KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:53:17 2014 Check: 00 .. Name: ENSTTRP00000003210/1-334 Len: 345 Check: 6940 Weight: 1.00 Name: bmy_04432T0/1-247 Len: 345 Check: 8867 Weight: 1.00 Name: ENSP00000314792/1-295 Len: 345 Check: 663 Weight: 1.00 Name: ENSBTAP00000042260/1-295 Len: 345 Check: 8086 Weight: 1.00 // 1 50 ENSTTRP00000003210/1-334 ---------- QTSNQMQTDS LSPSPNPVS- VPLNNPTSAP RYGTVVPNRI bmy_04432T0/1-247 MGDLGSDREA QTSNQTQTDS LSPSPNPVSP VPLNNPTSAP RYGTVIPNRI ENSP00000314792/1-295 ---METESGP QTSNQMQTDS LSPSPNPVSP VPLNNPTSAP RYGTVIPNRI ENSBTAP00000042260/1-295 ---METESGA QTSNQTQTDS LSPSPNPVSP VPLNNPTSAP RYGTVIPNRI 51 100 ENSTTRP00000003210/1-334 FVGGIDLKXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY GFVTFETQED bmy_04432T0/1-247 FVGGIDFKTH ENDLRKFFSQ YGSVKEVKIV NDRAGVSKGY GFVTFETQED ENSP00000314792/1-295 FVGGIDFKTN ESDLRKFFSQ YGSVKEVKIV NDRAGVSKGY GFVTFETQED ENSBTAP00000042260/1-295 FVGGIDFKTN ENDLRKFFSQ YGSVKEVKIV NDRAGVSKGY GFVTFETQED 101 150 ENSTTRP00000003210/1-334 AQKILQEAEK LNYKDKKLNI GPAIRKQQVG IPRPSVMPAA GTMYLTTSTG bmy_04432T0/1-247 AQKILQENLW LE-------- GETLHKI--- --CSSIMPAA GTMYLTTSTG ENSP00000314792/1-295 AQKILQEAEK LNYKDKKLNI GPAIRKQQVG IPRSSIMPAA GTMYLTTSTG ENSBTAP00000042260/1-295 AQKILQEAEK LNYKDKKLNI GPAIRKQQVG IPRSSIMPAA GTMYLTTSTG 151 200 ENSTTRP00000003210/1-334 YPYTYHNGVA YFHTPEVASV PPPWPSRSIS SSTVMVAQPV YQQPANHYQG bmy_04432T0/1-247 YPYTYHNGVA YFHTPEVASV PPPWPSRSIS SSTVMVAQPV YQQPAYHY-- ENSP00000314792/1-295 YPYTYHNGVA YFHTPEVTSV PPPWPSRSVC SSPVMVAQPI YQQPAYHYQ- ENSBTAP00000042260/1-295 YPYTYHNGVA YFHTPEVTSV PPPWPSRSIS SSPVMVAQPV YQQPAYHYQ- 201 250 ENSTTRP00000003210/1-334 SKQCHTRRWC LLPFIKCNEA PAQCLPGQWQ WGVPQSPASS APFLHLQPSE bmy_04432T0/1-247 ---------- ---------- ---------- ----QSPASS APFLYLQPSE ENSP00000314792/1-295 ---------- ---------A TTQYLPGQWQ WSVPQPSASS APFLYLQPSE ENSBTAP00000042260/1-295 ---------- ---------A PAQCLPGQWQ WNVPQSPASS APFLYLQPSE 251 300 ENSTTRP00000003210/1-334 VIYQPVEIAQ DGGYVPPPLS LMEASVPEPY SDHGVQATYH QVYAPSAIAM bmy_04432T0/1-247 VIYQPVEIAQ DGGCVPPPLS LMEASVPE-- ---------H PYYLDEHLTF ENSP00000314792/1-295 VIYQPVEIAQ DGGCVPPPLS LMETSVPEPY SDHGVQATYH QVYAPSAITM ENSBTAP00000042260/1-295 VIYQPVEIAQ DGGCVPPPLS LMEASVPEPY SDHGVQATYH QVYASSAIAM 301 350 ENSTTRP00000003210/1-334 PAPVMQPEPI KCGAFIIKTT GQLSSSTDFL SYDPCVAETQ LQRTG bmy_04432T0/1-247 MTELIKP--- ---------- ---------- ---------- ----- ENSP00000314792/1-295 PAPVMQPEPI KTVWSIHY-- ---------- ---------- ----- ENSBTAP00000042260/1-295 PAPVMQPEPI KTVWSIHY-- ---------- ---------- -----