KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:13 2014 Check: 00 .. Name: bmy_12239T0/1-494 Len: 772 Check: 704 Weight: 1.00 Name: ENSTTRP00000002799/1-484 Len: 772 Check: 3444 Weight: 1.00 Name: BACU009114/1-484 Len: 772 Check: 6970 Weight: 1.00 Name: ENSP00000320234/1-559 Len: 772 Check: 8784 Weight: 1.00 Name: ENSBTAP00000042192/1-481 Len: 772 Check: 8439 Weight: 1.00 // 1 50 bmy_12239T0/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002799/1-484 ---------- ---------- ---------- ---------- -------LWP BACU009114/1-484 ---------- ---------- ---------- ---------- ---------- ENSP00000320234/1-559 MAGPTE--AE TGLAEPRALC AQRGHRTYAR RWVFLLAISL LNCSNATLWL ENSBTAP00000042192/1-481 MAGPAGDWPE AGAATS-VRS ALGGYRAYAR RWVFLLVISL LSCSNATLWL 51 100 bmy_12239T0/1-494 -------MVG GGWGAAGGSL GW----WAAL LTP------- -------ALQ ENSTTRP00000002799/1-484 SFAPVADTVS QHFLLSTEQI SWLSL-YLVV SIPFGVVAIW VLDSAGLRWV BACU009114/1-484 ---------- ---------- ---------- ---------- ---------- ENSP00000320234/1-559 SFAPVADVIA EDLVLSMEQI NWLSLVYLVV STPFGVAAIW ILDSVGLRAA ENSBTAP00000042192/1-481 SFAPVADTIA RHFLLSTEQI NWLSLVYLVV SIPFGMVAIW VLDSVGLRRA 101 150 bmy_12239T0/1-494 TILCAWLNFV GSVIRSQPCM ITSSQDPFAF LMGGQSLCAL AQTLVI-SPA ENSTTRP00000002799/1-484 TVLCARLNFA GRGIRSQPCM ITSRQNPFAL LTGGQSLCAL AQTLVI-SPA BACU009114/1-484 ---------- ---------M ITSSQDAFAF LMGGQSLCAL AQTLVI-SPA ENSP00000320234/1-559 TILGAWLNFA GSVLRMVPCM VVGTQNPFAF LMGGQSLCAL AQSLVIFSPA ENSBTAP00000042192/1-481 TTLGAFLNFW GSMIRSMPCM AVDIQDPFVF LLGGQTFCAL AQRVAG-RFC 151 200 bmy_12239T0/1-494 KLPAL----- -------WFP ERQRATANTI GTVCESRGWA STSSL----- ENSTTRP00000002799/1-484 KWAA------ -------WFP EHQRATANMI GTVSNPLGIL VASPLSPTLV BACU009114/1-484 KLAAL----- -------WFP ERQRAPANTI GTVSNPLGIL VANLLSPTLV ENSP00000320234/1-559 KLAAL----- -------WFP EHQRATANML ATMSNPLGVL VANVLSPVLV ENSBTAP00000042192/1-481 ALPALGAEGS SVDGGPAYLP ELTHIPVH-- --LANALGIL VANLLSPALV 201 250 bmy_12239T0/1-494 ---------- ---------- ---LAAACVW ESTPPAPPSA GAVHSTSQKF ENSTTRP00000002799/1-484 KKEEDIPLMX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009114/1-484 KKEEDIPLMV ---------- ---------- RELRSARMER GLRHPGR--- ENSP00000320234/1-559 KKGEDIPLML GVYTIPAGVV CL-LSTICLW ESVPPTPPSA GAASSTSEKF ENSBTAP00000042192/1-481 KTEEDIPLML GTYILPAGLT FL-LAIACLW ESVPPTPPSV GLPSPPRCR- 251 300 bmy_12239T0/1-494 LAGLELVSAV CAGGGQEGKG AGLPRGASGC AAGAPGLSSP SPLARKERGL ENSTTRP00000002799/1-484 XXXXXXXXXX XX-------- ---XXXXXXX XXXXXXXXXX XXXXXXX--- BACU009114/1-484 ---------- ---------- ---------V LGGSIGTFSS FSSLLEQ--- ENSP00000320234/1-559 LDGLKLLMWN KA-------- ---YVILAVC LGGMIGISAS FSALLEQ--- ENSBTAP00000042192/1-481 ------LTRN KA-------- ---YMVLAVC FGGGIGIFSN FSALLEQ--- 301 350 bmy_12239T0/1-494 HHPGRVLCGQ HWHLLQLLVP PGADPLCERL LQHGPDERVP PPPLLLQEFA ENSTTRP00000002799/1-484 -----XXXXX XXX------- ---------- ---------- ------XEFA BACU009114/1-484 -----ILCVN GYA------- ---------- ---------- ------SEFA ENSP00000320234/1-559 -----ILCAS GHS------- ---------- ---------- ------SGFS ENSBTAP00000042192/1-481 -----VLCVN GYS------- ---------- ---------- ------SEFA 351 400 bmy_12239T0/1-494 GLCGALFIAF GVLGALALGL YVDRTKHFTG AVKIGLCLTS LVCVAFALVS ENSTTRP00000002799/1-484 GLCGALFNAF GV-GARPLGP