KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:53:22 2014 Check: 00 .. Name: ENSP00000334940/1-652 Len: 676 Check: 1803 Weight: 1.00 Name: ENSBTAP00000042309/1-666 Len: 676 Check: 5022 Weight: 1.00 Name: bmy_13255T0/1-541 Len: 676 Check: 5315 Weight: 1.00 Name: BACU008343/1-662 Len: 676 Check: 8838 Weight: 1.00 // 1 50 ENSP00000334940/1-652 MGNLQSEPSA GGGSRKVQPS DRAPDSRRTS LVEPEMT--S QAMRLTRGLG ENSBTAP00000042309/1-666 MGNVQSEPSA GGGSRKEQAS DRSSDSRRTS LVEPEVTPSS PAMRLARGLG bmy_13255T0/1-541 MGNVQSEPSA GGGSRKEQAS DRSSNSRRTS LVEPEGTPSS PAMRLARGLG BACU008343/1-662 MGNVQSEPSA GGGSRKEQAS DRSSNSRRTS LVEPERTPSS PAMRLARGLG 51 100 ENSP00000334940/1-652 VWFPGSATPP GLMVPREPQA SPSTLPLTLE RPSPVMPPPE E--AAAVSAP ENSBTAP00000042309/1-666 VWFPGSSAPP GLLVPPEPQA SPSPLPLTLE LPSPVTPPSE EAAAAAVSTP bmy_13255T0/1-541 VWFPGSSAPP GLLVPPEPQA SPSPLPLTLE LPSPVTPPSE EATAAAVSTP BACU008343/1-662 VWFPGSSAPP GLLVPPEPQA SPSPLPLTLE LPSPVTPPSE EATAVAVSTP 101 150 ENSP00000334940/1-652 PPAPAGTLLP GPSKWQKPAG TPVPRIRRLL EASHRGQGDP PSLRPLKPPP ENSBTAP00000042309/1-666 PPPPVGTLLP APSKWRKPMG TPVPRIRGLL EASHRGQGDP PSLRPL--PP bmy_13255T0/1-541 PPPPVGTLLP APSKWRKPTG TPVPRIRGLL EASHRGQGDP PNLRPL--PP BACU008343/1-662 PPPPVGTLLP APSKWRKPTG TPVPRIRGLL QASHRGQGDP PNLRPL--PP 151 200 ENSP00000334940/1-652 PPRQLSVK-- DTVPRAPSQF PPPLETWKPP PPLPSERQPA DRRITPALAT ENSBTAP00000042309/1-666 PSLQLAEEDP DPVPRAPSPT PPPLEPRKPP LPPPSDGQHP DRRITPALAT bmy_13255T0/1-541 PPRQLTGEDP DPVPRAPSPT PPPLEPRKPP LRTPSDPQPP ERRSTPALAT BACU008343/1-662 PPRQLTGEDP DPVPRAPSPT PPPLEPRKPP LPTPSDPQPP ERRSTPALAT 201 250 ENSP00000334940/1-652 PASPPTESQA GPRNQGQTAG RARGGAPPHA GEGEMAQPAD SESGLSLLCK ENSBTAP00000042309/1-666 PAATPTESQA RLGSEGQTAS GARSGAPPQA GEGEMARPAA SESGLSLLCK bmy_13255T0/1-541 SAATPTESQA RHGSEGQTAG GARRGAPPQA GEGEMARPVA SEPGLSLLCK BACU008343/1-662 SAATPTESQA RHGSEGQTAG GARRGAPPQA GEGEMARSVV YEPGLSLLCK 251 300 ENSP00000334940/1-652 ITFKSRPSLA PPAASSSLAA KASL-GGGGG GGLFAAS-GA ISYAEVLKQG ENSBTAP00000042309/1-666 VTFKSGPPLP PAAASSSLAT KASLGGGGGG GGLFAAS-GA ISYAEVLKQG bmy_13255T0/1-541 VTFKSGPQLC PAAASSSLVA KASL-GGGGG GGLFAAASGA ISYAEVLKQG BACU008343/1-662 VTFKSGPQLF PEAASSSLAA KASL-GGSGG GGLFSAALGA ISYAEVLKQG 301 350 ENSP00000334940/1-652 PLPPGAARPL GEVSRGAQEA EGGDGDGEGC SGPPSAPASQ ARALPPPPYT