KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:17 2014 Check: 00 .. Name: ENSP00000350447/1-1265 Len: 1370 Check: 6535 Weight: 1.00 Name: ENSBTAP00000042237/1-1243 Len: 1370 Check: 2262 Weight: 1.00 Name: ENSTTRP00000005913/1-1030 Len: 1370 Check: 8415 Weight: 1.00 Name: bmy_21067T0/1-1339 Len: 1370 Check: 6751 Weight: 1.00 Name: BACU013919/1-827 Len: 1370 Check: 702 Weight: 1.00 // 1 50 ENSP00000350447/1-1265 MECPVMETGS LFTSGIKRHL KDKRISKTTK LNVSLASKIK TKILNNSSIF ENSBTAP00000042237/1-1243 MEYPAMETSS LFTSGIKKHV KDRRISKTTK LNVSLASKIK TKIINNSSIF ENSTTRP00000005913/1-1030 MEYPVMETGS LFTSGIKRHV KEKRISKAAK LNVSLASKIK TKILNNSSIF bmy_21067T0/1-1339 MEYPVMETGS LFTSGIKRHV KEKRISKAAK LNVSLASKIK TKIINNSSIF BACU013919/1-827 MEYPVMETGS LFTSGIKRHV KEKRISKAAK LNVSLASKIK TKIIN----- 51 100 ENSP00000350447/1-1265 KISLKHNNRA LAQALSREKE NSRRITTEKM LLQKEVEKLN FENTFLRLKL ENSBTAP00000042237/1-1243 KISLKHNNRA LALALSRERE NSRRITTEKM LLQKEVDKLN FENTFLRLKL ENSTTRP00000005913/1-1030 KISLKHNNRA LAQALSREKE NSRRITTEKM LLQKEVEKLN FENTFLRLKL bmy_21067T0/1-1339 KISLKHNNRA LAQALSREKE NSRRITTEKM LLQKEVEKLN FENTLLRLKL BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000350447/1-1265 NNLNKKLIDI EALMNNNLIT AIEMSSLSEF HQSSFLLSAS KKKRISKQCK ENSBTAP00000042237/1-1243 NNLNKKLIEI EALMNNNLIT AIEMSALSEI IEISYIASSS KFQKIFILCL ENSTTRP00000005913/1-1030 NNLNKKLIEI EALMNNSLIT AIEMSTLSEF HESPFLLPSS KKKRVSKQCK bmy_21067T0/1-1339 NNLNKKLIEI EALMNNNLIT AIEMSTLSEF HQSPFLLPSS KKKRVSKQCK BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000350447/1-1265 LMRLPFARVP LTSNDDEDED KEKMQCDNNI KSKTLPDIPS SGSTTQPLST ENSBTAP00000042237/1-1243 FLLTCFFKVP LTSNDDDDED KEKIQCDDIT ISKTSPDSPS L-VSARPVST ENSTTRP00000005913/1-1030 LMRLPFARVP LTSNDDDDED KEKKQCDN-I MSKTSPDSPS L------VST bmy_21067T0/1-1339 LMRLPFARVP LTSNDDDDED KEKMQCDN-I MSKTSPDSPS L------VST BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000350447/1-1265 QDNSEVLFLK ENNQNVYGLD DSEHISSIVD VPPRESHSHS DQSSKTSLMS ENSBTAP00000042237/1-1243 QNNLRLLFVK ENDQNVCSVN DSEHVSSIVD TLPKGNHSHS DQSSRSSLTS ENSTTRP00000005913/1-1030 QHNLELLFLK ENDQNVCGVN DSKHISSIVD ILPKESHSHS DQSSRSSLMS bmy_21067T0/1-1339 QHNLELLFLK ENDQNVCGVN DSKHISSIVD ILPKESHSHS DQSSRSSLMS BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000350447/1-1265 EMRNAQSIGR RWEKPSPSNV TERKKRGSSW ESNNLSADTP CATVLDKQHI ENSBTAP00000042237/1-1243 EKKNAQAISH KKEKSSPSNV TKRKKRVSSW ESDN-PADTP CVTDLDQQQV ENSTTRP00000005913/1-1030 EMKNAQSMSH RK-KSSPSNV TKRKKRVSSW ESNN-PADTP CVTDLDQQQI bmy_21067T0/1-1339 EMKNAQSMSH RK-KSSPSNV TKRKKRVSSW ESNN-PADTP CVTDLDQQQI BACU013919/1-827 ---------- ---------- ---------- ---------- ----LDQQQI 301 350 ENSP00000350447/1-1265 SSPELNCNNE INGHTNETNT EMQRNKQDLP GLSSESAREP NAECMNQIED ENSBTAP00000042237/1-1243 SSPILNWNNE IKDYTNETNT -MQRNILCLP A-SSESASEP PTKGMNPLQG ENSTTRP00000005913/1-1030 SSPILNWNNE IKDCTNEANI KMQRNIMCLP A-SSESASEP TAEGLNPVQG bmy_21067T0/1-1339 SSPILNWNNE IKDCTNEANI KMQRNIMCLP A-SSESASEP TAEGMNPVQG BACU013919/1-827 SSPILNWNNE IKDCTNEANI KMQRNIMCLP A-SSESASEP TAEGMNPVQV 351 400 ENSP00000350447/1-1265 NDDFQLQKTV YDADMDLTAS EVSKIVTVST GIKKKS-NKK TNEHGMKTFR ENSBTAP00000042237/1-1243 ND-FQLQKTV YDDDMDLTAS EVSKIITVST GTKKKR-KKN SDDCGMKTFR ENSTTRP00000005913/1-1030 NDDFQLQKTV YDGDMDLTAS EVSKIVTVST GIKNKRDNKK PNDCGIKTFR bmy_21067T0/1-1339 NDDFQFQKTV YDDDMDLTAS EVSKIVTVST GTKNKRDNKK PNDCGMTTFR BACU013919/1-827 NDDFQLQKTV YDDDMDLTAS EVSKIVTVST GTENKRDNKK PNDCGMTTFR 401 450 ENSP00000350447/1-1265 KVKDSSSEKK RERSKRQFKN SSDVDIGEKI ENRTE-RSDV LDGKRGAEDP ENSBTAP00000042237/1-1243 KVKDPSSEKK RERSKRQFKN CSGANIEEKI ESGPEDRSVD LDGEGDSRDP ENSTTRP00000005913/1-1030 KVKDPSSEKK RERSKRQFKN SSDVNIEDKI KNGLERRSVV LDGKEDSEEP bmy_21067T0/1-1339 KVKDPSSEKK RERSKRQFKN SSDVNIEEKI KNGLERRSVV LDGKGDSEEP BACU013919/1-827 KVKDPSSEKK RERSKRQFKN SSDVNIEEKI KNGPERRSVV LDGKGDSEEP 451 500 ENSP00000350447/1-1265 GFIFNNEQLA QMNEQLAQVN ELKKMTLQTG FEQGDRENVL CNKKEKRI-- ENSBTAP00000042237/1-1243 NFIFSTEQLT QL-------N TWKKITLPNG FDQGDKQSMQ CNQKKKRIHV ENSTTRP00000005913/1-1030 NFIFSTEQLT QL-------N MPKKITLHNG FDQDDRPSTQ YNKKRKIIHV bmy_21067T0/1-1339 NFIFSTEQLT QL-------N MLKKITLHNG FDQDDRQSTQ YNKKKKRIHV BACU013919/1-827 NFIFSTEQLT QL-------N MLKKITLHNG FDQDDRQSTQ YNKKKKRIHV 501 550 ENSP00000350447/1-1265 TNEQEETYSL SQSSGKFHQE SKFDKGQNSL TCNKSKASRQ TFVIHKLEKD ENSBTAP00000042237/1-1243 TDEQEETYSF SQSSDKFPQD SKFDLCPSSL TCKKSKASRQ TFVIHTLEKD ENSTTRP00000005913/1-1030 TDDQEEIYSF SQNSDKVEQD SKFDMGPSSL AYKKSKTSRQ TFVIHTLEKD bmy_21067T0/1-1339 TDDQEEAYSF SQSSDKFQQD GKFDMGPSSL AYKKSKTSRQ TFVIHTLEKD BACU013919/1-827 TDDQEETYSF SQSSDKFQQD SKFDMGPSSL AYKKSKTSRQ TFVIHTLEKD 551 600 ENSP00000350447/1-1265 NLLPNQKDKV TIYENLDVTN EFHTANLSTK DNGNLCDYGT HNILDLKKYV ENSBTAP00000042237/1-1243 NLFPNQKVQE TTSENLGVTN EFQTAYLSNK GNPKLCDDET QNMFDLKKHV ENSTTRP00000005913/1-1030 NLFPNQHVT- STSENLGVTS EF-TVYLSS- DNGKLCDYET -NMLDL-KHV bmy_21067T0/1-1339 NLFPNQKVKE TTSENLGVTS EFQTAYLSNK DNGKLCDYET QNMLDLKKHV BACU013919/1-827 NLFPHQKVKE TTSENLGVTS EFQTAYLSNK DNGKLCDYET QNMLDLKKHV 601 650 ENSP00000350447/1-1265 TDIQPSEQNE SNINK-LRKK VNRKTEIISG MNHMYEDNDK DVVHGLKKGN ENSBTAP00000042237/1-1243 TDTQPTQQNE SKINKDW-QK INRKTEIISK MNQILGDNTK D-VQGPEKGN ENSTTRP00000005913/1-1030 TDRHLS---A NKINRS--QK INQTE--ITE MNLILGDNAK D-VQGPEKGN bmy_21067T0/1-1339 TDTQPTQQNE PKINKKLRQK INRKTEIISE MNQILGDNAK D-VQGPGKGN BACU013919/1-827 TDMQPTQQNE SKINKKLRQK INRKTEIISE MNQILGDNAK D-VQGPGKGN 651 700 ENSP00000350447/1-1265 FFFKTQEDKE PISENIEVSK ELQIPALSTR DNENQCDYRT QNVLGLQKQI ENSBTAP00000042237/1-1243 FSFQTQEDKE TISRNLDVSN EFQKSVLSTV NNGNLCDCET QNVLGLQKQI ENSTTRP00000005913/1-1030 FSFQTQEDKE IISGNLEVSN DFQKSGVSTS NNGNLCDCET QNVLGLQKQI bmy_21067T0/1-1339 FSFQTREDKE IISGNLEVSN DFQKSGLSTS NNGNLCDCET QNVLGLQKQI BACU013919/1-827 FCFQTREDKE IISGNLEVSN DFQKSGISTS NNGNLCDCET QNVLGLQKQI 701 750 ENSP00000350447/1-1265 TNMYPVQQNE SKVNKKLRQK VNRKTEIISE VNHLDNDKSI EYTVKSHSLF ENSBTAP00000042237/1-1243 TYAYPVQQNE SRINKTLKQK VNRKTEIIST VNHLDNT-S- EYCPEKG--- ENSTTRP00000005913/1-1030 TDVYPVQQNE SKINKNLRQK VNRKTEIISE VNLLDNNRS- GYCPEKGNSF bmy_21067T0/1-1339 TDVYPVQQNE SKINKNLRQK VNRKTEIISE VNLLANNKS- GYCPEKGNSF BACU013919/1-827 TDVYPVQQNE SKINKNLRQK VNRKTEIISE VNLLANNKS- GYCPEKGNSF 751 800 ENSP00000350447/1-1265 LTQKDKEIIP GNLEDPSEFE TPALSTKDSG NLYDSEIQNV LGVK-HGHDM ENSBTAP00000042237/1-1243 -----KEIIP ENPLDTHEFQ TPTLSSKDSR DLYDYDTQNV LGLKMNVHDI ENSTTRP00000005913/1-1030 FLTQDKEVIS VNLEGTNAFQ TSALASKDSR NLYDYDTQNV LGMKKHVYDI bmy_21067T0/1-1339 FLTQDKEIIS ENLEGTXEFQ TPALASKDSR NLYDYDTQNV LGVKKHVYDI BACU013919/1-827 FLTQDKEIIS ENLEGTSEFQ TPPLASKDSR NLYDYDTQNV LGVKKHVYDI 801 850 