KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:27 2014 Check: 00 .. Name: ENSP00000298292/1-837 Len: 898 Check: 4864 Weight: 1.00 Name: ENSBTAP00000042390/1-829 Len: 898 Check: 740 Weight: 1.00 Name: ENSTTRP00000007241/1-823 Len: 898 Check: 4761 Weight: 1.00 Name: bmy_06159T0/1-574 Len: 898 Check: 5712 Weight: 1.00 Name: BACU015317/1-807 Len: 898 Check: 2767 Weight: 1.00 // 1 50 ENSP00000298292/1-837 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042390/1-829 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007241/1-823 ---------- ---------- ---------- ---------- ---------- bmy_06159T0/1-574 MATSTRCPRL NSLAVTDLRR LTLRRPATLR RVPPTRSQIH LPWPLGKEPR BACU015317/1-807 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000298292/1-837 --MAKAAASS SLEDLDLSGE EVQRLTSAFQ DPEFRRMFSQ YAEELTDPEN ENSBTAP00000042390/1-829 --MAKEAASS PLEDLDLSGE EVQRLTSAFQ DPEFRRMFSE YAEELTDPEN ENSTTRP00000007241/1-823 --MAKAATSS PLEDLDLSGE EVQQLTSAFQ DPEFRRMFSE YAEELTDPEN bmy_06159T0/1-574 GSMAKAAASS PLEDLDLSGE EVQQLTSAFQ DPEFRRMFSE YAEEITDPEN BACU015317/1-807 --MAKAAASS PLEDLDLSGE EVQQLTSAFQ DPEFRRMFSE YAEEITDPEN 101 150 ENSP00000298292/1-837 RRRYEAEITA LERERGVEVR FVHPEPGHVL RTSLDGARRC FVNVCSNALV ENSBTAP00000042390/1-829 RRRYEEEITA LERERGVEVR FVHPEPGHVL RTSLDGTRRC FVNVCSNALV ENSTTRP00000007241/1-823 RRRYEEEITA LERERGVEVR FVHPEPGHVL RTSLDGTRRC FVNVCSNALV bmy_06159T0/1-574 RRRYEEEITA LERERGVEVR FVHPEPGHVL RTSLDGTRRC FVNVCSNALV BACU015317/1-807 RRRYEEEITA LERERGVEVR FVHPEPDHVL RTSLDGTRRC FVNVCSNALV 151 200 ENSP00000298292/1-837 GAPSSRPGSG GDRGAAPGSH WSLPYSLAPG REYAGRSSSR YMVYDVVFHP ENSBTAP00000042390/1-829 GAPSSQPGSG ---SAVSGRQ WSLPYSLAPG REYAWGRGTR YTVYDVVFHP ENSTTRP00000007241/1-823 CAPSSRPGSG ---AAASGSQ WSLPYSLAPG REYAGGRGRR YTVYDVVFHP bmy_06159T0/1-574 CAPSSRPGSR ---GAASGSQ WSLPYSLAPG REYAGGRGSR YTVYDVVFHP BACU015317/1-807 CAPSSRPGSR ---GAASGSQ WSLPYSLAPG REYAGGRGSR YTVYDVVFHP 201 250 ENSP00000298292/1-837 DALALARRHE GFRQMLDATA LEAVEKQFGV KLDRRNAKTL KAKYKGTPEA ENSBTAP00000042390/1-829 DAIALARRHE RFRQMLDATA LEAVEKQFGV KLDRRNAKTL KIKYKGTPDA ENSTTRP00000007241/1-823 DALALARRHE RFRQMLDATA LEAVEKQFGV KLDRRNAKTL KVKYKGTPEA bmy_06159T0/1-574 DALALARRHE RFRQMLDATA LEAVEKQFGV KLDRRNAKIL KVK------- BACU015317/1-807 DALALARRHE RFRQMLDATA LEAI------ ---------L KVKYKGTPEA 251 300 ENSP00000298292/1-837 AVLRTPLPGV IPARPDGEPK GPLPDFPYPY QYPAA----- -PGPRAPSPP ENSBTAP00000042390/1-829 AVLRTPLPGG APARPEGEPE