KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:12 2014 Check: 00 .. Name: ENSP00000252542/1-953 Len: 1168 Check: 2048 Weight: 1.00 Name: ENSTTRP00000012893/1-947 Len: 1168 Check: 6926 Weight: 1.00 Name: ENSBTAP00000042180/1-954 Len: 1168 Check: 4914 Weight: 1.00 Name: bmy_06940T0/1-852 Len: 1168 Check: 7540 Weight: 1.00 Name: BACU002589/1-1110 Len: 1168 Check: 7352 Weight: 1.00 // 1 50 ENSP00000252542/1-953 ---------- ---------- ---------- --MAETLPGS GDSGPGTASL ENSTTRP00000012893/1-947 ---------- ---------- ---------- --MAETLAGX XXXXXXXXXX ENSBTAP00000042180/1-954 ---------- ---------- ---------- --MAETLAGS SDSGSGTAAV bmy_06940T0/1-852 ECVFLSGGAI LCSEQLQPPA VCGISGGDRK PGMAETLAGS GDSGSGTAAV BACU002589/1-1110 ---------- ---------- ---------- --MAETLAGS GDSGSGTAAV 51 100 ENSP00000252542/1-953 GPGVAETGTR RLSELRVIDL RAELKKRNLD TGGNKSVLME RLKKAVKEEG ENSTTRP00000012893/1-947 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXAVKEEG ENSBTAP00000042180/1-954 VSGVSEVGTR RLSDLRVIDL RAELKKRNLD TGGNKSVLME RLKKAVKEEG bmy_06940T0/1-852 VSGASEVGTR RLSDLRVIDL RAELKKRNLD TGGNKSVLME RLKKAVKEEG BACU002589/1-1110 VSGASEIGTR RLSDLRVIDL RAGLKKRNLD TGGNKSVLME RLKKAVKEEG 101 150 ENSP00000252542/1-953 QDPDEIGIEL EATSKKSAKR CVKGLKMEEE GTEDNGLEDD SRDGQEDMEA ENSTTRP00000012893/1-947 QDPDEIGVAL EATSKRTTKK CVKGQKTEEE GTEDNGLEED SRDGQEDMEA ENSBTAP00000042180/1-954 QDPDEIGIAL EATSKK-TKR FVKEQKAEEE GTEDNGLEED SRDGQEDMEA bmy_06940T0/1-852 QDPDEIGIAL EATSKRTTKK CVKGQKTEEE GTEDNGLEED SRDGQEDMEA BACU002589/1-1110 QDPDEIGIAL EATSKRATKK CVKGQKTEEE GTEDNGLEED SRDGQEDMEA 151 200 ENSP00000252542/1-953 SLENLQNMGM MDMSVLDETE VANSSAPDFG EDGTDGLLDS FCDSKEYVAA ENSTTRP00000012893/1-947 SLESLQNIDM MDVNVLEETE VENSGAPDFG EDGADSILES LCESKDYVAV ENSBTAP00000042180/1-954 SLEGLQSIDM MDVNVLEETE VENSAVPDFG EDGTDSILES LCESKDYVAT bmy_06940T0/1-852 SLESLQNIDM MDVNVLEETE VENSGAPDFG EDGADSILES LCESKDYVAV BACU002589/1-1110 SLESLQNIDM MDVNVLEETE VENSGAPDFG EDGADSILES LCESKDYVAV 201 250 ENSP00000252542/1-953 QLRQLPAQPP EHAVDGEGFK NTLETSSLNF KVTPDIEESL LEPENEKILD ENSTTRP00000012893/1-947 QLRELPAQFT GHSVDGEGFE NTLDASSLDF KVPPDIEEPL LEPENEKILD ENSBTAP00000042180/1-954 QLRELPAQFT GHAVDGEGFE NTLDASSLDF KVPPDIEEPL LEPENEKILD bmy_06940T0/1-852 QLRELPAQFT GHSVDGEGFE NTLDASSLDF KVPPDIEEPL LEPENEKILD BACU002589/1-1110 QLRELPAQFT GHSVDGEGFE NTLDASSLDF KVPPDIEEPL LEPENEKILD 251 300 ENSP00000252542/1-953 ILGETCKSEP