KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:53:19 2014 Check: 00 .. Name: ENSP00000355306/1-243 Len: 283 Check: 6360 Weight: 1.00 Name: ENSBTAP00000042269/1-237 Len: 283 Check: 3216 Weight: 1.00 Name: bmy_19561T0/1-268 Len: 283 Check: 709 Weight: 1.00 Name: ENSTTRP00000011154/1-241 Len: 283 Check: 5 Weight: 1.00 // 1 50 ENSP00000355306/1-243 ---------- ---------- ---------- -------MRS RKLTGAVRSS ENSBTAP00000042269/1-237 ---------- ---------- ---------- -------MRS RKLAGGVRSS bmy_19561T0/1-268 TPRREPRAAG SLLCWKALGR ALGLGDGAGG GNAPLTLMRS RKLAGGVRSS ENSTTRP00000011154/1-241 ---------- ---------- ---------- ------TLMN RKLAGGVRSS 51 100 ENSP00000355306/1-243 ARLKARSCSA ARLASAQEVA GSTSAKTACL TSSSHKATDT RTSKKFKCDK ENSBTAP00000042269/1-237 ARLRARSCSA AS-ASAQDTH VTTSAQTACQ TPSSHKATDR RTSKKFKYDK bmy_19561T0/1-268 ARLRARSCLA TS-ASAQEAR VATSARTACQ ASSSHKATDR RTSKKFKYDK ENSTTRP00000011154/1-241 ARLRARSCLA TS-ASAQEAH VATSARTACQ PSSSQKATDR RTSKKFKYDK 101 150 ENSP00000355306/1-243 GHLVKSELQK LVPKNDSASL PKVTPETPCE NE---FAEGS ALLPGSEAGV ENSBTAP00000042269/1-237 GHIVKSELQK --HRSDSAAT PS---ETPGT HEPLASAEDG ASLLGKEAGG bmy_19561T0/1-268 GHLVKSEFQK AIPQSDSTAA PTAPPETPGK HEPLASAEDR ARLPGKEASG ENSTTRP00000011154/1-241 GHLVKSEFQK PIPQSDGTAA PTATPETPGQ REPLASAEDR ARLPGKEASG 151 200 ENSP00000355306/1-243 SVQQGAASLP LGGCRVVSDS RLAKTRDGLS VPKHSAGSGA EESNSSSTVQ ENSBTAP00000042269/1-237 STPQGTAGPL PGRCGTESDA SPAETENEPL PPRHGAPVGG ESNGG---CP bmy_19561T0/1-268 SAPQGTAGLP RGHCGAMSDA CPAETEDRPP PPRCGAPAGG ESDGG---CP ENSTTRP00000011154/1-241 SAPQGTEGLP QGHCGVMSDA CPVETEDRPP PPRCGAPAGG DSDSG---CP 201 250 ENSP00000355306/1-243 KQNEPGLQTE DVQKPPLQMD NSVFLDDDSN QPMPVSRFFG NVELMQDLPP ENSBTAP00000042269/1-237 ARDGAALDLE QGPGAPLLMD GSALLDDDSN QPMPVSRFFG NVELMQDLPP bmy_19561T0/1-268 ERDGAAADLE QSHTPPLQMD NSVLLDDDSN QPMPVSRFFG NVELMQVTPV ENSTTRP00000011154/1-241 ERDGR--RTE QSHTPPLQMD NSVLLDDDSN QPMPVSRFFG NVELMQDLPP 251 300 ENSP00000355306/1-243 ASSSCPSMSR REFRKMHFRA KDDDDDDDDD AEM ENSBTAP00000042269/1-237 VSSSCPSMSR REFRKMHFRA KDDEEDDADG AET bmy_19561T0/1-268 AS----PLGR QP-------P ADRMPAHGPN SHV ENSTTRP00000011154/1-241 ASSSCPSMSR REFRKMHFRA KDDDDDDADG AET