SPFPDFPYPY RYPAAGASAA VPRPQAPSPP ENSTTRP00000007241/1-823 AVLRTPLPGG SPARPEGEPE SPLPDFPYPY RYPEA----- -PRPQAPSHP bmy_06159T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU015317/1-807 AVLRTPLPEG SPARPDGEPE SPLPDFPYPY RYPEAAGSAA IPRPQAPSPP 301 350 ENSP00000298292/1-837 EAALQPAPTE PRYSVVQRHH VDLQDYRCSR DSAPSPVPHE LVITIELPLL ENSBTAP00000042390/1-829 EAVRQPAPTE PRYSVVQRHH VDLQDYRCSR DSAPGTVPQE LVVTIELPLL ENSTTRP00000007241/1-823 EAVLQPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06159T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU015317/1-807 EAVLQPAPTE PSYSVVQRHH VDLQDYRCSR DSAPSTVPQE LVVTIELPLL 351 400 ENSP00000298292/1-837 RSAEQAALEV TRKLLCLDSR KPDYRLRLSL PYPVDDGRGK AQFNKARRQL ENSBTAP00000042390/1-829 RSAEQAALEV TGKLLCLDSR KPDYRLRLSL PYPVDDSRGK AQFNKARRQL ENSTTRP00000007241/1-823 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06159T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU015317/1-807 RSAEQAALEV TGKLLCLDSR KPDYRLRLSL PYPVDDSCGK AQFNKARRQL 401 450 ENSP00000298292/1-837 VVTLPVVLPA ARREPAVAVA AAAPEESADR SGTDGQACAS AREGEAGPAR ENSBTAP00000042390/1-829 VVTLPVAPTA SRPEP----- AASPEEAADP PGTDGAACAS ACRGEAGPAG ENSTTRP00000007241/1-823 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPAG bmy_06159T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU015317/1-807 VVTL------ TRPDP----- AATPEDAADR PGTDGAPCAS AHQGQAGPAG 451 500 ENSP00000298292/1-837 SRAEDGGHDT CVAGAAGSGV TTLGDPEVAP PPAAAGEERV PKPGEQDLSR ENSBTAP00000042390/1-829 VCAGDAISGP SRTRAADAGI TT-------- -PDAPGKERV AKSEERDFGG ENSTTRP00000007241/1-823 CGAE---ADP NRGWTADAGI TT-------- -PDAAGEEHV SAPEER-FSG bmy_06159T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU015317/1-807 GGGADGGSDP SRTGTADAGI TT-------- -PDADGEERV SEPEERDFSG 501 550 ENSP00000298292/1-837 HAGSPPGSVE EPSPGGENSP G--GGGSPCL SSRSLAWGSS AGRESARGDS ENSBTAP00000042390/1-829 QEISTTGTRE EPPSGAGNSP GDRGGGALST SWGDLDAGLS VGSASVRPTL ENSTTRP00000007241/1-823 QERSTTGIRE EPPPGAGNSP GDGGGGAPST SSGDLDRGSS AGKVSARRTL bmy_06159T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU015317/1-807 QERSTAGIRE EPPPEAGNSP GDGGGGAPST SSGDLDRGSS AGRVSARRTL 551 600 ENSP00000298292/1-837 SVETREESEG TGGQRSACAM GGPGTKSGEP LCPPLLCNQD KETLTLLIQV ENSBTAP00000042390/1-829 GVEARETREG TGREPAYRAM GGPGTDRGEA LCPPLQCSQD EESLTLLVQV ENSTTRP00000007241/1-823 GVEALEGREG TRREPADRAM SGPGTDRGEP LCPPLQCNQD EESLTLLIQV bmy_06159T0/1-574 ---------- ---EPADRAM GAPGTDRGEP