VKEESSELEQ PFAQDTSSVG PDRKLAEEED LFDSAHPEEG ENSTTRP00000012893/1-947 ILGETCKSEP VKEEGSELEQ PFAQETSSVG PDRKLAEEED LFDSAHPEEG ENSBTAP00000042180/1-954 ILGETCKSEP VKEEGSELEQ PFAQETSSVG PDRKLAEEED LFDSAHPEEG bmy_06940T0/1-852 ILGETCKSEP VKEEGSELEQ PFAQETSSVG PDRKLAEEED LFDSAHPEEG BACU002589/1-1110 ILGETCKSEP VKEEGSELEQ PFAQETSSVG PDRKLAEEED LFDSAHPEEG 301 350 ENSP00000252542/1-953 DLDLASESTA HAQSSKADSL LAVVKREPAE QPGDGERTDC EPVGLEPAVE ENSTTRP00000012893/1-947 DLDLASESTA QAQSSKADTL LAVVKREPVE QTGDGERTDC EPVGLEKPVE ENSBTAP00000042180/1-954 DLDLANESTA HAQSSKADTL LAVVKREPVE QTGDDERTDC EPVGLEKPIE bmy_06940T0/1-852 DLDLASESTA QAQSSKADTL LAVVKREPVE QTGDGERTDC EPVGLEKPVE BACU002589/1-1110 DLDLASESTA QAQSSKADTL LAVVKREPVE QTGDGERTDC EPVGLEKPVE 351 400 ENSP00000252542/1-953 QSSAASELAE ASSEELAEAP TEAPSPEARD SKEDGRKFDF DACNEVPPAP ENSTTRP00000012893/1-947 QSSKASEHTE ACSEEASEAP PEASSPDPRD SKEDVKKFAF EACNEVPPAP ENSBTAP00000042180/1-954 QSSKASEHTE ACSEEAAEAP PEASSPDPGD SKEDVKKFAF EACNEVPPAP bmy_06940T0/1-852 QSSKASEHTE ACSEEASEAP PEASSPDPRD SKEDVKKFAF EACNEVPPAP BACU002589/1-1110 QSSKASEHTE ACSEEASEAP PEASSPDPRD SKEDVKKFAF EACNEVPPAP 401 450 ENSP00000252542/1-953 KESSTSEGAD QKM----SSF KEEKDIKPII KDEKGRVGSG SGRNLWVSGL ENSTTRP00000012893/1-947 KESSASEGAD QKM----SSF KEEKDIKPII KDEKGRISSS SGRNLWVSGL ENSBTAP00000042180/1-954 KESSASEGAD QKM----SSF KEEKDIKPIV KDEKGRISNS SGRNLWVSGL bmy_06940T0/1-852 KESSASEGAD QKMRLIFCSF KEEKDIKPII KDEKGRISSS SGRNLWVSGL BACU002589/1-1110 KESSASEGAD QKM----SSF KEEKDIKPII KDEKGRISSS SGRNLWVSGL 451 500 ENSP00000252542/1-953 SSTTRATDLK NLFSKYGKVV GAKVVTNARS PGARCYGFVT MSTSDEATKC ENSTTRP00000012893/1-947 SSTTRATDLK NLFSKYGKVV GAKVVTNARS PGARCYGFVT MSTSDEATKC ENSBTAP00000042180/1-954 SSTTRATDLK NLFSKYGKVV GAKVVTNARS PGARCYGFVT MSTSDEATKC bmy_06940T0/1-852 SSTTRATDLK NLFSKYGKVV GAKVVTNARS PGARCYGFVT MSTSDEATKC BACU002589/1-1110 SSTTRATDLK NLFSKYGKVV GAKVVTNARS PGARCYGFVT MSTSDEATKC 501 550 ENSP00000252542/1-953 ISHLHRTELH GRMISVEKAK NEPAGKKLSD RKECEVKKEK LSSVDRHHSV ENSTTRP00000012893/1-947 ISHLHRTELH GRMISVEKAK NEPAGKKLSD RKECEVKKEK LSNVDRHHSM ENSBTAP00000042180/1-954 ISHLHRTELH GRMISVEKAK NEPSGKKLSD RKECEVKKEK LSSVDRHHSV bmy_06940T0/1-852 ISHLHRTELH GRMISVEKAK NEPAGKKLSD RKECEVKKEK LSNVDRHHSV BACU002589/1-1110 ISHLHRTELH GRMISVEKAK NEPAGKKLSD RKECEVKKEK LSNVDRHHSV 551 600 ENSP00000252542/1-953 EIKIEKTVIK KEEKIEKKEE KKPEDIKKEE KDQDELKPGP