KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:08 2014 Check: 00 .. Name: ENSP00000313759/1-1217 Len: 1263 Check: 93 Weight: 1.00 Name: ENSBTAP00000042139/1-1210 Len: 1263 Check: 5184 Weight: 1.00 Name: ENSTTRP00000009792/1-1156 Len: 1263 Check: 3564 Weight: 1.00 Name: bmy_01710T0/1-1244 Len: 1263 Check: 7311 Weight: 1.00 Name: BACU001221/1-1015 Len: 1263 Check: 4677 Weight: 1.00 // 1 50 ENSP00000313759/1-1217 MAAGRAQVPS S-EQAWLEDA QVFIQKTLCP AVKEPNVQLT PLVIDCVKTV ENSBTAP00000042139/1-1210 -ADCLSETKT SEEQAWLEVA QAFIQETLCP PGKEPDVQLA QLVIDCVKTT ENSTTRP00000009792/1-1156 MAACRAEAHG S-EQAWLEAA QAFIEETLCP PGKEPDVQLT QLVIDCVKTV bmy_01710T0/1-1244 MAACRAEAPG S-EQAWLEAA QAFIEETLCP PGKEPDVQLT QLVIDCVKTI BACU001221/1-1015 MAACRAEVPG S-EQAWLEAA QAFIEEILCP PGEEPDVQLT QLVIDCVKTI 51 100 ENSP00000313759/1-1217 WLSQGRNQGS TLPLSYSFVS VQDLKTHQRL PCCSHLSWSS SAYQAWAQEA ENSBTAP00000042139/1-1210 WLSQGTSQGL TLPLSYSFVS VKDLRTHQRL PCCSHLSWSS TVYQAWAQEA ENSTTRP00000009792/1-1156 WLPQGRNQGL TLPLSYSFVS VKDLRTHQRL PCCSHLSWSS TAYQDWTKEA bmy_01710T0/1-1244 WLSQGRNQGL TLPLSYSFVS VKDLRTHQRL PCCSHLSWSS TAYQAWAKEA BACU001221/1-1015 WLSQGRNQGL MLPLSYSFVS VKDLRTHQRL PCCSHLSWSS TAYQAWAKEA 101 150 ENSP00000313759/1-1217 GPNGNPLPRE QLLLLGTLTD LSADLEQECR NGSLYVRDNT GVLSCELIDL ENSBTAP00000042139/1-1210 GPRGVPLPRE RLLLLGTLTD LSGNLEQECR NGSLYIRDNT GALDCELIDL ENSTTRP00000009792/1-1156 GPRGVPLPRE RLLLLGTVTD LSGDLEQECR NGSLYIRDNT GTLGCELIDL bmy_01710T0/1-1244 GPCGVPLPRE RLLLLGTLTD LSGDLEQECR NGSLYIRDNT GTLGCELIDL BACU001221/1-1015 GPCGVPLPRE RLLLLGTLTD LSGDLEQECR NGSLYIRDNT GTLGCELIDL 151 200 ENSP00000313759/1-1217 DLSWLGHLFL FPRWSYLPPA RWNSSGEGHL ELWDAPVPVF PLTISPGPVT ENSBTAP00000042139/1-1210 DLSWLGHLFL FPSWSYLPSL M-KSPGEGHV ELWGTPVPVF PLTISPGPLT ENSTTRP00000009792/1-1156 DLSWLGHLFL -PNWSY-PPA --SPSGEGH- ELW-APVPVF PLTISPGPLT bmy_01710T0/1-1244 DLSWLGHLFL FPSWSYLPPA M-KSSGEGHL ELWGAPVPVF PLTVSPGPLT BACU001221/1-1015 DLSWLGHLFL FPSWSYLPPA M-KSSGEGHL ELWGAPVPVF PLTISPGPLT 201 250 ENSP00000313759/1-1217 PIPVLYPESA SCLLRLRNKL RGVQRNLAGS LVRLSALVKS KQKAYFILSL ENSBTAP00000042139/1-1210 PIPVVYPEMA