KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:07 2014 Check: 00 .. Name: ENSP00000313490/1-1338 Len: 1525 Check: 5543 Weight: 1.00 Name: ENSBTAP00000042131/1-1338 Len: 1525 Check: 9616 Weight: 1.00 Name: BACU001220/1-1346 Len: 1525 Check: 6153 Weight: 1.00 Name: bmy_01709T0/1-1465 Len: 1525 Check: 8229 Weight: 1.00 Name: ENSTTRP00000010209/1-1290 Len: 1525 Check: 7686 Weight: 1.00 // 1 50 ENSP00000313490/1-1338 ---------- ---------- ------MSPV LHFYVRPSGH EGAAPGHTRR ENSBTAP00000042131/1-1338 ---------- ---------- ------MSSV LHFYVRPSGH ERAASEYIQR BACU001220/1-1346 MTYMGAPGFP ELGDCENGCH QRTPTEMSSV LHFYVRPSGH ERAASEYTQR bmy_01709T0/1-1465 ---------- ---------- ------MSSV LHFYVRPSGH ERAASEYTQR ENSTTRP00000010209/1-1290 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000313490/1-1338 KLQGKLPELQ GVETELCYNV NWTAEALPSA EETKKLMWLF GCPLLLDDVA ENSBTAP00000042131/1-1338 KLQRELPELQ GVKTEQCYNV NWAAESFPSN KEMKKLTWLF GCPLLLDDVA BACU001220/1-1346 KLRGELPELQ GVKTELCYNV NWTAESSPSA EEMKKLTWLF GCPLLLDDVA bmy_01709T0/1-1465 KLRGELPELQ GVKTELCYNV NWTAESFPSA EEMKKLTWLF GCPLLLDDVA ENSTTRP00000010209/1-1290 ---------- ---------- ----ESSPSA EEMKKLTWLF GCPLLLDDVA 101 150 ENSP00000313490/1-1338 RESWLLPGSN DLLLEVGPR- ---------- ----LNFSTP TSTNIVSVCR ENSBTAP00000042131/1-1338 QESWLRPGPT DLLLEVGPR- ---------- ----LNFSTP TSSNIVSVCQ BACU001220/1-1346 PESWLVPGST DLLLEVGPRQ VSQPRVARSM VQSPLNFSTP TSSNIVSVCQ bmy_01709T0/1-1465 QE-------- ---------- ---------- ----LNFSTP TSSNIVSVCQ ENSTTRP00000010209/1-1290 QESWLLPGPT DLLLEVGPR- ---------- ----LNFSTP TSSNIVSVCQ 151 200 ENSP00000313490/1-1338 ATGLGPVDRV ETTRRYRLSF AHPPSAEVEA IALATLHDRM TEQHFPHPIQ ENSBTAP00000042131/1-1338 AAGLGAVDRV EPTRRYLLSF AHPPSADLEA IALATLHDRM TEQHFPQPIQ BACU001220/1-1346 AAGLGAVDRV EPTRRYLLSF AHPPSAELEA VALATLSDRM TEQHFPCPIQ bmy_01709T0/1-1465 AAGLGAVDRV EPTRRYLLSF AXPPSAELEA IALATLHDRM TEQHFPCPIQ ENSTTRP00000010209/1-1290 AAGLGAVDRV EPTRRYLLSF AHPPSAELEA VALATLHDRM TEQHFPCPIQ 201 250 ENSP00000313490/1-1338 SFSPESMPEP LNGPINILGE GRLALEKANQ ELGLALDSWD LDFYTKRFQE ENSBTAP00000042131/1-1338 SFSSGCIPAP