KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:53:28 2014  Check: 00 ..

 Name: ENSP00000382783/1-225     Len:    225  Check:  8525  Weight:  1.00
 Name: ENSBTAP00000042425/1-225  Len:    225  Check:  5005  Weight:  1.00
 Name: bmy_17190T0/1-208         Len:    225  Check:  6111  Weight:  1.00
 Name: BACU005048/1-225          Len:    225  Check:  8535  Weight:  1.00

//


                          1                                                   50
ENSP00000382783/1-225     MATHALEIAG LFLGGVGMVG TVAVTVMPQW RVSAFIENNI VVFENFWEGL 
ENSBTAP00000042425/1-225  MATYALQIAG LVLGGVGMVG TVAATVMPQW RVSAFIESNI VVFENLWEGL 
bmy_17190T0/1-208         ---------- -------MVG TVAVTVMPQW RVSAFIGSNI VVFENLWEGL 
BACU005048/1-225          MATYALQIAG LVLGGVGMVG TVAVTVMPQW RVSAFIGSNI VVFENLWEGL 


                          51                                                 100
ENSP00000382783/1-225     WMNCVRQANI RMQCKIYDSL LALSPDLQAA RGLMCAASVM SFLAFMMAIL 
ENSBTAP00000042425/1-225  WMSCMRHANI RMQCKIYDSL LALSPDLQAA RGLMCAASVL AFLAFLTAVL 
bmy_17190T0/1-208         WMNCMRHANI RMQCKIYDSL LALSPDLQAS RGLMCAASAL SFLAFMMAVL 
BACU005048/1-225          WMNCMRHANI RMQCKIYDSL LALSPDLQAS RGLMCAASAL SFLAFMTAVL 


                          101                                                150
ENSP00000382783/1-225     GMKCTRCTGD NEKVKAHILL TAGIIFIITG MVVLIPVSWV ANAIIRDFYN 
ENSBTAP00000042425/1-225  GMKCTRCAGD DDKVKGHILL TAGVIFIITG LVVLIPVSWV ANSIIRDFYN 
bmy_17190T0/1-208         GMKCTRCTGD BEKVKGYILL TAGVVFIVTG LVVLIPVSWV ANSIIRDFYN 
BACU005048/1-225          GMKCTRCTGD DEKVKGYILL TAGVVFIVTG LVVLVPVSWV ANSIIRDFYN 


                          151                                                200
ENSP00000382783/1-225     SIVNVAQKRE LGEALYLGWT TALVLIVGGA LFCCVFCCNE KSSSYRYSIP 
ENSBTAP00000042425/1-225  PIVDIAQKRE LGEALYIGWT TALVLIVGGA LFCCVSCCHE KSSSYRYSIP 
bmy_17190T0/1-208         PIVDIAQKRE LGEALYIGWT TALVLIAGGV LFCCVSCCNE XSSSYRYSIP 
BACU005048/1-225          PIVDIAQKRE LGEALYVGWT TALVLIAGGA LFCCVSCCNE KSSSYRYSIP 


                          201                                                250
ENSP00000382783/1-225     SHRTTQKSYH TGKKSPSVYS RSQYV 
ENSBTAP00000042425/1-225  SHRTTQKSYH AEKKSPSVYS KSQYV 
bmy_17190T0/1-208         SHRTTQKSYH MEKKSPSVYS KSQYV 
BACU005048/1-225          SHRTTQKSYH MEKKSPSVYS KSQYV