KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:24 2014 Check: 00 .. Name: ENSP00000414635/1-464 Len: 528 Check: 5958 Weight: 1.00 Name: ENSBTAP00000042336/1-451 Len: 528 Check: 9551 Weight: 1.00 Name: bmy_21668T0/1-480 Len: 528 Check: 5738 Weight: 1.00 Name: BACU018542/1-419 Len: 528 Check: 1108 Weight: 1.00 Name: ENSTTRP00000001768/1-420 Len: 528 Check: 3375 Weight: 1.00 // 1 50 ENSP00000414635/1-464 ---------- ---------- ---------- ---------- --------MA ENSBTAP00000042336/1-451 ---------- ---------- ---------- ---------- ---------- bmy_21668T0/1-480 MQRACSAARS RPGLSPGPHL PPHLRPLLRR GLRPTVAVRN RGSFGAGLAR BACU018542/1-419 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000001768/1-420 ---------- ---------- ---------- ---------- ---------M 51 100 ENSP00000414635/1-464 AQPPRPVGER SMGSSREAAR APARSPA--- ---WASTQAS T--------- ENSBTAP00000042336/1-451 -DASRKAAER --GNRRQWAY YLTEVSSP-- ---FVSLP-- ---------- bmy_21668T0/1-480 TKRARAVGAR PIPPSRLRAR GGPAGGCPWE PQLWPELRGA PKRRRERSPK BACU018542/1-419 QRSPQQAG-- --PESRTPPS APSTTPTP-- --AWAAAD-- ---------- ENSTTRP00000001768/1-420 QRSPQEAR-- --PESRTPPS APSTTPTP-- --AWAAADG- ---------- 101 150 ENSP00000414635/1-464 -PGAALAVQR ESPESGLQKH YSNLCMEKSQ KINPFILHIL QEVDEEIKKG ENSBTAP00000042336/1-451 -------RKV SASIGGLQEY YYDLCMEKSQ EIKPFILQIL QEVDKEIEKG bmy_21668T0/1-480 FPQRVRSSRA AEPIGGLQEY YYELCMEKSQ EIKPFILHIL QEVDEEIEKG BACU018542/1-419 -------CSA AEPIGGLQEY YYELCMEKSQ EIKPFILHIL QEVDEEIEKG ENSTTRP00000001768/1-420 -------SEA AEPIGGLQEY YYELCVEKSQ EIKPFILHIL QKVDEEIEKG 151 200 ENSP00000414635/1-464 LAAGITLNIA GNNRLVPVER VTGEDFWILS KILKNCLYIN GLDVGYNLLC ENSBTAP00000042336/1-451 RSVGITLNIA GNSRSVSGER VTGEDFWILC RVLKNNSYIN GLDVRYNLLS bmy_21668T0/1-480 L-VGITLNVA GNCHLMPVER VTGEDFWILC RILKNNPYIN GLDVRYNLIS BACU018542/1-419 L-VGITLNVA GNCHLMPVER VTGEDFWILC RILKNNPYIN GLDVRYNLIS ENSTTRP00000001768/1-420 L-VGITLNVA GNCRLMPVER VTGEDFWILC RILKNNPYIN GLDVRYNLIS 201 250 ENSP00000414635/1-464 DVGAYYAAKL LQKQLNLIYL NLMFNDIGPE GGELIAKVLH KNRTLKYLRM ENSBTAP00000042336/1-451 DVGAYYAAKL LQKQQNLIYL NLMFNDIGPE GGELIAKALH KNRTLKHLRM bmy_21668T0/1-480 D--------- ---------- ---------- ---------- KNTTLKHLRM BACU018542/1-419 DVGVSYAAKL LQKQHNLIYL NLMFNDIGPE GGELIAKALH KNTTLKHLRM ENSTTRP00000001768/1-420 