LSGPIDVLAE GRSALEKANQ ELGLALDSWD LDFYTKRFQE BACU001220/1-1346 SFSLGCIPAP LGGPIDILAE GRSALEKANQ ELGLALDSWD LDFYTKRFQE bmy_01709T0/1-1465 SFSLGCIPAP LGGPIDILAE GRSALEEANQ ELGLALDSWD LDFYTKRFQE ENSTTRP00000010209/1-1290 SFSLGCTPAP LGGPIDILAE GRSALEKANQ ELGLALDSWD LDFYTKRFQE 251 300 ENSP00000313490/1-1338 LQRNPSTVEA FDLAQSNSEH SRHWFFKGQL HVDGQKLVHS LFESIMSTQE ENSBTAP00000042131/1-1338 LQRNPSTVEV FDLAQSNSEH SRHWFFKGRL HVDGQELPHS LFESIMSTQA BACU001220/1-1346 LQRNPSTVEA FDLAQSNSEH SRHWFFKGRL HVDGQELAHS LFESIMSTQA bmy_01709T0/1-1465 LQRNPSTVEA FDLAQSNSEH SRHWFFKGRL HVDGQELAHS LFESIMSTQA ENSTTRP00000010209/1-1290 LQRNPSTVEA FDLAQSNSEH SRHWFFKGRL HVDGQELAHS LFESIMSTQA 301 350 ENSP00000313490/1-1338 SSNPNNVLKF CDNSSAIQGK EVRFLRPEDP TRPSRFQQQQ GLRHVVFTAE ENSBTAP00000042131/1-1338 SSNPNNVLKF CDNSSAIQGK EVRFLRPKDP TRPSSFQQCQ GLRHVVFTAE BACU001220/1-1346 SSHPNNVLKF CDNSSAIQGK EVRFLRPEDP SRPSCFRQRQ GLRHVVFTAE bmy_01709T0/1-1465 SSHPNNVLKF CDNSSAIQGK EVRFLRPEDP SRPSCFRQRQ GLRHVVFTAE ENSTTRP00000010209/1-1290 SSHPNNVLKF CDNSSAIQGK EVQFLRPEDP SRPSCFRQRQ GLRHVVFTAE 351 400 ENSP00000313490/1-1338 THNFPTGVCP FSGATTGTGG RIRDVQCTGR GAHVVAGTAG YCFGNLHIPG ENSBTAP00000042131/1-1338 THNFPTGVAP FSGAATGTGG RIRDVQCTGR GAHVVAGTAG YCFGNLHIPG BACU001220/1-1346 THNFPTGVAP FSGATTGTGG RIRDVQCTGR GAHVVAGTAG YCFGNLHIPG bmy_01709T0/1-1465 THNFPTGVAP FSGATTGTGG RIRDVQCTGR GAHVVAGTAG YCFGNLHIPG ENSTTRP00000010209/1-1290 THNFPTGVAP FSGATTGTGG RIRDVQCTGR GAHVVAGTAG YCFGNLHIPG 401 450 ENSP00000313490/1-1338 YNLPWEDPSF QYPGNFARPL EVAIEASNGA SDYGNKFGEP VLAGFARSLG ENSBTAP00000042131/1-1338 YSMPWEDPSF QYPGNFARPL EIAIEASNGA SDYGNKFGEP VLAGFARSLG BACU001220/1-1346 YSMPWEDPSF QYPGNFARPL EIAIEASNGA SDYGNKFGEP VLAGFARSLG bmy_01709T0/1-1465 YSMPWEDPSF QYPGNFARPL EIAIEASNGA SDYGNKFGEP VLAGFARSLG ENSTTRP00000010209/1-1290 YSMPWEDPSF QYPGNFARPL EIAIEASNGA SDYGNKFGEP VLAGFARSLG 451 500 ENSP00000313490/1-1338 LQLPDGQRRE WIKPIMFSGG IGSMEADHIS KEAPEPGMEV VKVGGPVYRI ENSBTAP00000042131/1-1338 LQLPDGQRRE WIKPIMFSGG IGSMEAEHVS KEPPETGMDV VKIGGPVYRI BACU001220/1-1346 LQLPDGQRRE WIKPIMFSGG IGSMEAEHVS KEPPEPGMDV