KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:19 2014 Check: 00 .. Name: ENSP00000301272/1-282 Len: 324 Check: 6794 Weight: 1.00 Name: ENSBTAP00000042277/1-301 Len: 324 Check: 7817 Weight: 1.00 Name: BACU002609/1-230 Len: 324 Check: 6777 Weight: 1.00 Name: ENSTTRP00000001603/1-247 Len: 324 Check: 994 Weight: 1.00 Name: bmy_15833T0/1-202 Len: 324 Check: 700 Weight: 1.00 // 1 50 ENSP00000301272/1-282 MGSPGMVLGL LVQIW----- ----ALQEAS SLSVQQGPNL LQVRQGSQAT ENSBTAP00000042277/1-301 MGSPGTVLVL LVQFW----- ----VLQGVT GLTVQQAPKL LQVRQDSQVT BACU002609/1-230 MGSLGTVLVL LAQFW----- ----ALRGAT GLSVQQAPKL LQVRQDSQVT ENSTTRP00000001603/1-247 ---------- ---------- -----LQGAT GLSVQQAPKL LQVRQDSQVT bmy_15833T0/1-202 MGSPGTVLVL LAQFWGLTHL FCPPALQGAT GLSVQQAPKL LQVRQDSQVT 51 100 ENSP00000301272/1-282 LVCQVDQATA WERLRVKWTK DGAILCQPYI TNGSLSLGVC GPQGRLSWQA ENSBTAP00000042277/1-301 LACQVMHAQA WEWLRVEWIK DADIFCQTHI INGSLSKDVC GPQGWLSWQP BACU002609/1-230 LACQVVQAQA WERLHVEWTK DGDILCQTHI INGSLTVGVC GPWGRLSWQP ENSTTRP00000001603/1-247 LACQVVQAQA WEQLHIEWTK DGDTLCQTRI INGSLTVGVC GPWGRLSWQP bmy_15833T0/1-202 LACQVVQAQA WERLHVEWTK DGDILCQTHI INGSLTVGVC GPWGRLSWQP 101 150 ENSP00000301272/1-282 PSHLTLQLDP VSLNHSGAYV CWAAVEIPEL EEAEGNITRL FVDPDDPTQN ENSBTAP00000042277/1-301 PGNLTLQLNH VSLNDSGLYV CGATVEIPVW EEAQGNGTQL LVEPDYMTLN BACU002609/1-230 PGNLTLQLDH VSLNDSGLYV CWATVEIPDL EEAQGSGTQL LVE------- ENSTTRP00000001603/1-247 PGNLTLQLDH VSLNDSGLYV CCATVEIPDL EEAQGSGTQL LLERDGWLLN bmy_15833T0/1-202 PGNLTLQLDH VSLNDSGLYV CLATLEIPDL EEAQGSGTQL LVE------- 151 200 ENSP00000301272/1-282 RNRI-ASFPG FLFVLLGVGS MGVAAIVWGA WFWGRRSCQQ RDSGNSPGNA ENSBTAP00000042277/1-301 LPTIPSPIPG LYFAPLVTGA VAVAVFALGA GIWGRRRCRN GDAGKEPRSP BACU002609/1-230 --------TG LSFALLVTGA VAVAAFALGA WIWGRRRCQN RD----AEHP ENSTTRP00000001603/1-247 R-----SFSG LSFALLVTGA VAVAAFALGA WIWGRRRCRN RDAGNRAGNP bmy_15833T0/1-202 --------TG LSFALLVTGA VAVAAFALGA WIWGRRRCRN RD----AGNP 201 250 ENSP00000301272/1-282 FYSNVLYRPR -----GAPKK SEDCSG---- -EGKDQRGQS IYSTSFPQPA ENSBTAP00000042277/1-301 IYSNVLYRPR -----RAARK -KAWPVERKV LDSEDQKGQS FYSISFPQR- BACU002609/1-230 IKAHEESKAR ICGNLGVLKR SEESSG---- ---GSQRTTA VRGLF----- ENSTTRP00000001603/1-247 LYINALYQPR -----RAPRK SEAWPV---- --GKNQKGQS FYSISFLAPH bmy_15833T0/1-202 LYSNALYQPR -----RTPRK SEAWPV---- ---------- ---------- 251 300 ENSP00000301272/1-282 PRQPHLASRP CPSPRPCPSP RPGHPVSMVR VSPRPSPTQQ PRPKGFPKVG ENSBTAP00000042277/1-301 P-------KS HMAPKFCPSP RPIHPISAVR ISPGPGSSGQ PRSRGFLEVG BACU002609/1-230 --------DD SQAFRLLSLE RPVQLAEK-- ---------- ---------- ENSTTRP00000001603/1-247 P-------QA ASGSKSSSSP RPSHPISAVG VPLG------ -RPRGFFEVG bmy_15833T0/1-202 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000301272/1-282 EE-------- ---------- ---- ENSBTAP00000042277/1-301 REIRTAGEPE KTYPQRLYKD VTYS BACU002609/1-230 ---------- ---------- ---- ENSTTRP00000001603/1-247 DE-------- ---------- ---- bmy_15833T0/1-202 ---------- ---------- ----