BACU001217/1-995 PINVWIFELK KNLSIPIGWS YFIGWLVFIL YVTCASLCYF NHTRSWCLIL bmy_01705T0/1-893 ------HERR KHLR------ ---------- ---------- QHQR-----L ENSBTAP00000042124/1-856 ------HERR KHLR------ ---------- ---------- QHQR-----L 1101 1150 ENSTTRP00000010234/1-785 LEAVGSSSGS PSAPQP---- ---------- ------ ENSP00000355026/1-841 LEAVGSSSGT PNAPPP---- ---------- ------ BACU001217/1-995 SHPSGTVSSS SSVHKSVSEQ VASNTAVDQE EVLDPE bmy_01705T0/1-893 LEAVGPSSGS PSAPQP---- ---------- ------ ENSBTAP00000042124/1-856 LEAVGPSSGP PDAPPP---- ---------- ------