VK-------- bmy_01709T0/1-1465 LQLPDGQRRE WIKPIMFSGG IGSMEAEHVN KEPPEPGMDV VKVGGPVYRI ENSTTRP00000010209/1-1290 LQLPDGQRRE WIKPIMFSGG IGCMEAEHVS KEPPEPGMDV VKVGGPVYRI 501 550 ENSP00000313490/1-1338 GVGGGAASSV QVQGDNTSDL DFGAVQRGDP EMEQKMNRVI RACVEAPKGN ENSBTAP00000042131/1-1338 GVGGGAASSV QVQGDNASDL DFGAVQRGDP EMEQKMNRVI RACVEAPGGN BACU001220/1-1346 ---------- -VQGDNASDL DFGAVQRGDP EMEQKMNRVI RACVEAPGGN bmy_01709T0/1-1465 GVGGGAASS- -VQGDNASDL DFGAVQRGDP EMEQKMNRVI RACVEAPGGN ENSTTRP00000010209/1-1290 GVGGGAASSV QVQGDNASDL DFGAVQRGDP EMEQKMNRVI RACVEAPRGN 551 600 ENSP00000313490/1-1338 PICSLHDQGA GGNGNVLKEL SDPAGAIIYT SRFQLGDPTL NALEIWGAEY ENSBTAP00000042131/1-1338 PICSLHDQGA GGNGNVLKEL SDPAGAVIHT SCFQLGDPTL NALEIWGAEY BACU001220/1-1346 PICSLHDQGA GGNGNVLKEL SDPAGAVIYT SRFQLGDPTL NALEIWGAEY bmy_01709T0/1-1465 PICSLHDQGA GGNGNVLKEL SDPAGAVIYT SRFQLGDPTL NALEIWGAEY ENSTTRP00000010209/1-1290 PICSLHDQGA GGNGNVLKEL SDPAGAVIYT SRFQLGDPTL NALEIWGAEY 601 650 ENSP00000313490/1-1338 QESNALLLRS PNRDFLTHVS ARERCPACFV GTITGDRRIV LVDDRECPVR ENSBTAP00000042131/1-1338 QESNALLLRP SDRDFLSCVS ARERCPVCFV GTITGDRRIV LVDDREWPMG BACU001220/1-1346 QESNALLLRP PDRDFLSRVS ARERCPACFV GTITGDRRIV LVDDRECPMG bmy_01709T0/1-1465 QESNALLLRP PDRDFLSRVS ARERCPACFV GTITGDRRIL LVDDRECPMG ENSTTRP00000010209/1-1290 QESNALLLRP PDRDFLSRVS ARERCPVCFV GTITGDGRIV LVDDRECPMG 651 700 ENSP00000313490/1-1338 RNGQGDAPPT PLPTPVDLEL EWVLGKMPRK EFFLQRKPPM LQPLALPPGL ENSBTAP00000042131/1-1338 TGGQVDAPPT PPPTPVDLDL DWVLGKMPQK EFFLQRSLPL LQPLTLPPGL BACU001220/1-1346 RDGQGGAPPT PPPTPVDLDL DWVLGKMPRK EFFLQRSLPV LRPLALPPGL bmy_01709T0/1-1465 RDGQGDAPPT PPPTPVDLGL DWVLGKMPQK EFFLQRSLPV LRPLALPPGL ENSTTRP00000010209/1-1290 RDGQGDAPPT PLPTPVDLDL DWVLGKMPRK EFFLQRSLPV LRPLALPPGL 701 750 ENSP00000313490/1-1338 SVHQALERVL RLPAVASKRY LTNKVDRSVG GLVAQQQCVG PLQTPLADVA ENSBTAP00000042131/1-1338 SVRQALARVL RLPAVASKRY LTNKVDRSVG GLVAQQQCVG PLQTPLADVA BACU001220/1-1346 SVRQALARVL RLPAVASKRY LTSKVDRSVG FLVAQQQCVG PLQTPLADVA bmy_01709T0/1-1465 SVRQALARVL RLPAVASKRY LTSKVDRSVG GLVAQQQCVG PLQTPLADVA ENSTTRP00000010209/1-1290 SVRQALAWVL