SRLLRYRSKH RNVQPNLAGN LIRFSALVKS QKKAYFVLFL ENSTTRP00000009792/1-1156 PIPVLYPEMA SHLLRHRSKH RTVQPNLAGE LVRLSALVTS RRKAYFILSL bmy_01710T0/1-1244 PIPVLYPEMA SRLLRHRSKH RNVQPNLAGE LVRLSALVKS RKKSYFILSL BACU001221/1-1015 PIPVLYPEMA SRLLRHRSKH RNVQPNLAGE LVRLSALVKS RKKSYFILSL 251 300 ENSP00000313759/1-1217 GRSHPAVTHV SIIVQVPAQL VWHRALRPGT AYVLTELRVS KIRGQRQHVW ENSBTAP00000042139/1-1210 GGSSPAGTQV SVIVQVPAQL VWHRALCPGR AYVLMELRVS KLPGHRYRVW ENSTTRP00000009792/1-1156 GGSSPVGSHV SVIVQIPAQL VWHRALWPHK AYVLTELRAS KLPGHRYRIW bmy_01710T0/1-1244 GGSSPVGSHV SVVVQVPAQL VWHRALWPHK AYVLTELRVS KLPGHRCRIW BACU001221/1-1015 GGSSPVGSHV SVIVQ----- ---------- AYVLTELRVS KLPGHRCRIW 301 350 ENSP00000313759/1-1217 MTSQSSRLLL LKPECVQELE LELEGPLLEA DPKPLPMPSN SEDKKD--PE ENSBTAP00000042139/1-1210 MTSTSSQLLP LKPECVRELE LELAGVPLEA DPQSLPRPSS PQDKKRPGPD ENSTTRP00000009792/1-1156 MTSPSSRLLP LKPECVRELE LELEGAPLET NPQPLPILSN PQDKKGPGPD bmy_01710T0/1-1244 MTSPSSQLLP LKPECVRELE LELEGAPLET SPQPLPILGS PQGEKGPGPD BACU001221/1-1015 MTSPSSQLLP LKPECVRELE LELEGAPLET SPQPLPIPGS PQGKKDPGPD 351 400 ENSP00000313759/1-1217 SLVRYSRLLS YSGAVTGVLN EPAGLYELDG QLGLCLAYQQ FRGLRRVMRP ENSBTAP00000042139/1-1210 CLVRDSILLS YTGMVTDTLN QPAGLYELDR KLELCLAYQQ FRGLRRVVRP ENSTTRP00000009792/1-1156 GLVRDSRLLS YTGTVTGTLN QPAGLYELDG QLGLCLAYQQ FHGLRRVVRP bmy_01710T0/1-1244 GLVRDSRLLS YTGTVTGTLN QPAGLYELDG QLGLCLAYQR FRGLRRVVRP BACU001221/1-1015 GLVRDSRLLS YTGTVTGTLN QPAGLYELDG QLGLCLAYQQ FCDLRRVVRP 401 450 ENSP00000313759/1-1217 GVCLQLQDVH LLQSVGGGTR RPVLAPCLRG AVLLQSFSRQ KPGAHSSRQA ENSBTAP00000042139/1-1210 GVRLELQDVH LLQSVGGGTR RPILAPCLRG AVLLRGFSHQ VPETQFSHQV ENSTTRP00000009792/1-1156 GVRLELQDVH LLQSMGGGTR RPMLAPCLRG AVLLQGFSRL MPETQSSHRA bmy_01710T0/1-1244 GVRLEVQDVH LLQSMGGGTR RPMLAPCLRG AVLLQGFSRL MPETQSSHRA BACU001221/1-1015 GVRLELQDVH LLQSVGGGTR RPVLAPCLRG AVLLQGFSPL MPETQSSHRA 451 500 ENSP00000313759/1-1217 YGASLYEQLV WERQLGLPLY LWATKALEEL ACKLCPHVLR HHQFLQHSSP ENSBTAP00000042139/1-1210 PQASLYEQLV WEHQLGLPIY LWATKALEDL ACKLCPHVLR YHQFLKYSSP ENSTTRP00000009792/1-1156 PRASLYEQLV WEHQLGLPLY LWASKALEEL ACKLCPHVLR HHQFLQHSSP