TNRSRVTKSG ENSTTRP00000012893/1-947 EIKVEKTVIK KEEKMEKKEE RKPENIKKEE KDEDELKPGA ANRSRVTRSG ENSBTAP00000042180/1-954 EIKVEKTIVK KEEKMEKKEE KEPEDIKKEE KDENELKSGP ENRSRVTKSG bmy_06940T0/1-852 EIKVEKTVIK KEEKMEKKEE RKPENIKKEE KDEDELKPGA ANRSRVTRSG BACU002589/1-1110 EIKVEKTVIK KEEKMEKKEE RKPENIKKEE KDEDELKPGA ANRSRVTRSG 601 650 ENSP00000252542/1-953 SRGMERTVVM DKSKGEPVIS VKTTSRSKER SSKSQDRKSE SKEKRDILSF ENSTTRP00000012893/1-947 SRGMERTVVM DKSKGEPVIS VKTTSRSKER SSKSQDRKSE SKEKRDILSF ENSBTAP00000042180/1-954 SRGMERTVVM DKSKGEPVIS VKTTSRSKER SSKSQDRKSE SKEKRDILSF bmy_06940T0/1-852 SRGMERTVVM DKSKGEPVIS VKTTSRSKER SSKSQDRKSE SKEKRDILSF BACU002589/1-1110 SRGMERTVVM DKSKGEPVIS VKTTSRSKER SSKSQDRKSE SKEKRDILSF 651 700 ENSP00000252542/1-953 DKIKEQRERE RQRQREREIR ETERRREREQ REREQRLEAF HERKEKARLQ ENSTTRP00000012893/1-947 DKIKEQRERE RQRQREREIR ETERRREREQ REREQRLDAL HEGKEKARLQ ENSBTAP00000042180/1-954 DKIKEQRERE RQRQREREIR ETERRREREQ REREQRLEAF HEGKEKARLE bmy_06940T0/1-852 DKIKEQRERE RQRQREREIR ETERRREREQ REREQRLDAL HEGKEKARLQ BACU002589/1-1110 DKIKEQRERE RQRQREREIR ETERRREREQ REREQRLDAL HEGKEKARLQ 701 750 ENSP00000252542/1-953 RERLQLECQR QRLERERMER ERLERERMRV ERERRKEQER IHREREELRR ENSTTRP00000012893/1-947 RERLQLERQR QRLERERLER ERLERERERV ERERRKEQER IQREREELRH ENSBTAP00000042180/1-954 REREQLDRQW QRLERERLER ERLERERERV ERERRREQER IQREREELRH bmy_06940T0/1-852 RERLQLERQR QRLERERLER ERLERERERV ERERRKEQER IQREREELRH BACU002589/1-1110 RERLQLERQR QRLERERLER ERLERERERV ERERRKEQER IQREREELRH 751 800 ENSP00000252542/1-953 QQEQLRYEQE RRPG-RRPYD LD----RRDD AYWPEGKRVA MEDRYRADFP ENSTTRP00000012893/1-947 QQEQLRYEQE RRSVLRRPYD VG----RRDD AYWPGKRXXX XXXXXXXXXX ENSBTAP00000042180/1-954 QQEQLRYEQE RRSVVRRPYD IGRMKNRRDD AYWPEGKRMA MEDRYRPDFP bmy_06940T0/1-852 QQEQLRYEQE RRSVLRRPYD VG----RRDD AYWPEGKRMA MEDRYRPDFP BACU002589/1-1110 QQEQLRYEQE RRSVLRRPYD VG----RRDD AYWPEGKRMA MEDRYRPDFP 801 850 ENSP00000252542/1-953 RPDHRFHDFD HRDRGQYQDH AIDRREGSRP MMGDHRDGQH YGDDRHGHGG ENSTTRP00000012893/1-947 XXXXXXXXXX XXXXXXLEQD VG--REGSRS VMGE-RDGQX XXXXXXXXXX ENSBTAP00000042180/1-954 RPDHRFHHFD YRDRGRYQEH VADRREGSRS VMGE-RDGQH YSDERHSHGG bmy_06940T0/1-852 RPDHRFHDFD HRDRGQYQEH VADSTTQTTA TATE------ --DHQSAMAA BACU002589/1-1110 RPDHRFHDFD HRDRGQYQEH VADRREGSRS VMGE-RDGQH YSDDRHGHGG 851 900 ENSP00000252542/1-953 PPERHGRDSR DGWGGYGSDK RLSEGRGLPP PP--RGGRDW GEHNQRLEEH ENSTTRP00000012893/1-947 