KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:10 2014 Check: 00 .. Name: ENSP00000244769/1-815 Len: 883 Check: 2081 Weight: 1.00 Name: ENSBTAP00000042169/1-817 Len: 883 Check: 6946 Weight: 1.00 Name: BACU017626/1-712 Len: 883 Check: 6828 Weight: 1.00 Name: bmy_00684T0/1-646 Len: 883 Check: 7999 Weight: 1.00 Name: ENSTTRP00000013915/1-820 Len: 883 Check: 2019 Weight: 1.00 // 1 50 ENSP00000244769/1-815 MKSNQERSNE CLPPKKREIP ATSRSSEEKA PTLPSDNHRV EGTAWLPGNP ENSBTAP00000042169/1-817 MKSNQERSNE CLPPKKREIP ATSRPSSED- KAVPSDNHRA ENAAWLPG-- BACU017626/1-712 ---------- ---------- ---------- ---------- ---------- bmy_00684T0/1-646 MKSNQERSNE CLPPKKREIP ATSRPSEDKA TAVPSDNHRA EGVAWLPGHA ENSTTRP00000013915/1-820 MKSNQERSNE CLPPKKREIP ATSRPSEDKA TAVPSDNHRA EGVAWLPGHA 51 100 ENSP00000244769/1-815 GGRGHGGGRH GPAGTS---- VELGLQQGIG LHKALSTGLD YSPPSAPRSV ENSBTAP00000042169/1-817 -ARGHVGGRL GPAGPPAELA AELGLQQGIG LHKALSTGLD YSPPSAPRSV BACU017626/1-712 ---------- ---------- ---------- ---------- ---------- bmy_00684T0/1-646 GGRGHAGGRL GPAGPP---- AELGLQQGIG LHKALSAGLD YSPPSAPRSV ENSTTRP00000013915/1-820 SGRGHAGGRL GPAGPP---- AELGLQQGIG LHKALSAGLD YSPPSAPRSV 101 150 ENSP00000244769/1-815 PV---ATTLP AAYATPQP-G TPVSPVQYAH LPHTFQFIGS SQYSGTYASF ENSBTAP00000042169/1-817 PAVTSTTTMP AAYPPPPPSG APVSPVQYAH LPHTLQFIGS SQYSGPYAGF BACU017626/1-712 --------MP -AYPPPQS-G APVSPVQYAH LPHTLQFIGS SQYGGPYAGF bmy_00684T0/1-646 PA---TTTMP -AYPPPQS-G APVSPVQYAH LPHTLQFIGS SQYGGPYAGF ENSTTRP00000013915/1-820 PA---TTTMP -AYPPPQS-G APVSPVQYAH LPHTLQFIGS SQYGGPYAGF 151 200 ENSP00000244769/1-815 IPSQLIPPTA NPVTSAVASA AGATTPSQRS QLEAYSTLLA NMGSLSQTPG ENSBTAP00000042169/1-817 IPSQLISPTA SPVTSAVASA VGAATPAQRS QLEAYSSLLA DMGGLSRASG BACU017626/1-712 IPSQLISPTS SPVTSAVASA AGAATPSQRS QLEAYSTLLA NMGGLSQASG bmy_00684T0/1-646 IPSQLISPTA SPVTSAVASA AGAATPSQRS QLEAYSTLLA NMGGLSQASG ENSTTRP00000013915/1-820 IPSQLISPTA SPVTSAVASA AGAATPSQRS QLEAYSTLLA NMGGLSQASG 201 250 ENSP00000244769/1-815 HKAEQQQQQQ QQQQQQHQHQ QQQQQQQQQQ QQQHLSRAPG LITPGSPPPA ENSBTAP00000042169/1-817 HKAE------ ---------- ----PPPPPP PPQHLGRTAG LLPPGSPPHP BACU017626/1-712 HKAE------ ---------- --------QQ QQQHLGRTAG LLPPGSPPPT bmy_00684T0/1-646 HKSE------ ---------- ---------L QQQHLGRTAG LLPPGSPPPT ENSTTRP00000013915/1-820 HKAE------ ---------- ---------- QQQHLGRTAG LLPPGSPPPT 251 300 ENSP00000244769/1-815 QQNQYVHISS SPQNTGRTAS PPAIPVHLHP HQTMIPHTLT LGPPSQVVMQ ENSBTAP00000042169/1-817 QQSQYVRISS SPQNAARPAS PPTLPVHLHT HPTMIPHTLT LGPSPQVVVQ BACU017626/1-712 QQNQYMHISS SPQSAARPAS PPAIPVHLHP HQTMIPHTLT LGPSPQVVVQ bmy_00684T0/1-646 QQNQYMHISS SPQSAARPAS PPAIPVHLHP HQTMIPHTLT LGPSPQVVVQ ENSTTRP00000013915/1-820 QQNQYMHISS SPQSAARPAS PPAIPVHLHP HQTMIPHTLT LGPSPQVVVQ 301 350 ENSP00000244769/1-815 YADSGSHFVP REATKKAESS RLQQAIQAKE VLNGEMEKSR RYGAPSSADL ENSBTAP00000042169/1-817 YTDSSSHFVT REATKKAESS RLQQAMQAKE MLNGEVEKGR RYGAPPAADL BACU017626/1-712 YTDSGSHFVT REATKKAESS RLQQGVQAKE ILNGEMEKGR RYGAPTAADL bmy_00684T0/1-646 YTDSGSHFVT REATKKAESS RLQQGVQAKE ILNGEMEKGR RYGAPTAADL ENSTTRP00000013915/1-820 YTDSGSHFVT REATKKAESS RLQQGAQAKE ILNGEMEKGR RYGAPTAADL 351 400 ENSP00000244769/1-815 GLGKAGGKSV PHPYESRHVV VHPSPSDYSS RDPSGVRASV MVLPNSNTPA ENSBTAP00000042169/1-817 GLVKAASKAV PHPYESRHVV VHPGPADYSV RDASGVRASV MVLPNSSTPA BACU017626/1-712 GLVKAGGKAV PHPYESRHVV VHPSPADYGG RDSSGVRASV MVLPNSSTPA bmy_00684T0/1-646 GLVKAGGKAV PHPYESRHVV VHPSPADYGG RDSSGVRASV MVLPNSSTPA ENSTTRP00000013915/1-820 GLVKAGGKAV PHPYESRHVV VHPSPADYGS RDSSGVRASV MVLPNSSTPA 401 450 ENSP00000244769/1-815 ADLEVQQATH REASPSTLND KSGLHLGKPG HRSYA----- ---------- ENSBTAP00000042169/1-817 ADLEGQQVTH RENSPSALND KSGLHLGKPG HRSYALSPQQ VLGPEGVK-- BACU017626/1-712 ADLEVQQVTH REASPSALND KSGLHLGKPG HRSYALSPQQ ALGPEGVKAA bmy_00684T0/1-646 ADLEVQQVTH REASPSALND KSGLHLGKPG HRSYALSPQQ ALGPEGVKAA ENSTTRP00000013915/1-820 ADLEVQQVTH REASPSALND KSGLHLGKPG HRSYA----- ---------- 451 500 ENSP00000244769/1-815 ----LSPHTV IQTTHSASEP LPVGLPATAF YAGTQPPVIG YLSGQQQAIT ENSBTAP00000042169/1-817 AVATLSPHTV IQTTHSASEA LPVGLPATAF YAGTQPPVIG YLSGQQQAIT BACU017626/1-712 AVATLSPHTV IQTTHSASEP LPVGLPATAF YAGTQPPVIG YLSSQQQAIT bmy_00684T0/1-646 AVATLSPHTV IQTTHSASEP LPVGLPATAF YAGTQPPVIG YLSSQQQAIT ENSTTRP00000013915/1-820 ----LSPHTV IQTTHSASEP LPVGLPATAF YAGTQPPVIG YLSSQQQAIT 501 550 ENSP00000244769/1-815 YAGSLPQHLV IPGTQPLLIP VGSTDMEASG AAPAIVTSSP QFAAVPHTFV ENSBTAP00000042169/1-817 YAGGLPPHLV IPGTQPLLIP VGSADLEGSG AASAIVTSSP QFAAVPHTFV BACU017626/1-712 YAGGLPPHLV LPGTQPLLIP VGSADMEGSG AAPAIVTSSP QFAAVPHTFV bmy_00684T0/1-646 YAGGLPPHLV LPGTQPLLIP VGSADMEGSG AASAIVTSSP QFAAVPHTFV ENSTTRP00000013915/1-820 YAGGLPPHLV LPGTQPLLIP VGSADMEGSG AASAIVTSSP QFAAVPHTFV 551 600 ENSP00000244769/1-815 TTALPKSENF NPEALVTQAA YPAMVQAQIH LPVVQSVASP AAA-PPTLPP ENSBTAP00000042169/1-817 TTALPKSENF GPEALVTQAA YPAMVQAQIH LPVAQSVASP AAAAPPTLPP BACU017626/1-712 