KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:17 2014 Check: 00 .. Name: ENSP00000313050/1-286 Len: 311 Check: 5901 Weight: 1.00 Name: ENSBTAP00000042249/1-286 Len: 311 Check: 5971 Weight: 1.00 Name: ENSTTRP00000014356/1-286 Len: 311 Check: 5281 Weight: 1.00 Name: BACU011973/1-198 Len: 311 Check: 8970 Weight: 1.00 Name: bmy_00706T0/1-280 Len: 311 Check: 2024 Weight: 1.00 // 1 50 ENSP00000313050/1-286 MAARVLRARG AAWAGGLLQR AAPCSLLPRL RTWTSSSNRS REDSWLKSLF ENSBTAP00000042249/1-286 MAARVLRAGG AASASGFLRR ASPGSLLPGL RKLTSSDNRP REDSWLKSLF ENSTTRP00000014356/1-286 MAERVLRAGG TASAGIFLRR AGPCNLQPGL WKLASSIIRP REDSWLKSLF BACU011973/1-198 MKGRDLSFDY GC-------- -----VKLGR GKLAFSNNRP REDSWLKSLF bmy_00706T0/1-280 ---------- ---------- ---------- -KLAFSNNRP REDSWLKSLF 51 100 ENSP00000313050/1-286 VRKVDPRKDA HSNLLAKKET SNLYKLQFHN VKPECLEAYN KICQEVLPKI ENSBTAP00000042249/1-286 VRKVDPRKDA HSNLLAKKET SSLYKLQFHN VKPECLEAYN KICQEVLPRI ENSTTRP00000014356/1-286 VRKVDPRKDA HSNLLAKRET SSLYKLQFHN VKPECLEAYN KICQEVLPKI BACU011973/1-198 VRKVDPRKDA HSNLLAKKET SSLYKLQFHN VKPECLEAYN KICQEVLPKI bmy_00706T0/1-280 VRKVDPRKDA HSNLLAKKET SSLYKLQFHN VKPECLEAYN KICQEVLPKI 101 150 ENSP00000313050/1-286 HEDKHYPCTL VGTWNTWYGE QDQAVHLWRY EGGYPALTEV MNKLRENKEF ENSBTAP00000042249/1-286 HEDKHYPCTL VGTWNTWYGE QDQAVHLWRY EGGYPALTEV MSKLKENQEF ENSTTRP00000014356/1-286 HEDKHYPCTL VGTWNTWYGE QDQAVHLWRY EGGYPVLTEV MNKLKENQEF BACU011973/1-198 HEDKHYPCTL VGTWNTWYGE QDQAVHLWRY EGGYPVLTEV MNKLKENQ-- bmy_00706T0/1-280 HEDKHYPCTL VGTWNTWYGE QDQAVHLWRY EGGYPVLTEV MNKLKENQEF 151 200 ENSP00000313050/1-286 LEFRKARSDM LLSRKNQLLL EFSFWNEPVP RSGPNIYELR SYQLR----- ENSBTAP00000042249/1-286 SEFRKARSNM LLSRKNQLLL EFSFWNEPIP RSGPNIYELR SYQLR----- ENSTTRP00000014356/1-286 AEFRKARSNM LLSRKNQLLL EFSFWNEPVP RSGPNIYELR SYQLR----- BACU011973/1-198 ---------- ---------- ---------- ---------- ---------- bmy_00706T0/1-280 AEFRKARSNM LLSRKNQLLL EFSFWNEPVP RSGPNIYELR SYQLRVNEAT 201 250 ENSP00000313050/1-286 ---------- ---------- PGTMIEWGNY WARAIRFRQD GNEAVGGFFS ENSBTAP00000042249/1-286 ---------- ---------- PGTMIEWGNY WARAIRFRQD GNEAVGGFFS ENSTTRP00000014356/1-286 ---------- ---------- PGTMIEWGNY WARAIRFRQD SNEAVGGFFS BACU011973/1-198 ---------- ---------- PGTMIEWGNY WARAIRFRQD SNEAVGGFFS bmy_00706T0/1-280 EYYFHYGIEE LTNQIQISFQ PGTMIEWGNY WARAIRFRQD SNEAVGGFFS 251 300 ENSP00000313050/1-286 QIGQLYMVHH LWAYRDLQTR EDIRNAAWHK HGWEELVYYT VPLIQEMESR ENSBTAP00000042249/1-286 QIGQLYMVHH LWAYKDLQTR EDIRNAAWHK HGWEELVYYT VPLIQEMESR ENSTTRP00000014356/1-286 QIGQLYMVHH LWAYKDLQTR EDIRNAAWHK HGWEELVYYT VPLIQEMESR BACU011973/1-198 QIGQLYMVHH LW-------- ---------- ---------- VPLIQEMESR bmy_00706T0/1-280 QIGQLYMVHH LWAYKDLQTR EDIRNAAWHK HGWEELVYYT VPLIQEMESR 301 350 ENSP00000313050/1-286 IMIPLKTSPL Q ENSBTAP00000042249/1-286 IMIPQKTSPL Q ENSTTRP00000014356/1-286 IMIPQKTSPL Q BACU011973/1-198 IMIPQKTSPL Q bmy_00706T0/1-280 IMIPQKTSPL Q