XXXXXXXXXR DGLGGYGSDK KMSEGRGLLP P---RGGRDW AEHSQRLEEH ENSBTAP00000042180/1-954 PPERHARDSR DGWGGYGSDK RMSEGRGPPP PPRQRGGRDW SEHSQRLEEH bmy_06940T0/1-852 TPETAGVAT- ---------- ---------A PT--RG---- ---------- BACU002589/1-1110 PPERHGRDSR DGWGGYGSDK RMSEGRGLPP PP--RGGRDW AEHSQRLEEH 901 950 ENSP00000252542/1-953 QARAWQGAMD AGAASREHAR WQGGERGLSG PSGPGHMASR GGVAGRGGFA ENSTTRP00000012893/1-947 QERAWPGTVD AGTAGREHLR WQGGERGLSG PSGPGHVASR GGISGRGGFA ENSBTAP00000042180/1-954 QERTWPGTVD TDTAGREHSR WQGGERGLSG PSGPGHMADR GGISGRGGFA bmy_06940T0/1-852 ---------- ---------- ---------- ---------- ---------- BACU002589/1-1110 QERAWPGTVD AGTAGREHLR WQG------- -MGSPLPAGR EGLAGRDSHS 951 1000 ENSP00000252542/1-953 QGGHSQGHVV PGGGLEGGGV ASQ------- ---------- ---------- ENSTTRP00000012893/1-947 HGGHAQAHVV PSGGLEGGGV AGQ------- ---------- ---------- ENSBTAP00000042180/1-954 HSGHTQGDVV PAGGLDSDGL AGQ------- ---------- ---------- bmy_06940T0/1-852 ---------- ---------- ---------- ---------- ---------- BACU002589/1-1110 PSLLQRASFS RASKHFQEGS VCTLXXXXXX XXXXXXXXXX XXXXXXXXXX 1001 1050 ENSP00000252542/1-953 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012893/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042180/1-954 ---------- ---------- ---------- ---------- ---------- bmy_06940T0/1-852 ---------- ---------- ---------- ---------- ---------- BACU002589/1-1110 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1051 1100 ENSP00000252542/1-953 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012893/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042180/1-954 ---------- ---------- ---------- ---------- ---------- bmy_06940T0/1-852 ---------- ---------- ---------- ---------- ---------- BACU002589/1-1110 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1101 1150 ENSP00000252542/1-953 ---------- ---------- ---------- ---------- ----DRGSRV ENSTTRP00000012893/1-947 ---------- ---------- ---------- ---------- ----DRGSRG ENSBTAP00000042180/1-954 ---------- ---------- ---------- ---------- ----DRGDRD bmy_06940T0/1-852 ---------- ---------- ---------- ---------- ---------- BACU002589/1-1110 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA 1151 1200 ENSP00000252542/1-953 PH-PHPHPPP YPHFTRRY ENSTTRP00000012893/1-947 PHRPH----P YPHFTRRY ENSBTAP00000042180/1-954 PH-PH----Q YPHFTRSY bmy_06940T0/1-852 ---------- -------- BACU002589/1-1110 PH-------P YPHFTRRY