KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:53:25 2014  Check: 00 ..

 Name: ENSP00000340083/1-259     Len:    270  Check:  6838  Weight:  1.00
 Name: bmy_06526T0/1-261         Len:    270  Check:  4707  Weight:  1.00
 Name: BACU005877/1-257          Len:    270  Check:  9718  Weight:  1.00
 Name: ENSBTAP00000042369/1-257  Len:    270  Check:  2051  Weight:  1.00

//


                          1                                                   50
ENSP00000340083/1-259     MKHSKKTYDS FQDELEDYIK VQKARGLEPK TCFRKMKGDY LETCGYKGEV 
bmy_06526T0/1-261         MKHS-KTCDS FQDELEDYIK VQKARDLEPK TCFRKMREDY LETCGCKEEV 
BACU005877/1-257          MKHSKKTSDS FQDELEDYIK VQKARGLEPK TCFRKRREDY LETCGYKEEI 
ENSBTAP00000042369/1-257  MKHSKKTYDS FQDELEDYIK VQKARGLEPK TCFRKMREDY LETYGYKEEV 


                          51                                                 100
ENSP00000340083/1-259     NSRPTYRMFD QRLPSETIQT YPRSCNIPQT VENRLPQWLP AHDSRLRLDS 
bmy_06526T0/1-261         DSRPRCRI-- --LLCETVQI YQRPCSISQT VEKRLPQWLA AHDSRLRLDS 
BACU005877/1-257          DSRPKCRMFE QRLPYEPVQT YRRSCNISQA VEKRLPQWLP AHDSRLRLDS 
ENSBTAP00000042369/1-257  DSRPRCRMFE QRLPYGTVQT YPRSCSISQR VEKQLPQWLP AHDSRLRLDS 


                          101                                                150
ENSP00000340083/1-259     LSYCQFTRDC FSEKPVPLNF NQQEYICGSH GVEHRVYKHF SSDNSTSTHQ 
bmy_06526T0/1-261         LSCCQFTRDC FSGKPVALNF SQQEYNCSSY SVESGVYRHL SSENSTGAHQ 
BACU005877/1-257          LSYCQFTRDC FSGKPVALNF SQQEYSCSSY SVESGVYRHL SLENSTSAHQ 
ENSBTAP00000042369/1-257  LSYSQFTRDC FSGKPVPPNL SQHESNCSSY SVESGVYRHL SSENNTSAHQ 


                          151                                                200
ENSP00000340083/1-259     ASHKQIHQKR KRHPEEGREK SEEERSKHKR KKSCEEIDLD KHKSIQRKKT 
bmy_06526T0/1-261         ASYKQIHQKR KRHPEEGREK REEERPKHKR KKACEEIDLD KYKCIQRNKT 
BACU005877/1-257          ASYKQIQQKR KRHPEEGREK PEEERPKHKR KKAYEEIDLD KHKSIRRNKT 
ENSBTAP00000042369/1-257  ASYKHIHQKR KRHTEEGREK PEEERPKHKR KKACEEIDLD KYKSIQTSKT 


                          201                                                250
ENSP00000340083/1-259     EVEIETVHVS TEKLKNRKEK KSRDVVSKKE ERKRTKKKKE QGQERTEEEM 
bmy_06526T0/1-261         EV--ET--VS TEKLKNRKEK KSRDVASKKE EHKRSKEKKE QGKERKKRRC 
BACU005877/1-257          EV--ETVRVS TKKLKNRKDK KSRDVASKKE ERKHRKEKKE QGKERTEEEM 
ENSBTAP00000042369/1-257  EA--ETVRVS TEKLKNRKEK RSRDVASKKE ERKRRKEKKE QGQERTEEEM 


                          251                                                300
ENSP00000340083/1-259     LWDQSILGF- ---------- 
bmy_06526T0/1-261         FGTSLSLDFE ALALVLLRLN 
BACU005877/1-257          LWDQSILGF- ---------- 
ENSBTAP00000042369/1-257  LWDQSILGF- ----------