KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:23 2014 Check: 00 .. Name: ENSP00000309163/1-329 Len: 371 Check: 6014 Weight: 1.00 Name: ENSTTRP00000010608/1-329 Len: 371 Check: 6501 Weight: 1.00 Name: ENSBTAP00000042314/1-308 Len: 371 Check: 2788 Weight: 1.00 Name: bmy_07817T0/1-371 Len: 371 Check: 8765 Weight: 1.00 Name: BACU003523/1-329 Len: 371 Check: 6779 Weight: 1.00 // 1 50 ENSP00000309163/1-329 MAALGGDGLR LLSVSRPERP PESAALGGLG PGLCCWVSVF SCLSLACSYV ENSTTRP00000010608/1-329 MAALGGDGLR LLSVSRPERQ PESAALGGPG PGLCCWVSVF SCLSLACSYV ENSBTAP00000042314/1-308 MAALGGDGFR LLSVSRPERQ PESAALGGPG PGLCCWVSVF SCLSLACSYV bmy_07817T0/1-371 MAALGGDGLR LLSVSRPERQ PESAALGGPG PGLCCWVSVF SCLSLACSYV BACU003523/1-329 MAALGGDGLR LLSVSRPERQ PESAALGGPG PGLCCWVSVF SCLSLACSYV 51 100 ENSP00000309163/1-329 GSLYVWKSEL PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS ENSTTRP00000010608/1-329 GSLYVWKSEL PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS ENSBTAP00000042314/1-308 GSLYVWKSEL PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS bmy_07817T0/1-371 GSLYVWKSEL PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS BACU003523/1-329 GSLYVWKSEL PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS 101 150 ENSP00000309163/1-329 LLTLMGFRLE GIFPAALLPL LLTMILFLGP LMQLSMDCPC DLADGLKVVL ENSTTRP00000010608/1-329 LLTLMGFRLE GIFPAALLPL LLTMILFLGP LMQLSMDCPC DLADRLKVVL ENSBTAP00000042314/1-308 LLTLMGFRLE GIFPAALLPL LLTMILFLGP LMQLSMDCPC DLADGLKVVL bmy_07817T0/1-371 LLTLMGFRLE GIFPAALLPL LLTMILFLGP LMQLSMDCPC DLADGLKVVL BACU003523/1-329 LLTLMGFRLE GIFPAALLPL LLTMILFLGP LMQLSMDCSC DLADGLKVVL 151 200 ENSP00000309163/1-329 APRSWARCLT DMRWLRNQVI APLTEELVFR ACMLPMLAPC MGLGPAVFTC ENSTTRP00000010608/1-329 APRSWARCLT DMRWLRNQVI APLTEELVFR ACMLPMLAPC TGLGPAVFTC ENSBTAP00000042314/1-308 APRSWARCLT DMRWLRNQVI APLTEELVFR ACMLPMLAPC TGLGPAVFTC bmy_07817T0/1-371 APRSWARCLT DMRWLRNQVI APLTEELVFR ACMLPMLAPC TGLGPAVFTC BACU003523/1-329 APRSWARCLT DMRWLRNQVI APLTEELVFR ACMLPMLAPC TGLGPAVFTC 201 250 ENSP00000309163/1-329 PLFFGV---- ---------- ---------- ---------- --------AH ENSTTRP00000010608/1-329 PLFFGV---- ---------- ---------- ---------- --------AH ENSBTAP00000042314/1-308 PLFFGV---- ---------- ---------- ---------- --------AH bmy_07817T0/1-371 PLFFGVGEFV QPGPAEIFLA WEPRMGFGAR AGPIGQAGRN VTWFSSFSAH BACU003523/1-329 PLFFGV---- ---------- ---------- ---------- --------AH 251 300 ENSP00000309163/1-329 FHHIIEQLRF RQSSVGNIFL SAAFQFSYTA VFGAYTAFLF IRTGHLIGPV ENSTTRP00000010608/1-329 FHHIFEQLRF RQSSVGSIFL SAAFQFSYTA VFGAYTAFLF IRTGHLIGPV ENSBTAP00000042314/1-308 FHHIFEQLRF RQSSVGSIFL SA-------- ---------- ---GHLIGPV bmy_07817T0/1-371 FHHIFEQLRF RQSSVGSIFL SAAFQFSYTA VFGAYTAFLF IRTGHLIGPV BACU003523/1-329 FHHIFEQLRF RQSSVGSIFL SAAFQFSYTA VFGAYTAFLF IRTGHLIGPV 301 350 ENSP00000309163/1-329 LCHSFCNYMG FPAVCAALEH PQRRPLLAGY ALGVGLFLLL LQPLTDPKLY ENSTTRP00000010608/1-329 LCHSFCNYMG FPAVCAALEH PQRRLLLAGY ALGVGFFLLL LQPLTDPKLY ENSBTAP00000042314/1-308 LCHSFCNYMG FPAVCAALEH PQRRPLLAGY ALGVGLFLLL LQPLTDPKLY bmy_07817T0/1-371 LCHSFCNYMG FPAVCAALEH PQRWPLLAGY ALGVGLFLLL LQPLTDPKLY BACU003523/1-329 LCHSFCNYMG FPAVCAALEH PQRWPLLAGY ALGVGLFLLL LQPLTDPKLY 351 400 ENSP00000309163/1-329 GSLPLCVLLE RAGDSEAPLC S ENSTTRP00000010608/1-329 GSLPLCVLLE RAGDSEAPLC S ENSBTAP00000042314/1-308 GSLPLCVLLE RAGDSEAPLC S bmy_07817T0/1-371 GSLPLCVLLE RAGDSEAPLC S BACU003523/1-329 GSLPLCVLLE RAGDSEAPLC S