LCPPLQCNQD EESLTLLIQV BACU015317/1-807 GMEALEAREG TRREPADRAM GAPGTDRGEP LCPPLQCNQD EESLTLLIQV 601 650 ENSP00000298292/1-837 PRIQPQSLQG DLNPLWYKLR FSAQDLV-YS FFLQFAPENK LSTTEPVISI ENSBTAP00000042390/1-829 PWILLQSLQG EVNPLWYKLS FSTQDLVYYS FFLQFTPENK LSTKEPEVSI ENSTTRP00000007241/1-823 PWIQPQSLQG EVTPLWYKLS FSTQDLVYYS FVLQFTPENK LNTKEPVVSI bmy_06159T0/1-574 PRIQPQSLQG EVTPLWYKLS FSTQDLVYYS FFLQFTPGNK LNTKEPVVSI BACU015317/1-807 PRIQPQSLQG EVTPLWYKLS FSTQDLVYYS FFLQFTPGNK LNTKEPVVSI 651 700 ENSP00000298292/1-837 SSNNAVIELA KSPESHGHWR EWYYGVNNDS LEERLFVNEE NVNEFLEEVL ENSBTAP00000042390/1-829 SSNNAVINLA KSPECHGYWR EWYYGLNNYC LEERLFVNED NVNEFLEEVL ENSTTRP00000007241/1-823 SSNNAVIGLA KSPECHGQWR EWYYGLNNDS LEERLFVSEE NVNEFLEEVL bmy_06159T0/1-574 SSNNAVIELA KSPECHGQWR EWYYGLNNDS LEERLFVSEE NVNEFLEEVL BACU015317/1-807 SSNNAVIELA KSPECHGQWR EWYYGLNNDS LEERLFVSEE NVNEFLEEVL 701 750 ENSP00000298292/1-837 SSPFKQSMSL TPPLIEVLQV TDNKIQINAK LQECSNSDQL QGKEERVNEE ENSBTAP00000042390/1-829 SPPFKQTLPL TPPLIEVLQV TDSKIEIHAK LQECSNSEQL HEKEERVHEG ENSTTRP00000007241/1-823 SPPFKQTMPL TPPLIEVLQV TDSKIEIHAK LQECSNSEQL HEKEERVNEG bmy_06159T0/1-574 SPPFKQTMPL TPPLIEVLQV TDSKIEIHAK LQECSNSEQL HEKEERVNEG BACU015317/1-807 SPPFKQIMPL TPPLIEVLQV TDSKIEIHAK LQECSNSEQL HEKEERVNEG 751 800 ENSP00000298292/1-837 SHLTEKEYIE HCNTPTTDSD SSIAVKALQI DSFGLVTCFQ QESLDVSQMI ENSBTAP00000042390/1-829 SPLTEKENTE HATISTTDSA SSVAVTVLEA DRCGSATCLQ QGALDVSQKL ENSTTRP00000007241/1-823 SHLTEKECLQ HATTS-ADSN SSVPVKVLET DSCGSVACLQ QGALDVSQKP bmy_06159T0/1-574 SHLTEKESLE HATTS-ADSH SSVAVKVLET DSCGSVACMQ QGALDVSQKP BACU015317/1-807 SHLTEKESLG HATTS-ADSN SSVAVKVLET DSCGSVACMQ QGALDVAQKP 801 850 ENSP00000298292/1-837 LGKSQQPESK MQSEFIKEKS ATCSNEEKDN LNESVITEEK ETDGDHLSSL ENSBTAP00000042390/1-829 FAESQQPKSE KEREFIKDKS AVYANERKDN LKEPVITEEK ELDGNHPSSL ENSTTRP00000007241/1-823 FAKSQQPESK MEPEFIKDKS AAHSNDEKDN LKEPVITEEK ELDGDHLSSL bmy_06159T0/1-574 SAKSQQPESK MEPEFTKDKS AVHSNDGKDN LKEXVITEEK ELDGDHPSSL BACU015317/1-807 FAKSQQPESK MEPEFTKDKS AVHSNDEKDN LKEPVITEEK ELDGDHPSSL 851 900 ENSP00000298292/1-837 LNKTTVHNIP GFDSIKETNM QDGSVQVIKD HVTNCAFSFQ NSLLYDLD ENSBTAP00000042390/1-829 LNKTAVRDTP GFDHIKETNM QDGSVQIIKD HVTHCSFSFQ NNLLYDLD ENSTTRP00000007241/1-823 LNKTEVHNTP GFDNIKETNM QDGRVQIIKD HVTHCSFSFQ NSLLYDLD bmy_06159T0/1-574 LNKTAVHNTP GFDNIKETNM QDGSVQIIKD HVTHCSFSFQ NSLLYDLD BACU015317/1-807 LNKTAVHNTP GCDNIKETNM QDGSVKIIKD HVTHCSFSFQ NSLLYDLD