bmy_01710T0/1-1244 PGASLYEQLV WEHQLGLPLY LWATKALEEL ACKLCPHVLR HHQFLQHSSP BACU001221/1-1015 PGASLYEQLV WEHQLGLPLY LWATKALEEL ACK------- ---------- 501 550 ENSP00000313759/1-1217 GSPSLGLQLL APTLDLLAPP GSPVRNAHNE ILEEPHHCPL QKYTRLQTPS ENSBTAP00000042139/1-1210 GDPSLGLQIL APILEVLIPP GCPGRNTHSE ILEEPHHCPL QKYTQLQTPC ENSTTRP00000009792/1-1156 GNPSLGLQIL APTLEVLVPP GCPGRNTHNE ILEEPHHCPL QKYARLQTPC bmy_01710T0/1-1244 GNPSLGLQIL APTLEVLVPP GCPGRNTHNE ILDEPHRCPL QKYARLQTPC BACU001221/1-1015 -----GF--- ---------- ---------- ---------- -------SPA 551 600 ENSP00000313759/1-1217 SFPTLATLKE EGQRKAWASF DPKALLPLPE ASYLPSCQLN RRLAWSWLCL ENSBTAP00000042139/1-1210 FFPTLAFLKE EAKRRAWASF DPKTLLPLPE ASHLPSWQLN QRLAWSWQCL ENSTTRP00000009792/1-1156 SFPTLAALKE EGKCRAWASF DPKTLLPLPE ASHLPSCQLN QRLAWSWLCL bmy_01710T0/1-1244 SFPTLAALKE EGKCRAWASF DPKTLLPLPE ASHLPSCQLN QRLAWSWLCL BACU001221/1-1015 QLPTQSA--- ---------- -PGLVLALPA A--------- -------LCL 601 650 ENSP00000313759/1-1217 LPSAFCPAQV ---------- ---------- ---------- ---------L ENSBTAP00000042139/1-1210 LPSAFRPAPV ---------- ---------- ---------- ---------L ENSTTRP00000009792/1-1156 LPSAFHPAPV ---------- ---------- ---------- ---------L bmy_01710T0/1-1244 LPSAFHPAPV SAAPAGLRGL PLFAISTTTT VVLSCHFDYT SLLTRMLRLF BACU001221/1-1015 PPGP------ ---------- ---------- ---------- ---------- 651 700 ENSP00000313759/1-1217 LGVLV---AS SHKGCLQLRD QSGSLPCLLL AKHSQPLSDP RLIGCLVRAE ENSBTAP00000042139/1-1210 LGILV---PS SRKGCLQLRD QSGSLSCLLL AQPLQPLTDP RLIGCLVKAD ENSTTRP00000009792/1-1156 LGILV---PS SRKGCLRLQD QSGSLPCVLL AKPSQPLADP GLIGCLVRAE bmy_01710T0/1-1244 LAPLIRSPAA TRRGCLRLQD QSGSLPCLLL AKPSQPLTDP GLIGCLVRAE BACU001221/1-1015 ---------- ---------- ---------- ---------- ---GCLVRAE 701 750 ENSP00000313759/1-1217 RFQLIVERDV RSSFPSWKEL SMPGFIQKQQ ARVYVQFFLA DALILPVPRP ENSBTAP00000042139/1-1210 RFQLVIERNV RSSFPSWKEL STTDFIQKKQ ARVYVQFLLA DALILSVPRP ENSTTRP00000009792/1-1156 RFQLVVERNV RSNFPSWKEL SMTGFMQKKQ ARVYVQIFLA DALILSVPRP bmy_01710T0/1-1244 RFQLVVERNV RSSFPSWKEL SMTGFIQKKQ ARVYVQIFLA DALILSVPRP BACU001221/1-1015 RFQLVVERNV RSSFPSWKEL