KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:11 2014 Check: 00 .. Name: BACU011704/1-678 Len: 799 Check: 277 Weight: 1.00 Name: ENSP00000355760/1-774 Len: 799 Check: 1642 Weight: 1.00 Name: ENSBTAP00000042173/1-718 Len: 799 Check: 165 Weight: 1.00 Name: ENSTTRP00000009097/1-675 Len: 799 Check: 8273 Weight: 1.00 Name: bmy_12335T0/1-667 Len: 799 Check: 384 Weight: 1.00 // 1 50 BACU011704/1-678 ---------- ---------- ---------- ---------- ---------- ENSP00000355760/1-774 MWTPGGPPGS AGWDRRRLGA RLRAAFAGLQ ELQGLRATQQ ERVRGALALQ ENSBTAP00000042173/1-718 RRAPGGPPGP AGWDRRRAGA RLRAALAGLH ELRGPRARQQ ARGGGALAGP ENSTTRP00000009097/1-675 ---------- ---------- ---------- ---------Q ARVWGALAVQ bmy_12335T0/1-667 ---------- ---------- ---------- ---------- -MVFG----- 51 100 BACU011704/1-678 ---------- ---------- ---------- --NRLRLQDV GLKTHLDQLG ENSP00000355760/1-774 PPPAPAAPCG PHGLHGPEQQ LEAALAALQE QLSRLRQQDI GLKTHLDQLD ENSBTAP00000042173/1-718 PPPGPAAPRG P---RAQELP MEAALAALQD QLDRLRRQDV GLQTHLDQLD ENSTTRP00000009097/1-675 PPPGPAAPRG P---R-HELR LEAALAALQE QLNRLRLQDV GLKTHLDQLD bmy_12335T0/1-667 ---------- ---------- ---------- --NRLRLQDV GLKTHLEQLG 101 150 BACU011704/1-678 QQISELQLDV RRTSSEAPDS DSRPSSGFYE LSDGGSCSPS ASRTSVCSDC ENSP00000355760/1-774 LQISKLQLDV GTASGEALDS DSRPSSGFYE MSDGGSCSLS TSCASVCSDH ENSBTAP00000042173/1-718 RQISALQLDV RRGPGETADS DSRPSSGFYE LSDGGSCSLS TSCTSVCSDH ENSTTRP00000009097/1-675 QQISELQLDV RRTSSEAPDS DSRPSSGFYE LSDGGSCSLS TSCTSVCSDC bmy_12335T0/1-667 RQISELQLDV RRTPSEAPDS DSRPSSGFYE LSDGGSCSPS ASRTSVCSDC 151 200 BACU011704/1-678 VSSCPGAVLP ATP--TARPG AGDCRPRSAD ETTVCGVPLP AWEPQASEGG ENSP00000355760/1-774 ISPSLGSLLP VAQAHKARPS MGDWRPRSVD ETTV-----P AWRPQATEEG ENSBTAP00000042173/1-718 VSCSLGTLLP AAP--KARPG SGDCRPRSAD ETAVCGVPLP AWGPPASEEE ENSTTRP00000009097/1-675 VS-SLGAVLP AAP--KARPS AGDCRPRSAD ETTVCGVPLT AWEPQASEGG bmy_12335T0/1-667 VSSSPGAVLP ATP--KARPA AGDCRPRSAD ETTVCGVPLP AWEPQASEGG 201 250 BACU011704/1-678 ---ADQLLQ- ----GESRPR PVSTGDLERV LPAEVGLQKA RAHSKATSFL ENSP00000355760/1-774 ARPPGSVEDA GQPWGTFWPR PVSTGDLDRA LPADTGLQKA SADAELLGLL ENSBTAP00000042173/1-718 ---PGQLFQ- ----EEPRPR PVSTGDLERI LPADVGLQKA GAHPTAAPFL ENSTTRP00000009097/1-675 ----TPLLQ- ----GESRPR PVSTGDLERA LPAEVGLQKA RAHPKATSFL bmy_12335T0/1-667 ---AGQLLQ- ----GESRPR PVSTGDLERV LPAEVGLQKA RAHPKATSFL 251 300 BACU011704/1-678 CRGM------ -DPKYQCDLV SKGGREVYPY PSPLHAVALQ SPLFTLTKET ENSP00000355760/1-774 CQGVDIPLHV PDPKYRQDLV SQGGREVYPY PSPLHAVALQ SPLFVLTKET ENSBTAP00000042173/1-718 CHGV------ -DPKYQCDLV SRGGREVYPY PSPLHAVALQ SPLFALARET ENSTTRP00000009097/1-675 CHGM------ -DPKYQCDLV SKGGREVYPY PSPLHAVALQ SPLFTLTKET bmy_12335T0/1-667 CRGM------ -DPKYQCDLV SKGGREVYPY PSPLHAVALQ SPLFTLTKET 301 350 BACU011704/1-678 PPSDGHSPPS QPLLGATGPS STRTGLVLEA GP--ARAYIE RLLRLQGRGP ENSP00000355760/1-774 PQRGGPSFPR ESPRGPAGLN TIQTGPVLEA GPARARAYID RLLHLWGRET ENSBTAP00000042173/1-718 PQSEGHAPPH PPPASPAGPS SVRPGLAFEA GP--AAAYIE RLLRLRACGS ENSTTRP00000009097/1-675 APSDGHLPPS QPLPGATGPS PIRTGLGLEA GP--ASAYIE RLLRLQGRGP bmy_12335T0/1-667 PPNDGHSPPS QPLPGATGPS SIRTGLVLEA GP--ARAYIE RLLRLQGRGP 351 400 BACU011704/1-678 PARGSVGERG PPGREASLSP QGLGGRRADS EGGPEEPVCA RGRAEVGGEA ENSP00000355760/1-774 PAKGSEGEQG PLRHAASPSP QRQGGWSTDG GGRL--LVFA PGREDEGGPA ENSBTAP00000042173/1-718 A-------RG PPRGKASPAP LQLGARKVDG EGGLEKPACT PGRAVV---- ENSTTRP00000009097/1-675 PARGSVVERG PPGREASLSP QGLGVRGADS EGGLEKPVCA RGRAEVGGEA bmy_12335T0/1-667 PARGSVGERG PPGREASLSP QGLGGRRADS EGGLEKPVCA RGRAEVGGEA 401 450 BACU011704/1-678 QSGAARGHSL EQLGPVPLVR TLHPSSRPEE GPRPSRSCVH REARPGSPWL ENSP00000355760/1-774 QSRGAGRGGP QQQGYMPLEG PQQSGSLPEE GSKPSNSCVL RETMVQAS-- ENSBTAP00000042173/1-718 -SGAASGDGL ARPPPTPSVG TPRPSSHPEG ARGPCHGHVH LEACPDAPQL ENSTTRP00000009097/1-675 QSGAARGDSL EQPGPVPLVR TLHPSSRPEE GPRPSRSCVH REAV-QAP-- bmy_12335T0/1-667 QSGAARGHSL EQPGPVPLVH TLHPRSRPEE GPRPSRSCVH REACPGSPWL 451 500 BACU011704/1-678 GCGQGPAPCS PAQQPALDGW TGRGRA--PG GGAGGAGPXX XXXXXXXXXX ENSP00000355760/1-774 -------PSS KAQQTPSAQD YGRGNIISPS RMLD-KSPSP ASGHFAHPSF ENSBTAP00000042173/1-718 ACGRAPAPRC PAQPSVLAGW PGGGRW--PS GRVDGR---- ----CIHPAL ENSTTRP00000009097/1-675 -------PCL QGQQPLHGG- -GKGRS--PA -GSRGGGPPS GP-HCVRPL- bmy_12335T0/1-667 GCGQDPAPCS PAQQPALDGW TGRGRL--PG RGAGGEGPPR APGHCVHPHF 501 550 BACU011704/1-678 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX---- -XXXXXXXXX ENSP00000355760/1-774 