ENSP00000350447/1-1265 QPACQNDSKI GKKPRLNVCQ KSEIIPETNQ IYENDNKGVH DLEKDNF-FS ENSBTAP00000042237/1-1243 QPACQNESKI D-KLRQKVCR KTKIISEVNQ IYMSDDKGRH DPEKEKGDFS ENSTTRP00000005913/1-1030 QPACQNESKI DKKLRQKVCR KTEIISDTNQ IYKNHDKGMH DPEKGNL-FS bmy_21067T0/1-1339 QPACQNESKI DKKLRQKVCR KTEIISEINQ IYKNDDKGMH DPEKGNL-FS BACU013919/1-827 QPACQNESKL DKKLRQKVCQ KTEIISEINQ IYKNDDKGMH DPEKGNL-LS 851 900 ENSP00000350447/1-1265 LTPKDKETIS ENLQVTNEFQ TVDLLIKDNG NLCDYDTQN- ---------- ENSBTAP00000042237/1-1243 LTPNNEETIA ENLKVTHEFQ TIYLSTKDDG HLYDYKTQN- ---------- ENSTTRP00000005913/1-1030 LTQKDKEIIP ENLEDANEFQ IADPSLRGNR NPCDYETQN- ---------- bmy_21067T0/1-1339 LTQKDKEIIP ENLEDANEFQ IADPSLRGNR NPCDYETQNL LGVKKHATDT BACU013919/1-827 LTQKDKEIIP ENLEDANEFQ IADPSLRGNR NPCDYETQNL LGVKKHATDT 901 950 ENSP00000350447/1-1265 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042237/1-1243 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005913/1-1030 ---------- ---------- ---------- ---------- ---------- bmy_21067T0/1-1339 GKQNESKINK SLRQKVSRKT EIILEMNQKN ELNNKGVHDT VKGAFFSLTP BACU013919/1-827 GKQNESKINK SLRQKVSRKT EIILEMNQKN ELNDKGVHET VKGAFFSLTP 951 1000 ENSP00000350447/1-1265 ---------- ---------- ---------- ---ILELKKY VTDRKSAEQN ENSBTAP00000042237/1-1243 ---------- ---------- ---------- ---MLDLTKH VTDKQPTRQN ENSTTRP00000005913/1-1030 ---------- ---------- ---------- ---LLGVKKH ATD--TGKQN bmy_21067T0/1-1339 KDKETISENL EVTNEFQTIY LPTKNNGNLY TQNMLDLKKH VTDKQPAQQN BACU013919/1-827 KDKETISENL EVTNEFQTIY LPTKNNGNLY TQSMLDLKKH VTDKQPAQQN 1001 1050 ENSP00000350447/1-1265 ESKINK-L-- RNKVNWKTEI ISEMNQIYED NDKDAHVQES YTKDLDFKVN ENSBTAP00000042237/1-1243 ESKINKNLKQ KQKVNRKTEI ISEMCQIYEV NDKDVHGQES YTKNLDFKIN ENSTTRP00000005913/1-1030 ESKINE---- ---------- ---------- ---------- ---------- bmy_21067T0/1-1339 ESKINKKL-- RQKVNRKTEI ISEMYQMYED NDKDVRGQES YTKDLNFKIN BACU013919/1-827 ESKINKKL-- RQKVNRKTEI ISEMYQIYED NDKDEHGQEG YTKDLNLKIN 1051 1100 ENSP00000350447/1-1265 KSKQKLECQD IINKHYMEVN SNEKESCDQI LDSYKVVKKR KKESSCKAKN ENSBTAP00000042237/1-1243 --KQRPEGQA -VSGYCMEIN SDEKENCDEI SNPYKPIKKH GKESD-KAKN ENSTTRP00000005913/1-1030 ---------- ---------- ---------- ---------- ---------- bmy_21067T0/1-1339 