RLPAVASKRY LTSKVDRSVG GLVAQQQCVG PLQTPLADVA 751 800 ENSP00000313490/1-1338 VVALSHEELI GAATALGEQP VKSLLDPKVA ARLAVAEALT NLVFALVTDL ENSBTAP00000042131/1-1338 VVALSHQELV GAATALGEQP VKSLLDPKVA ARLAVAEALT NLVFALVTDL BACU001220/1-1346 VVALSHQELV GAATALGEQP VKSLLDPKVA ARLAVAEALT NLVFALVTDL bmy_01709T0/1-1465 VVALSHQELV GAATALGEQP VKSLLDPKVA ARLAVAEALT NLVFALVTDL ENSTTRP00000010209/1-1290 VVALSHQELV GAATALGEQP VKSLLDPKVA ARLAVAEALT NLVFALVTDL 801 850 ENSP00000313490/1-1338 R--------- ---------- ---------- ---------- ------DVKC ENSBTAP00000042131/1-1338 Q--------- ---------- ---------- ---------- ------DVKC BACU001220/1-1346 R--------- ---------- ---------- ---------- ------DVKC bmy_01709T0/1-1465 RVSPLQLLPW SPRPLGRRRN HRLLTPLPPA SPHRPPSLTR VSAASQDVKC ENSTTRP00000010209/1-1290 R--------- ---------- ---------- ---------- ------DVKC 851 900 ENSP00000313490/1-1338 SGNWMWAAKL PGEGAALADA CEAMVAVMAA LGVAVDGGKD SLSMAARVGT ENSBTAP00000042131/1-1338 SGNWMWAAKL PGEGAALADA CEAMVAVMAA LGVAVDGGKD SLSMAARVGS BACU001220/1-1346 SGNWMWAAKL QGEGAALADA CGAVAAVMAA LGVAVDGGKD SLSMAARVGA bmy_01709T0/1-1465 SGNWMWAAKL QGEGAALADA CGAVAAVMAA LGVAVDGGKD SLSMAARVGT ENSTTRP00000010209/1-1290 SGNWMWAAKL PGEGAALADA CGAVAAVMAA LGVAVDGGKD SLSMAARVGA 901 950 ENSP00000313490/1-1338 ETVRAP---- ---------- ---------- --GSLVISAY AVCPDITATV ENSBTAP00000042131/1-1338 ETVRAP---- ---------- ---------- --GSLVISAY AVCSDITATV BACU001220/1-1346 ETVRAP---- ---------- ---------- --GSLVISAY AVCPDITATV bmy_01709T0/1-1465 ETVRAPGELW APKGDGQVCG PGCASLSTPC SAGSLVISAY AVCPDITATV ENSTTRP00000010209/1-1290 ETVRAP---- ---------- ---------- --GSLVISAY AVCPDITATV 951 1000 ENSP00000313490/1-1338 TPDLKHPEGR G--------- ---------- ---------- ---------- ENSBTAP00000042131/1-1338 TPDLKRPGGR G--------- ---------- ---------- ---------- BACU001220/1-1346 TPDLKCPGGR G--------- ---------- ---------- ---------- bmy_01709T0/1-1465 TPDLKCPGGR GRGSSLSSVH CGFTAGSFVW GLLRECWAPS FSTGAVVPSG ENSTTRP00000010209/1-1290 TPDLKCPGGR G--------- ---------- ---------- ---------- 1001 1050 ENSP00000313490/1-1338 ---------- ---------- ---------- ------HLLY