ENSBTAP00000042309/1-666 PLAPGASRPS GEVPRATQEA EGGDGDGEGC SGPPSASASH ARTLPPPPYT bmy_13255T0/1-541 PLAPGASRPS GEVPRGTQEA EGGDGDGEGC SGPPSAPASH ARILTPPSYT BACU008343/1-662 PLAPGASRPS GEVPRGTQEA EGGDGDGEGC SGPPSAPASH ARTLTPPSYT 351 400 ENSP00000334940/1-652 TFPGSKPKFD WVSAPDGPER HFRFNGAGGG IGAPRRRAAA LSGPWGSPPP ENSBTAP00000042309/1-666 TFPGSKPKFD WVSPPDGPER HFRFNGAGGG VGAPRRRAAA FSGPWGSAPP bmy_13255T0/1-541 TFPGSKPKFD WVSPPDGPER HFRFSGAGGG VGAPRRRAA- ---------- BACU008343/1-662 TFPGSKPKFD WVSPPDGPEH HFRFSGAGGG VGAPRRRAVA LSGPRGSPLP 401 450 ENSP00000334940/1-652 PPEQIHSAPG PRRPAPALLA PPTFIFPAPT NGEPMRPGPP GLQEL----- ENSBTAP00000042309/1-666 ASGQMHPAPG SRRPAPALLA PPMFIFPAPT NGEPVRPRPP GPPELMPPPP bmy_13255T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU008343/1-662 APGQMHPAPG PRRPAPALLA PPVFIFPAPT NGETVRPGPP SPQKLLPPPP 451 500 ENSP00000334940/1-652 ----PPLPPP TPPPTLQPPA LQPTPLPVAP PLTPGLGHKE SALAPTAAPA ENSBTAP00000042309/1-666 -PTPPPTPPP APPPTPQPPV IQTTPLPVTL PPAPGPGHLE SAVTPAPAPS bmy_13255T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU008343/1-662 APQHPPAPPP TPPPAPQPPV LQPTPLPVAL PPTPSPGHLE SAVAPAPAPS 501 550 ENSP00000334940/1-652 LPPALAADQ- ------APAP SPAPAPTVAE PSPPVSAPAP AAAPIKTRTR ENSBTAP00000042309/1-666 LSSALAADQA APAPAPAPAP SPAPAPTVAE PLP------P APAPAKTRTR bmy_13255T0/1-541 ---------- -----PGPAP PPAPAPTVAE PSP------P APAPVKVRTR BACU008343/1-662 LPLALAADQ- ----APGPAP PPAPAPTVAE PSP------P APAPVKVRTR 551 600 ENSP00000334940/1-652 RNKGSRAARG ATRKDGLHGD GPRERATATV PDSSGGGGGG SGASQTGAAN ENSBTAP00000042309/1-666 RNKGPRAARA VPREDGAPRD GPRERTATTV TDSGGAGGGG SGALPAGTAN bmy_13255T0/1-541 RNKGPRAARA APRENGAPGG GPRECTATTV TDSGGGGGGG SGAPPAGTVN BACU008343/1-662 RNKRPRAARA APRENGAPGD GPRECTATTV TDSGGGGGGG SGAPPAGTVN 601 650 ENSP00000334940/1-652 TRAARHWLPF QVLNSCPCKC YCHHQPRHRR LPRNVSAWLS TSTNHLGEPP ENSBTAP00000042309/1-666 SGAARHWPPF QVLNSCPCKC YCRHQPRHRR LPRNVSAWLS TPTNHLSEPP bmy_13255T0/1-541 SGATRHWPPF QVLNSCPFKC YCRHQPRHRR LPRNVSAWLS TPTNHLSEPP BACU008343/1-662 SGAARHWPSF QVLNSCPFKC YCRHQPRHRR LPRNVSAWLS TPTNHLSEPR 651 700 ENSP00000334940/1-652 WVATIKLSGS LVAKLEHYDL QATHSN ENSBTAP00000042309/1-666 WVATIKLAGS LVAGLEHYDL QATHSN bmy_13255T0/1-541 WVTTIKLAGS LVAGLEHYDL QATHSN BACU008343/1-662 WVTTITLAGS LVAGLEHYDL QATHSN