AA--SLKMGP PKSKAEKIKR SPMDKVLRFA RQPLLLLDRP EGAHAAPQPS ENSBTAP00000042173/1-718 VASGASPPGP PKTKPVTVRR GPSNKTPGPG RPQLQW---- -GALGIPRP- ENSTTRP00000009097/1-675 ----AASLGP PKAKPVKIKR GASDKALRLG GPQLQW---- -GALGGPRP- bmy_12335T0/1-667 AATGASPAGP PKAKPVKIKR GASDKTLRLG GPQLQW---- -GALGDPQP- 551 600 BACU011704/1-678 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355760/1-774 LEWDPAHWPT GRGGLQRRPA LAWEAPGRSC SESTLYPMPV LVPLAVAPQE ENSBTAP00000042173/1-718 --------PP ESGVAPRRPT LAAEAPGRSC SESSLYPVSF FVPLLVARRE ENSTTRP00000009097/1-675 --------PP ESGGGLRRPP LARAAPGRSC SESSLYPMSV FVPLLVARPE bmy_12335T0/1-667 --------PP ESGGGLRRPA LAREAPGRSC SESSLYPVSL FVPLLVARRE 601 650 BACU011704/1-678 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355760/1-774 SHRTSAQALF PFEASLLTS- --VARRKHRR WQSTVEISAR ARLASCPESN ENSBTAP00000042173/1-718 AHRASAQALF PWEAAPLGAS GGVARKRQRR WRSSADVSAR AR----PDPG ENSTTRP00000009097/1-675 GHQVSAQALF PLEAAPLVAS RGEARRKQRR WQSSVEISAR AR----PDPS bmy_12335T0/1-667 GHQASAQALF PLEAAPLVAT GGEARRKQRR WQSSVEISAR AR----PDPS 651 700 BACU011704/1-678 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355760/1-774 LGPPRPVARR AGGP---LAR GRPSLVRQDA YTRSDSEPSK HSAECDPRFP ENSBTAP00000042173/1-718 LGPHRPAARR GGGPRPVCAR PRPLPALQDA RARSASDGSE RSAECASLLL ENSTTRP00000009097/1-675 LGPHRPAARR GGGP----AR VRPRLPRQDA RARSGSDGSE RSAECASLLR bmy_12335T0/1-667 LGPHRPAARR GGGPRPVCAR PRPRLPRQDA RARSGSDGSE RSAESVSLFR 701 750 BACU011704/1-678 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355760/1-774 SVIPETSEGE SSDHTTNRFG DRESSSSDEE GGAQSRDCDL ALGYVAAGHA ENSBTAP00000042173/1-718 STAAESSGDE ASDHTTSRFG DAESSGSDSG GG-------- -------RR- ENSTTRP00000009097/1-675 STVAESSGDE ASDHTANRFG DAESSGSTSE GS-------- -------GQG bmy_12335T0/1-667 STVAESSGDE ASDHTANRFG DGESSGSTSE GG-------- -------GQG 751 800 BACU011704/1-678 XXXXXXAGAP ASGPRPAPGP -LCR-RCPGC VASRPPRP-- --------- ENSP00000355760/1-774 ELAWTQEAPV SSGPLLSPVP KLCRIKASKA LKKKIRRFQP TALKVMTMV ENSBTAP00000042173/1-718 ---LGQRARS SSRLALPPVP RLCRVKASKA LKRKIRRFQP AALKVMTMV ENSTTRP00000009097/1-675 G--TGQRAPA SSRPPLPPVP RLCRVKASKA LKKRLRRFQP AALKVMTMV bmy_12335T0/1-667 GGSSSQRAPA SSRPPLPPVP RLCRVKASKA LKKKIRRFQP AALKVMTMV