KSKQRLEGQG IISGYCMEIN SNEKENCGQI SNPYKPVEKR GKESSGKAKN BACU013919/1-827 KSKQRLEGQG IISGYCMEIN SNEKENGGQI SNPYKPVKK- ---------- 1101 1150 ENSP00000350447/1-1265 ILTKAKNKLA SQLTESSQTS ISLESDLKHI TSEADSDPGN PVELCKTQKQ ENSBTAP00000042237/1-1243 ILAKSDNMPV LQLTGSSQMS V-LNLGLKHI TDEADSDTGN HMEPHRSPKL ENSTTRP00000005913/1-1030 ----SHNKPI LHLTGSSQTS V-LELGLKHT TDETDSDPGN QMELHKNP-Q bmy_21067T0/1-1339 ILAKGNNKPI LHLTGSSQTS VSLEPGLKHT TDETDSDPGN QMGLHKNPKQ BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000350447/1-1265 STTTLNKK-D LPFVEEIKEG ECQVKKVNKM TSKSKKRKTS IDPSPESHEV ENSBTAP00000042237/1-1243 STKTLNRKRK SHFVEVTKEG ECQVKKVNKM TSKSKKRKTF EDPSLDSHEL ENSTTRP00000005913/1-1030 STTMLNKKRD IPFMEVTKEG ECQVKKINKM TSKSKKRKTF VDPSPDSHEL bmy_21067T0/1-1339 STTTLNKKRD IPFEEVRKEG ECQXKKINKM TSKSKKRKTF IDPSPDSHEL BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000350447/1-1265 MERILDSVQG KSTVSEQADK ENNLENEKMV KNKPDFYTKA FRSLSEIHSP ENSBTAP00000042237/1-1243 VEMMSDTIQE VPVEPEYTVK GKKLENVETV KIKPDFYTKM LIPLSQMYSP ENSTTRP00000005913/1-1030 MEII------ ---------- ---------- ---------- ---------- bmy_21067T0/1-1339 MEIISDTVQG ISVESEYAVK EKNLENEEIV KIKPDFYTKM LKSLSQIYSP BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000350447/1-1265 NIQDSSFDSV REGLVPLSVS SGKNVIIKEN FALECSPAFQ VSDDEHEKMN ENSBTAP00000042237/1-1243 SRQDSSRNSV LEGSVPLSIS SNKN--LKEN FAPESSPIFQ LSDEVHEKMK ENSTTRP00000005913/1-1030 ---------- ---------- ---------- ---------- ---------- bmy_21067T0/1-1339 -------NSV PEGSKPLSIS SSKN--LKEN FALESSPIFQ ISDDVHEKMK BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000350447/1-1265 KMKFKVNRRT QKSGIGDRPL QDLSNTSFVS NNTAESENKS EDLSSERTSR ENSBTAP00000042237/1-1243 DMKFKVDQRP QRSEIGVRML QDLTNTSFVS NTAAKFENKV EDLSSELPSR ENSTTRP00000005913/1-1030 ---------- ------IRML QDLTNTSFVS NNTAKSENKL EDLSSELSSR bmy_21067T0/1-1339 KMKLKVNQRT QRSEIGVRML QDLTNTSFVS NNTAKSENKL EDLSSELSSR BACU013919/1-827 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000350447/1-1265 RRRCTPFYFK EPSLRDKMRR ENSBTAP00000042237/1-1243 RRRCTPLSLK EPSLKGRLKH ENSTTRP00000005913/1-1030 RRRCTPLSLK EPSLKGKMRR bmy_21067T0/1-1339 RRRCTPLSLK EPSLKGKMRR BACU013919/1-827 ---------- ----------