SMTGFIQKKQ ARVYVQIFLA DALILSVPRP 751 800 ENSP00000313759/1-1217 CLHSATPST- PQTDPTGPEG PHLGQSRLFL LCHKEALMKR NFCVPPGASP ENSBTAP00000042139/1-1210 VLHSATSSTP PRTEPSPPEG PHIEQSRLFL LSHKEALMKR NFSVPPSASS ENSTTRP00000009792/1-1156 VLHSATSSRP PQTEPSLPEG PHIGQSRLFL LSHKEALMKR NFCVPPGASS bmy_01710T0/1-1244 VLHSATSSTP PQTEPSLPEG PHIGQSRLFL LSHKEALMKR NFCVPPGASS BACU001221/1-1015 VLHSATSSTP PQTEPSLPEG PHIGQSRLFL LSHKEALMKR NFCVPPGASS 801 850 ENSP00000313759/1-1217 EVPKPALSFY VLGSWLGGTQ RKEGTGWGLP EPQGNDDNDQ KVHLIFFGSS ENSBTAP00000042139/1-1210 EVPQPTLSFH VLGRWLGGTQ RKEGTGWGPP EPKEDENSDQ KVLLLFLGSS ENSTTRP00000009792/1-1156 EVPKPTLSFL VLGSWLGGTQ RKEGTGWGPP EPREGENSDQ KVLLIFLSSS bmy_01710T0/1-1244 EVPKPTLSFL VLGSWLGGTQ RKEGTGWGPP EPREDENSDQ KVLLIFLSSS BACU001221/1-1015 EVPKPTLSFL VLGSWLGGTQ KKEGTGWGPP EPREDENSDQ KVLLIFLSSS 851 900 ENSP00000313759/1-1217 VRWFEFLHPG QVYRLIAPGP ATPMLFEKDG SSCISRRPLE LAGCASCLTV ENSBTAP00000042139/1-1210 VRWFEFLHPG HVYRLVASGP PTLMLFEEGG SSCVSQHPLE LAGCASCLTV ENSTTRP00000009792/1-1156 VRWFEFLHPG QVYRLVPD-- LTPMLFKEGG SSCVSLRPPE LAGCASCLTV bmy_01710T0/1-1244 VRWFEFLHPG QVYRLVVPGP PTPMLFKEGG SSCVSQRPPE LAGCASCLTV BACU001221/1-1015 VRWFEFLHPG QVYRLVVPGP PTPMLFKEGG SSCVSQRPPE LAGCASCLTV 901 950 ENSP00000313759/1-1217 QDNWTLELES SQDIQDVLDA NKSLPESSLT DLLSDNFTDS LVSFSAEILS ENSBTAP00000042139/1-1210 QDEWTVELAS SQDIPEVLGI RPTLPESSLT DLLSGNFADS LVSFSAEIVS ENSTTRP00000009792/1-1156 QDEWTLELAS SQDIPEVLGI SRALPESSLT DLLSGNFTDS LVSFSAEILS bmy_01710T0/1-1244 QDEWTLELAS SQDIPEVLGI SRALPESSLT DLLSDNFTDS LVSFSAEILS BACU001221/1-1015 QDEWTLELAS SQDIPEVLGI SRALPESSLT DLLSDNFTDS LVSFSAEILS 951 1000 ENSP00000313759/1-1217 RTLCEPLVAS LWMKLGNTGA MRRCVKLTVA LETAECEFPP HLDVYIEDPH ENSBTAP00000042139/1-1210 H--------- LWMKPGSSGA VRRCVKLTVA LETADYKFPP HLDVYIEDPH ENSTTRP00000009792/1-1156 H--------- LWIKPGSSGA TRRCVKLTVA LETADCEFPP HLDIYIEDPH bmy_01710T0/1-1244 H--------- LWIKPGSSGA TRRCVKLTVA LETADCEFPP HLDIYIEDPH BACU001221/1-1015 H--------- LWIKPGSSGA TRRCVKLTVA LETADCEFPP HLDIYIEDPH 1001 1050 ENSP00000313759/1-1217 LPPSLGLLPG ARVHFSQLEK RVSRSHNVYC CFRSSTYVQV LSFPPETTIS