TTALPKSENF SPEALVTQAA YPAMVQAQIH LPVVQSVASP AAA-PPTLPP bmy_00684T0/1-646 TTALPKSENF SPEALVTQAA YPAMVQAQIH LPVVQSVASP AAA-PPTLPP ENSTTRP00000013915/1-820 TTALPKSENF SPEALVTQAA YPAMVQAQIH LPVVQSVASP AAA-PPTLPP 601 650 ENSP00000244769/1-815 YFMKGSIIQL ANGELKKVED LKTEDFIQSA EISNDLKIDS STVERIEDSH ENSBTAP00000042169/1-817 YFMKGSIIQL ANGELKKVED LKTEDFIQSA EISTDLKIDS STVERIADSH BACU017626/1-712 YFMKGSIIQL ANGELKKVED LKTEDFIQSA EISNDLKIDS STVERIEDGH bmy_00684T0/1-646 YFMKGSIIQL ANGELKKVED LKTEDFIQSA EISNDLKIDS STVERIEDSH ENSTTRP00000013915/1-820 YFMKGSIIQL ANGELKKVED LKTEDFIQSA EISNDLKIDS STVERIEDSH 651 700 ENSP00000244769/1-815 SPGVAVIQFA VGEHRAQVSV --------EV LVEYPFFVFG QGWSSCCPER ENSBTAP00000042169/1-817 SPGVAVIQFA VGDHRAQVSV --------EV LVEYPFFVFG QGWSSCCPER BACU017626/1-712 NPGVAVIQFA VGDHRAQVTF IQITQVSVEV LVEYPFFVFG QGWSSCCPER bmy_00684T0/1-646 NPGVAVIQFA VGDHRAQVTF I-------QI TQHY------ ------CEER ENSTTRP00000013915/1-820 SPGVAVIQFA VGDHRAQVSV --------EV LVEYPFFVFG QGWSSCCPER 701 750 ENSP00000244769/1-815 TSQLFDLPCS KLSVGDVCIS LTLKNLKNGS VKKGQPVDPA SVLLKHSKAD ENSBTAP00000042169/1-817 TSQLFDLPCS KLSVGDVCIS LTLKNLKNGS VKKGQPVDPA SVLLKHSKAD BACU017626/1-712 TSQLFDLPCS KLSVGDVCIS LTLKNLKNGS VKKGQAVDPT S----HSKTD bmy_00684T0/1-646 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013915/1-820 TSQLFDLPCS KLSVGDVCIS LTLKNLKNGS VKKGQAVDPA SVLLKHSKTD 751 800 ENSP00000244769/1-815 GLAGSRHRYA EQENGINQGS AQMLSENGEL KFPEKMGLPA APFLTKIEPS ENSBTAP00000042169/1-817 GLAGSRHRYA EQENGISQGS AQMLSENGEL KFPEKIGLPA TPLLTKIEPS BACU017626/1-712 GLAGSRHRYA EQENGINQGS AQMLSENGEL KFPEKIGLPA VPLLTKIEPS bmy_00684T0/1-646 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013915/1-820 GLAGSRHRYA EQENGINQGS AQMLSENGEL KFPEKIGLPA VPLLTKIEPS 801 850 ENSP00000244769/1-815 KPAATRKRRW SAPESRKLEK SEDEPPLTLP KPSLIPQEVK ICIEGRSNVG ENSBTAP00000042169/1-817 KPAATRKRRW SAPETRKLEK SEDEPPLTLP KPSLISQEVK ICIEGRSNVG BACU017626/1-712 KPAATRKRRW SAPESRKLEK SEDEPPLTLP KPSLISQEVK ICIEGRSNVG bmy_00684T0/1-646 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013915/1-820 KPAATRKRRW SAPESRKLEK SEDEPPLTLP KPSLISQEVK ICIEGRSNVE 851 900 ENSP00000244769/1-815 K--------- ---------- ---------- --- ENSBTAP00000042169/1-817 K--------- ---------- ---------- --- BACU017626/1-712 K--------- ---------- ---------- --- bmy_00684T0/1-646 ---------- ---------- ---------- --- ENSTTRP00000013915/1-820 KKISNAFEDT NAMLFQIWVK QQSSVDRPGF LSC