KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:22 2014 Check: 00 .. Name: ENSP00000215071/1-350 Len: 351 Check: 8660 Weight: 1.00 Name: ENSBTAP00000042312/1-287 Len: 351 Check: 7867 Weight: 1.00 Name: bmy_13256T0/1-300 Len: 351 Check: 147 Weight: 1.00 Name: BACU008344/1-287 Len: 351 Check: 7796 Weight: 1.00 Name: ENSTTRP00000010062/1-351 Len: 351 Check: 7350 Weight: 1.00 // 1 50 ENSP00000215071/1-350 MFIKGRAPRA PPRERRRATR GGLRQ-VVAP PRALGSTSRP HFRRASVCRR ENSBTAP00000042312/1-287 ---------- ---------- ---------- ---------- ---------- bmy_13256T0/1-300 MFLKSRAPRA PPRERLNANP GRRRQTVAAP PPALGSTSRP HFRRARRCRR BACU008344/1-287 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010062/1-351 MFLKSRAPRA PPRERLNANP GRRRRTVAAP PPALGSTSRP HFCRARRSRR 51 100 ENSP00000215071/1-350 RCRKSGGLLA ASRKMAAAAV NGAAGFSSSG PAATSGAVLQ AATGMYEQLK ENSBTAP00000042312/1-287 ---------- ----MAATAV NGVAGTSSSG SAAASGAILQ AAAGMYEQLK bmy_13256T0/1-300 RCRKSGGRFA ASRKMAAAAV NGVAGASSSG PAAASGAVLQ AAAGMYEQLK BACU008344/1-287 ---------- ----MAAAAV NGVAGASSSG PAAASGAVLQ AAAGMYEQLK ENSTTRP00000010062/1-351 RCRKSGGRFA ASRKMAAAAV NGVAGASSSG PAAASGAVLQ AAAGMYEQLK 101 150 ENSP00000215071/1-350 GEWNRKSPNL SKCGEELGRL KLVLLELNFL PTTGTKLTKQ QLILARDILE ENSBTAP00000042312/1-287 GEWNRKSPNL SKCGEELGRL KLVLLELNFL PTTGTKLTKQ QLILARDILE bmy_13256T0/1-300 GEWNRKSPNL SKCGEELG-- ---------- ---------- -----RDILE BACU008344/1-287 GEWNRKSPNL SKCGEELGRL KLVLLELNFL PTTGTKLTKQ QLILARDILE ENSTTRP00000010062/1-351 GEWNRKSPNL SKCGEELGRL KLVLLELNFL PTTGTKLTKQ QLILARDILE 151 200 ENSP00000215071/1-350 IGAQWSILRK DIPSFERYMA QLKCYYFDYK EQLPESAYMH QLLGLNLLFL ENSBTAP00000042312/1-287 IGAQWSILRK DIPSFERYMA QLKCYYFDYK EQLPESAYMH QLLGLNLLFL bmy_13256T0/1-300 IGAQWSILRK DIPSFERYMA QLKCYYFDYK EQLPESAYMH QLLGLNLLFL BACU008344/1-287 IGAQWSILRK DIPSFERYMA QLKCYYFDYK EQLPESAYMH QLLGLNLLFL ENSTTRP00000010062/1-351 IGAQWSILRK DIPSFERYMA QLKCYYFDYK EQLPESAYMH QLLGLNLLFL 201 250 ENSP00000215071/1-350 LSQNRVAEFH TELERLPAKD IQTNVYIKHP VSLEQYLMEG SYNKVFLAKG ENSBTAP00000042312/1-287 LSQNRVAEFH TELERLPAKD IQTNVYIKHP VSLEQYLMEG SYNKVFLAKG bmy_13256T0/1-300 LSQNRVAEFH TELERLPAKD IQTNVYIKHP VSLEQYLMEG SYNKV----- BACU008344/1-287 LSQNRVAEFH TELERLPAKD IQTNVYIKHP VSLEQYLMEG SYNKVFLAKG ENSTTRP00000010062/1-351 LSQNRVAEFH TELERLPAKD IQTNVYIKHP VSLEQYLMEG SYNKVFLAKG 251 300 ENSP00000215071/1-350 NIPAESYTFF IDILLDTIRD EIAGCIEKAY EKILFTEATR ILFFNTPKKM ENSBTAP00000042312/1-287 NIPAESYTFF IDILLDTIRD EIAGCIEKAY EKILFTEATR ILFFNTPKKM bmy_13256T0/1-300 ---------- ---------D EIAGCIEKAY EKILFTEATR ILFFNTPKKM BACU008344/1-287 NIPAESYTFF IDILLDTIRD EIAGCIEKAY EKILFTEATR ILFFNTPKKM ENSTTRP00000010062/1-351 NIPAESYTFF IDILLDTIRD EIAGCIEKAY EKILFTEATR ILFFNTPKKM 301 350 ENSP00000215071/1-350 TDYAKKRGWV LGPNNYYSFA SQQQKPEDTT IPSTELAKQV IEYARQLEMI ENSBTAP00000042312/1-287 TDYAKKRGWV LGLNNYYSFA SQQQKPEDTT IPSTELAKQV IEYARQLEMI bmy_13256T0/1-300 TDYAKKRGWV LGLNNYYSFA SQQQKPEDTT IPSTELAKQV IEYARQLEMI BACU008344/1-287 TDYAKKRGWV LGLNNYYSFA SQQQKPEDTT IPSTELAKQV IEYARQLEMI ENSTTRP00000010062/1-351 TDYAKKRGWV LGLNNYYSFA SQQQKPEDTT IPSTELAKQV IEYARQLEMI 351 400 ENSP00000215071/1-350 V ENSBTAP00000042312/1-287 V bmy_13256T0/1-300 V BACU008344/1-287 V ENSTTRP00000010062/1-351 V