VALSPGQHRL ENSBTAP00000042131/1-1338 ---------- ---------- ---------- ------HLLY VPLSPGQHRL BACU001220/1-1346 ---------- ---------- ---------- ------HLLY VPLSPGQHRL bmy_01709T0/1-1465 AGGLGVSPHP GNFSEHGGRG SPEPPISPHP FPVSPGHLLY VPLSPGQHRL ENSTTRP00000010209/1-1290 ---------- ---------- ---------- ------HLLY VPLSPGRHRL 1051 1100 ENSP00000313490/1-1338 GGTALAQCFS QLGEHPPDLD LPENLVRAFS ITQGLLKDRL LCSGHDVSDG ENSBTAP00000042131/1-1338 GGTALAQCFS QLGEQPPDLD VPENLVRAFS ITQGLLKDRL LCSGHDVSDG BACU001220/1-1346 GGTALAQCFS QLGEQPPDLD LPENLVQAFG ITQGLLKDRL LCSGHDVSDG bmy_01709T0/1-1465 GGTALAQCFS QLGEQPPDLD LPENLVRAFS ITQGLLKDRL LCSGHDVSDG ENSTTRP00000010209/1-1290 GGTALAQCFS QLGEQPPDLD LPENLVRAFG ITQGLLKDRL LCSGHDVSDG 1101 1150 ENSP00000313490/1-1338 GLVTCLLEMA FAGNCGLQVD VPVPRVDVLS VLFAEEPGLV LEVQEPDLAQ ENSBTAP00000042131/1-1338 GLITCLLEMA FAGNCGIEVD IPAPGVDALP VLFAEEPGLV LEVQEPDLAQ BACU001220/1-1346 GLITCLLEMA FAGNCGIEVA VPASGVNALP VLFAEEPGLV LEVQEPDLGQ bmy_01709T0/1-1465 GLITCLLEMA FAGNCGIEVA VPASGVNALP VLFAEEPGLV LEVQEPDLAQ ENSTTRP00000010209/1-1290 GLITCLLEMA FAGNCGIEVA VPAPGVNALP VLFAEEPGLV LEVQEPDLAQ 1151 1200 ENSP00000313490/1-1338 VLKRYRDAGL HCLELGHTGE AGPHAMVRVS VNGAVVLEEP VGELRALWEE ENSBTAP00000042131/1-1338 VLMRYRNAGL HCLELGLTGD TGPHAMVRVS VNRTVVLEEP VGQLRALWEE BACU001220/1-1346 VLTRYREAGL HCLELGRTGN AGPHAMVRVS VNGAVVLEEP VGQLRALWEE bmy_01709T0/1-1465 VLTRYREAGL HCLELGRTGN AGPHAMVRVS VNGAVVLEEP VGQLRAIWEE ENSTTRP00000010209/1-1290 VLTRYREAGL HCLELGRTGS AGPHATVRVS VNGAVVLEEP VGQLRALWEE 1201 1250 ENSP00000313490/1-1338 TSFQLDRLQA EPRCVAEEER GLRERMGPSY CLPPTFPKAS VPREPGGPSP ENSBTAP00000042131/1-1338 TSFQLDRLQA KPHCVAQEEQ GLRERAGPTF CLPPTFPRAS VPCEPGGPAP BACU001220/1-1346 TSFQLDRLQA EPHCVAQEEE GLRERTGPTY CLPPTFPQAS VPHEPGGPAP bmy_01709T0/1-1465 TSFQLDRLQA EPHCVAQEEE GLRERTGPTY CLPPTFPKAS VPHEPGGPAP ENSTTRP00000010209/1-1290 TSFQLDRLQA EPHCVAQEEG GLRERTGPTY CLPPTFPTAS VPHEPGGPAP 1251 1300 ENSP00000313490/1-1338 RVAILREEGS NGDREMADAF HLAGFEVWDV TMQDLCSGAI GLDTFRGVAF ENSBTAP00000042131/1-1338 RVAIIREEGS NGDREMADAF HLAGFEVWDV TMQDLCSGAI