KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:14 2014 Check: 00 .. Name: bmy_00727T0/1-438 Len: 580 Check: 3803 Weight: 1.00 Name: ENSTTRP00000014728/1-546 Len: 580 Check: 3423 Weight: 1.00 Name: BACU011954/1-575 Len: 580 Check: 2206 Weight: 1.00 Name: ENSP00000280606/1-553 Len: 580 Check: 8299 Weight: 1.00 Name: ENSBTAP00000042196/1-553 Len: 580 Check: 2657 Weight: 1.00 // 1 50 bmy_00727T0/1-438 -AGQVRLPAP RLTCVSLFPG LQAAQRACGQ RGPGPSTPQE GSTVPGEWPW ENSTTRP00000014728/1-546 MKGSWGPRLL ILGAVVLIEG LQAAQHACGQ RGPGPSTPQE GNTVPGEWPW BACU011954/1-575 MKGSWGPRLL ILGAVVFIEG LQAAQRACGQ RGPGPSTPQE GSTVPGEWPW ENSP00000280606/1-553 MKWCWGPVLL IAGATVLMEG LQAAQRACGQ RGPGPPKPQE GNTVPGEWPW ENSBTAP00000042196/1-553 MKQSWRLKLF ILGAVVLTEG LQAAQRACGQ RGPGPPEPQE GNTMPGEWPW 51 100 bmy_00727T0/1-438 QASVRKEGVH ICSGSLVADS WVLTAAHCFE KA-------- ---------- ENSTTRP00000014728/1-546 QASVRRQGAH ICSGSLVADS WVLTAAHCLE KATVTELHSW SVVLGSLKHE BACU011954/1-575 QASVRRQGAH ICGGSLVADS WVLTAAHCFE KAAVTELHSW SVVLGSLKHE ENSP00000280606/1-553 QASVRRQGAH ICSGSLVADT WVLTAAHCFE KAAATELNSW SVVLGSLQRE ENSBTAP00000042196/1-553 QASVRRQGIH ICSGSLVADI WVLTAAHCFE KEAMTELNSW SVVLGSLQHE 101 150 bmy_00727T0/1-438 ---------- ---------- -----GAQVS VL-------- ---------- ENSTTRP00000014728/1-546 GLSPGAEEVG VTAVQLPRDY KHYSQGSDLA LLRLAHPVAH TPLCLPQPAH BACU011954/1-575 GLSPGAEEVG VTALQLPGAY KHYSQGSDLA LLRLAHPVAH TPLCLPQPAH ENSP00000280606/1-553 GLSPGAEEVG VAALQLPRAY NHYSQGSDLA LLQLAHPTTH TPLCLPQPAH ENSBTAP00000042196/1-553 GLSPGAEEVG VTALQLPRAY NHYSQGSDLA LLRLAHPIAH TPLCLPRPAH 151 200 bmy_00727T0/1-438 ---------- -----D-NT- ---------- ---------- -SRL------ ENSTTRP00000014728/1-546 RFPFGTYCWA TGWDQD-NDV PRALRNIHLR LISRPTCNCL YNRLHQRLLA BACU011954/1-575 RFPFGTHCWA TGWDQD-NDV PRALRNIRLR LISRPTCNCL YDRLHQRLLA ENSP00000280606/1-553 RFPFGASCWA TGWDQDTSDA PGTLRNLRLR LISRPTCNCI YNQLHQRHLS ENSBTAP00000042196/1-553 RFPFGTSCWA TGWYQHTNDA PRTLRNLRLR LISRPTCNCL YNRLHQRSLA 201 250 bmy_00727T0/1-438 ---------- ---------- QGDSGGPVLC REPDGHWVQA GIISFATDCA ENSTTRP00000014728/1-546 SPARPEMLCG GPQPGVQGPC QGDSGGPVLC REPDGHWVQA GIISFATDCA BACU011954/1-575 SPARPGMLCG GPQPGVQGPC QGDSGGPVLC REPDGHWVQA GIISFATGCA ENSP00000280606/1-553 NPARPGMLCG GPQPGVQGPC QGDSGGPVLC LEPDGHWVQA GIISFASSCA ENSBTAP00000042196/1-553 SPARPGMLCG GPQPGMQGPC QGDSGGPVLC REPDGHWVQA GIISFASSCA 251 300 bmy_00727T0/1-438 QEHTPVLLTA VTAHSSWLQA QAQAAAFLAQ DAETPEISDE DSCV------ ENSTTRP00000014728/1-546 QEDTPVLLTD VTAHSSWLQA QAQGAAFVAQ DAETPEISDE DSCVACGSLR BACU011954/1-575 QEDTPVLLTD VTAHSSWLQA QARGSAFLAQ DPETPEISDE DSCVACGSLR ENSP00000280606/1-553 QEDAPVLLTN TAAHSSWLQA RVQGAAFLAQ SPETPEMSDE DSCVACGSLR ENSBTAP00000042196/1-553 REDTPVLLTD MAAHSSWLQA RAQGAAFLTQ NPETPEISDE DSCVACGSLR 301 350 bmy_00727T0/1-438 ------EAPS PRPWDARLKH QGKLACGGAL VSEEVVLTAA HCFTGRQTPE ENSTTRP00000014728/1-546 RDGPQAEAPS PQPWDAMLKH RGKLACGGAL VSEEVVLTAA HCFIGRQTPE BACU011954/1-575 REGPQAEAPS PRPWDARLKH QGKLACGGAL VSEEVVLTAA HCFTGRQTPE ENSP00000280606/1-553 TAGPQAGAPS PWPWEARLMH QGQLACGGAL VSEEAVLTAA HCFIGRQAPE ENSBTAP00000042196/1-553 REGPQAGAPS PWPWDARLKH QGKLACGGAL VSEEVVLTAA HCFIGRQTPE 351 400 bmy_00727T0/1-438 EWTVGLGAGT EERGLKKVIL HGMYTHPEGG YDVALLLLAQ PVTLGSSLRP ENSTTRP00000014728/1-546 EWTVGLGAGP EERGLKKVTL HGMYSHPEGG YDVALLLLAQ PVTLGSSLRP BACU011954/1-575 EWTVGLGAGP EERGLKKVIL HGMYTHPEGG YDVALLLLAQ PVTLGSSLRP ENSP00000280606/1-553 EWSVGLGTRP EEWGLKQLIL HGAYTHPEGG YDMALLLLAQ PVTLGASLRP ENSBTAP00000042196/1-553 EWTVGLGVGP EESGLKQVIL HGAYTHPEGG YDVALLLLAQ PVTLGPSLRP 401 450 bmy_00727T0/1-438 LCLPYADHRL PDGEHGWVLV LARQGAGTSS PQTVPVTLLG PRACSRLYAA ENSTTRP00000014728/1-546 LCLPYVDHHL PDGEHGWVLG LAHQGAGTSS PQTVPVTLLG SKACSRLHTA BACU011954/1-575 LCLPYADHRL PDGEHGWVLG LARQGAGTSS PQTVPVTLLG PRACSRLYAA ENSP00000280606/1-553 LCLPYPDHHL PDGERGWVLG RARPGAGISS LQTVPVTLLG PRACSRLHAA ENSBTAP00000042196/1-553 LCLPYSDHRL PDGERGWVLG LARQGADTGS PQTVPVTLLG PRACSRLHAA 451 500 bmy_00727T0/1-438 LGSDRTPILP QMVCTSAVGE PPGCEGLSGT PLVHEVRGTW FLAGLHSFGD ENSTTRP00000014728/1-546 LGSDRTPILP RTMCTSAVGE PPSCEGLSGA PLVQEVRGTW FLAGLHSFGD BACU011954/1-575 LGSDRTPILP QMVCTSAVGE PPGCEGLSGT PLVHEVRGTW FLAGLHSFGD ENSP00000280606/1-553 PGGDGSPILP GMVCTSAVGE LPSCEGLSGA PLVHEVRGTW FLAGLHSFGD ENSBTAP00000042196/1-553 LGS----ILP GMVCTSVVGE PPSCEGLSGA PLVHEVRGTW FLAGLHSFGD 501 550 bmy_00727T0/1-438 ACEGPARPAV FTVLPTYENW VSSLEWQVYF AEEPE----P EAEPESCPAN ENSTTRP00000014728/1-546 ACEGPARPAI FTMLPSYENW VSSLEWRVYF AEEPG----P EAEPESCPAN BACU011954/1-575 ACEGPARPAI FTVLPTYENW VSSLEWRVYF AEEPG----P EAEPESCPAN ENSP00000280606/1-553 ACQGPARPAV FTALPAYEDW VSSLDWQVYF AEEPE----P EAEPGSCLAN ENSBTAP00000042196/1-553 ACQGPARPAV FAALPTYENW VSSLDWQVYF AEEPEPEPEP EPEPGSCTAN 551 600 bmy_00727T0/1-438 KSTWPWGLVP TLPPQTPSLS TWGRAGQGLA ENSTTRP00000014728/1-546 K--------- ---------- ---------- BACU011954/1-575 KSTWPWGLVP TLPPQTPSLS TWGRAGQGLA ENSP00000280606/1-553 ISQPTSC--- ---------- ---------- ENSBTAP00000042196/1-553 MSQPANC--- ---------- ----------