KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:10 2014 Check: 00 .. Name: ENSTTRP00000000647/1-289 Len: 292 Check: 3387 Weight: 1.00 Name: ENSP00000345826/1-287 Len: 292 Check: 5566 Weight: 1.00 Name: ENSBTAP00000042158/1-254 Len: 292 Check: 6309 Weight: 1.00 Name: bmy_00231T0/1-271 Len: 292 Check: 3572 Weight: 1.00 Name: BACU011288/1-235 Len: 292 Check: 8256 Weight: 1.00 // 1 50 ENSTTRP00000000647/1-289 FPSLPPLGRV KVRGGPVGLG PPGAADLESG --SLLRNQVM AELEFVEITV ENSP00000345826/1-287 ---MHRLMGV NSTAAAAA-G QPNVSCTCNC KRSLFQSMEI TELEFVQIII ENSBTAP00000042158/1-254 ---------- ---------- ---------- -------MEI TELEFVEITI bmy_00231T0/1-271 ---MHRLMGV NSTAAAAAAG QPNVSCTCNC KRSLFQSMEI TELEFVEITI BACU011288/1-235 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000647/1-289 IVVVVMVMVV VITCLLSHYK LSARSFIGRH SQGRRREDAL SSEGCLWPSE ENSP00000345826/1-287 IVVVMMVMVV VITCLLSHYK LSARSFISRH SQGRRREDAL SSEGCLWPSE ENSBTAP00000042158/1-254 IVVVVMVMVV VITCLLSHYK LSARSFIGRH SQSRRREDAL SSEGCLWPSE bmy_00231T0/1-271 IVVVVMVMVV VITCLLSHYK LSARSFIGRH SQGRRREDAL SS-------- BACU011288/1-235 -------MVV VITCLLSHYK LSARSFIGRH SQGRRREDAL SSEGCLWPSE 101 150 ENSTTRP00000000647/1-289 STVSGSGIPE PQVYAPPRPT DRLAVPAFAQ RDRFHRFQPT YPYLQHEIDL ENSP00000345826/1-287 STVSGNGIPE PQVYAPPRPT DRLAVPPFAQ RERFHRFQPT YPYLQHEIDL ENSBTAP00000042158/1-254 STVSGNGIPE PQVYAPPRPT DRLAVPAFAQ RDRFHRFQPT YPYLQHEIDL bmy_00231T0/1-271 ---------- PQVYAPPRPT DRLAVPAFAQ RDRFHRFQPT YPYLQHEIDL BACU011288/1-235 STVSGSGIPE PQVYAPPRPT DRLAVPAFAQ RDRFHRFQPT YPYLQHEIDL 151 200 ENSTTRP00000000647/1-289 PPTISLSDGE EPPPYQGPCT LQLRDPEQQL ELNRESVRAP PNRTIFDSDL ENSP00000345826/1-287 PPTISLSDGE EPPPYQGPCT LQLRDPEQQL ELNRESVRAP PNRTIFDSDL ENSBTAP00000042158/1-254 PPTISLSDGE EPHPTRA-LQ LQLRDPEQQL ELNRESVRAP PNRTIFDSDL bmy_00231T0/1-271 PPTISLSDGE EPPPYQGPCT LQLRDPEQQL ELNRESVRAP PNRTIFHSDL BACU011288/1-235 PPTISLSDGE EPPPYQGPCT LQLRDPEQQL ELNRESVRAP PNRTIFHSDL 201 250 ENSTTRP00000000647/1-289 MDSAMLGGSC PPSSNSGISA TCYGGGGXXX XXXXXXXXXX XXXXX-XXXX ENSP00000345826/1-287 MDSARLGGPC PPSSNSGISA TCYGSGGRME GPPPTYSEVI GHYPG-SSFQ ENSBTAP00000042158/1-254 MESAMLGGPC PPSSNSGISA TCYGGGGRME GPPPTYSEVI GHYPGASTFQ bmy_00231T0/1-271 MGSAALGGPC PPSSNSGISA TCYGGGGRME GPPPTYSEVI GHYPGASTFQ BACU011288/1-235 MGSAALGGPC PPSSNSGISA TCYGGGGRME GPPPTYSEVI GHYPGASTFQ 251 300 ENSTTRP00000000647/1-289 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXEKDKQKGH PL ENSP00000345826/1-287 HQQSSGPPSL LEGTRLHHTH IAPLESAAIW SKEKDKQKGH PL ENSBTAP00000042158/1-254 HQQSSGPASL LEGTRLHPAH IAPLESTAAW SKEKDKQKGH PL bmy_00231T0/1-271 HQQSSGPASL LEGTRLHPAH IAPLESTAAW SKEKDKQKGH PL BACU011288/1-235 HQQSSGPASL LEGTRLHPAH IAPLESTAAW SKEKDKQKGH PL