GLDTFRGVAF BACU001220/1-1346 RVAIFREEGS NGDREMADAF HLAGFEVWDV TMQDLCSGAV RLDTFQGMAF bmy_01709T0/1-1465 RVAIFREEGS NGDREMADAF HLAGFEVWDV TMQDLCSGAV RLDTFQGMAF ENSTTRP00000010209/1-1290 RVAIFREEGS NGDREMADAF HLAGFEVWDV TMQDLCSGAV RLDTFQGMAF 1301 1350 ENSP00000313490/1-1338 VGGFSYADVL GSAKGWAAAV TFHPRAGAEL RRFRKRPDTF SLGVCNGCQL ENSBTAP00000042131/1-1338 VGGFSYADVL GSAKGWAAAV TFNPQAGAEM KRFRQRPDTF SLGVCNGCQL BACU001220/1-1346 VGGFSYADVL GSAKGWAAAV TFNPQAGAEL RRFRQRPDTF SLGVCNGCQL bmy_01709T0/1-1465 VGGFSYADVL GSAKGWAAAV TFNPQAGAEL RRFRQRPDTF SLGVCNGCQL ENSTTRP00000010209/1-1290 VGGFSYADVL GSAKGWAAAV TFNPQAGAEL RRFRQRPDTF SLGVCNGCQL 1351 1400 ENSP00000313490/1-1338 LALLGWVGGD PNEDAAEMGP DSQPARPGLL LRHNLSGRYE SRWASVRVGP ENSBTAP00000042131/1-1338 LALLGWVGGS SSEEVVEMCQ ESWPARPGLL LRHNLSGRFE SRWASVRVGP BACU001220/1-1346 LALLGWVGGS PGEEAAEMGH EPWPARPGLL LRHNRSGRFE SRWASVRVGP bmy_01709T0/1-1465 LALLGWVGGS PGEEAAEMGH EPWPARPGLL LRHNRSGRFE SRWASVRVGP ENSTTRP00000010209/1-1290 LALLGWVGGS PGDEAAEMGH ESWPARPGLL LRHNQSGRFE SRWASVRVGP 1401 1450 ENSP00000313490/1-1338 GPALMLRGME GAVLPVWSAH GEGYVAFSSP ELQAQIEARG LAPLHWADDD ENSBTAP00000042131/1-1338 GPALMLRGME GAVLPVWSAH GEGYMAFSSP ELQAQMEARG LAPLHWADDD BACU001220/1-1346 GPALMLRGME GAVLPVWSAH GEGYMAFSSP ELQAQIEARG LAPLHWADDD bmy_01709T0/1-1465 GPALMLRGME GAVLPVWSAH GEGYMAFSSP ELQAQIEARG LAPLHWADDD ENSTTRP00000010209/1-1290 GPALMLRGME GAVLPVWSAH GEGYMAFSSP ELQAQIEARG LAPLHWADDD 1451 1500 ENSP00000313490/1-1338 GNPTEQYPLN PNGSPGGVAG ICSCDGRHLA VMPHPERAVR PWQWAWRPPP ENSBTAP00000042131/1-1338 GNPTEQYPLN PNGSPGGVAG ICSPDGRHLA LMPHPERSVR PWQWAWRPPP BACU001220/1-1346 GNPTEQYPLN PNGSPAGMAG VCSPDGRHLA LMPHPERSVC KGHFLVTAVT bmy_01709T0/1-1465 GNPTEQYPLN PNGSPGGMAG VCSPDGRHLA LMPHPERCVR PWQWAWRPPP ENSTTRP00000010209/1-1290 GNPTEQYPLN PNGSPGGMAG ICSPDGRHLA LMPHPERSVR PWQWAWRPPP 1501 1550 ENSP00000313490/1-1338 FDTLTTSPWL QLFINARNWT LEGSC ENSBTAP00000042131/1-1338 FDTLTTSPWL QLFINARNWT QECSC BACU001220/1-1346 VLSYGSSQFA P--------- ----- bmy_01709T0/1-1465 FDTMTTSPWL QLFINARNWT REGGC ENSTTRP00000010209/1-1290 FDTMTTSPWL QLFINARNWT REGGC