ENSBTAP00000042139/1-1210 LPPPLGLLPG ARVYFHQLEK RVSRSHNVYC CFRSSTCVQV LHFPPDTTVS ENSTTRP00000009792/1-1156 LPPPRGLLPG ARVYFNQLEK KVSRSHNVYC CFRSSTYVQV LSFPPDTTIS bmy_01710T0/1-1244 LPPPQGLLPG ARVYFNQLEK KVSRSHNVYC CFRSSTCVQV LSFPPDTTIS BACU001221/1-1015 LPPPQGLLPG ARVYFNQLEK KVSRSHNVYC CFRSSTCVQV LSFPPDTTIS 1051 1100 ENSP00000313759/1-1217 IPLPHIYLAE LLQGGQSPFQ ATASCHIVSV FSLQLFWVCA YCTSICRQGK ENSBTAP00000042139/1-1210 APLPHIYLAE LLQGDKAPFR ATASCHVVSV FSLHLLWVCA HCTSICPQGR ENSTTRP00000009792/1-1156 APLPHIYLAE LLQGEKAPFR ATASCHVVLV FSLQLLWVCA HCTSICPQGR bmy_01710T0/1-1244 APLPHIYLAE LLQGDKAPFR ATASCHVVSV FSLQLLWVCA HCTSICPQGR BACU001221/1-1015 APLPHIYLAE LLQGDKAPFR ATASCHVVSV FSLQLLWVCA HCTSICPQGR 1101 1150 ENSP00000313759/1-1217 CTRLGSTCPT QTAISQAIIR LLVEDGTAEA VVTCRNHHVA AALGLCPREW ENSBTAP00000042139/1-1210 CPRQSPACPT QTSVSQASIR LLVEDGTAEA VVTCRNHQVA AVLGLCPSEW ENSTTRP00000009792/1-1156 CTRQSPACPT QTSISQASIR LLVEDGTAEA VVTCRNHQVA AALGLCPSEW bmy_01710T0/1-1244 CTRQSPACPT QT-------- LLVEDGTAEA VVTCRNHQVA AALGLCPSEW BACU001221/1-1015 CTRQSPACPT QTSISQASIR LLVEDGTAEA VVTCRNHQVA AALGLCPSEW 1151 1200 ENSP00000313759/1-1217 ASLLDFVQVP GRVVLQFAGP GAQLESSARV DEPMTMFLWT LCTSPSVLRP ENSBTAP00000042139/1-1210 TSLLEFVRGP GKVALQFTGP GAQLESSAEV DEPLTLFLWT LCTSFSVLRP ENSTTRP00000009792/1-1156 TSLLELVRGP GTVALQFTGP GAQPESSAKT DEPLTLFLWT LCTSFSVLRP bmy_01710T0/1-1244 TSLLEFVRGP GRVALQFTGP GAQPESSAKT DEPLTLFLWT LCTSFSVLRP BACU001221/1-1015 TSLLEFVRGP GRVALQFTGP GAQPE----- ---------- ---------- 1201 1250 ENSP00000313759/1-1217 IVLSFELERK PSKIVPLEPP RLQRFQCGEL PFLTHVNPRL RLSCLSIRES ENSBTAP00000042139/1-1210 MVLSFELERK PSKIIPLEAP RLQRFQCGES PFLTRVNPKI RLSCLSIQEH ENSTTRP00000009792/1-1156 IVLSFELEKN -SKII----- ---------- -------PL- ---------- bmy_01710T0/1-1244 IVLSFELEKK PSKIIPLEPP RLQRFQCGDL PFLTRVNPRI RLSCLSIQEP BACU001221/1-1015 ---------- ------VEPP RLQRFQCGEL PFLTRVNPRI RLSCLSIQEP 1251 1300 ENSP00000313759/1-1217 EYSSSLGILA SSC ENSBTAP00000042139/1-1210 EHPNALGALV SSC ENSTTRP00000009792/1-1156 ---------- --- bmy_01710T0/1-1244 EHPSALGALA SSC BACU001221/1-1015 EHPSALGALA SSC