YVDRIKHFTG AVRIGLCRTS LVCMAFALGS BACU009114/1-484 GLCGALFIAF GVLGALALGL YVDRTKHFTG AVKIGLCLTP LVCEAFAL-- ENSP00000320234/1-559 GLCGALFITF GILGALALGP YVDRTKHFTE ATKIGLCLFS LACVPFALVS ENSBTAP00000042192/1-481 GLCGALFIVF GVLGAVALGL YVDRTKHFTE AIKIGLCLTS LACVAFAVVS 401 450 bmy_12239T0/1-494 QLRGQTIALA AICSLLGLFA SQRRLSPWSW LSSGPSLWAR LRARAWSSCW ENSTTRP00000002799/1-484 Q-------LA ATCSPLGLF- ---------- FSAVPV--AV QLAVEHSFLV BACU009114/1-484 ---------- ---------- ---------- FAAAPV--AV ELAVEWSFPV ENSP00000320234/1-559 QLQGQTLALA ATCSLLGLFG ---------- FSVGPV--AM ELAVECSFPV ENSBTAP00000042192/1-481 QLQGQTIVLA AICSLLGFFG ---------- FSVAPV--AM ELAVECSFPV 451 500 bmy_12239T0/1-494 GRGCAHHGAA DLPDRAPRGA VLLHLPGRPG PARLEGGVRG PLHPGGHSST ENSTTRP00000002799/1-484 GEGA-TGLVL VLGQ--PEGV LSMALLASLT VRRVELSFST CRD-GQDPL- BACU009114/1-484 GEAAGAGLVL VLGQ--AEGV LTMALLTSLT VRRVEPSFST CRD-GQDPLD ENSP00000320234/1-559 GEGAATGMIF VLGQ--AEGI LIMLAMTALT VRRSEPSLST CQQ-GEDPLD ENSBTAP00000042192/1-481 GEGAAAGLVF VLGQ--AEGV LIMVLLTSLT VRHAEPSVST CQD-GQGPLD 501 550 bmy_12239T0/1-494 WGASAELGHV SPVSTLLMAG LCVLFSCLVV LFLHTPYRRL QAEADASPSI ENSTTRP00000002799/1-484 ---------- -AESTLLVVG LCVLFSCFGV LFLHTPYRCL QAEADE-PSV BACU009114/1-484 W--------- -KVSTLLMAG LCVLFSCLAV LFLHTPHRRL QAEADASPSI ENSP00000320234/1-559 W--------- -TVSLLLMAG LCTFFSCILA VFFHTPYRRL QAESGEPPST ENSBTAP00000042192/1-481 W--------- -KVPMLLMAG LCVLFSCLFV LLFHTPYRRL QAEADASPSI 551 600 bmy_12239T0/1-494 QE-------- ---------- ---------- ---------- ---------- ENSTTRP00000002799/1-484 QE-------- ---------- ---------- ---------- ---------- BACU009114/1-484 QEDVSPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320234/1-559 RNAVG----- ---------- ---------- ---------- ---------- ENSBTAP00000042192/1-481 QE-------- ---------- ---------- ---------- ---------- 601 650 bmy_12239T0/1-494 ---------- ---------- ---------- ---------- ---------D ENSTTRP00000002799/1-484 ---------- ---------- ---------- ---------- ---------E BACU009114/1-484 XXXXXXXXXX XXXXXXXXXX XXXPSWGRGS WLCLPPPGSP PRRHGAPAED ENSP00000320234/1-559 ---------- ---------- ---------- ---------- -------GAD ENSBTAP00000042192/1-481 ---------- ---------- ---------- ---------- ---------D 651 700 bmy_12239T0/1-494 VHSATSAA-- ----TPRGPA AAPRP----- ---------- ---------- ENSTTRP00000002799/1-484 VRPASPSPAL AQV-GRAGGA RLGRR----- ---------- ---------- BACU009114/1-484 QRPGSSWCDE KRAWGHEGAA RRGRPWSPRL HQSHLRPGRC QHPGGPGSWN ENSP00000320234/1-559 SGPGVDRGGA GRA-GVLGPS TATPECTAR- ---------- ---------- ENSBTAP00000042192/1-481 ERPAT----- --A-AALG-- ---------- ---------- ---------- 701 750 bmy_12239T0/1-494 ---------- ---------- -QQPAPPGAG APGSASLP-- ---------R ENSTTRP00000002799/1-484 ---------- --GGPHAAHP LKTPPTDTPT PRGATSPPER LAGRCGFAFI BACU009114/1-484 TGGLAQGTPC GCSKESCCCV DKRP-PTGRG ASAARPDPGW LGQG-----L ENSP00000320234/1-559 --GASLEDPR GPGSPHPACH RATPRAQGPA ATDAPSRPGR LAGR-----V ENSBTAP00000042192/1-481 ---------- -----HAPYL AATP------ ---------- ---------- 751 800 bmy_12239T0/1-494 ESSETSWGPC RGPEAREQLV -- ENSTTRP00000002799/1-484 ELAAAQWGRG -GPHSASPWV ST BACU009114/1-484 RVGRLAWPRG TG-------- -- ENSP00000320234/1-559 QASRFIDPAG SHSSFSSPWV IT ENSBTAP00000042192/1-481 ---------- ---------- --