DVGASYAAEL LQKQHNLIYL NLMFNDIRPE GGELIAKALH KNTTLKHLRM 251 300 ENSP00000414635/1-464 TGNKIENKGG MFFAAMLQIN SSLEKLDLGD CDLGMQSVIA FATVLTQNQA ENSBTAP00000042336/1-451 TGNKIENKGG MFFAAMLQIN SSLEKLDLGD CDLGMPSVIA FATVLTQNQT bmy_21668T0/1-480 TGNKIENKGG MFFAAMLQIN SSLEKLDVGD CDLGMQSVIA FATVLTQNQT BACU018542/1-419 TGNKIENKGG MFFAAMLQIN SSLEKLDVGD CDL------- ---------- ENSTTRP00000001768/1-420 TGNKIENKGG MFFAAMLQIN SSLEKLDLGD CDL------- ---------- 301 350 ENSP00000414635/1-464 IKAINLNRPI LYSEQEESTV HVGRMLKENH CLVALHMCKH DIKNSGIQQL ENSBTAP00000042336/1-451 IKGLNLNRPI LYGEQEESTV HLGHMLKENQ CLVELHMCKH DIKNCGMKQL bmy_21668T0/1-480 IKGLNLNRPI LYGEQEESTV HLGHMLKENQ CLVELHMCKH DIKNCGMKQL BACU018542/1-419 ---------- -----EESTV HLGHMLKENQ CLVELHMCKH DIKNCGMKQL ENSTTRP00000001768/1-420 ---------- -----EESTV HLGHMLKENQ CLVELHLCKH DIKNCGMKQL 351 400 ENSP00000414635/1-464 CDALYLNSSL RYLDVSCNKI THDGMVYLAD VLKSNTTLEV IDLSFNRIEN ENSBTAP00000042336/1-451 CDALHLNRSL QYLDVSCNKI TQDGMKCLAD VLKSNTTLEV IDLSFNRMEN bmy_21668T0/1-480 CDALYLNRSL RYLD------ --DGMVCLAD ALKSNTTLEI IDLSFNRIEN BACU018542/1-419 CDALYLNRSL RYLDVSCNKI TQDGMVCLAN VLKSNTTLEV IDLSFNRIEN ENSTTRP00000001768/1-420 CDALYLNRSL RYLDVSCNKI TQDGMVCLAD VLKKNTTLEV IDLSFNRIEN 401 450 ENSP00000414635/1-464 AGANYLSETL TSHNRSLKAL SVVSNNIEGE GLVALSQSMK TNLTFSHIYI ENSBTAP00000042336/1-451 AGANYLSDAL ASHNRTLKAL SVVSNNIEGK GLVALSQSMK TNPTLSHIYI bmy_21668T0/1-480 AGANYLSDAL ASHNRTLKAL SVVSNNIEGE GLVALSQSMK TNPTLSNIYI BACU018542/1-419 AGANYLSDAL ASHNRTLKAL SVVSNNIEGE GLVALSQSMK TNPTLSNIYI ENSTTRP00000001768/1-420 AGANYLSDTL ASHNRTLKAL SVVSNNIKGE GLVALSQSMK TNPTLSNIYL 451 500 ENSP00000414635/1-464 WGNKFDEATC IAYSDLIQMG CLKPDNTDVE PFVVDGRVYL AEVSNGLKKH ENSBTAP00000042336/1-451 WGNKFDEATC VAYSDLIHTG RLKSDNTDVE PFVVDGHVYL AEVSNGLKRH bmy_21668T0/1-480 WGNKFDEATR VAYSDLIHMG RLKSDNTDVE PFVVDGHVYL AEVSNGLKRH BACU018542/1-419 WGNKFDEATR VAYSDLIHMG RLKSDNTDVE PFVVDGHVYL AEVSNGLKRH ENSTTRP00000001768/1-420 WGNKFDEATC VAYSDLIHMG RLKSDNTDVE PYVVDGHVYL AEVSNGLKRH 501 550 ENSP00000414635/1-464 YYWTSTYGES YDHSSNAGFA LVPVGQQP ENSBTAP00000042336/1-451 YYWTPGYGEA CSPSSNAGFS LAPVGQHL bmy_21668T0/1-480 YYWTPGYGEA CSPSSNAGFT LVPVGQYL BACU018542/1-419 YYWTPGYGEA CSPSSNAGFT LVPVGQYL ENSTTRP00000001768/1-420 YYWTPGYGEA CSLSSNAGLT LVPVGQYL