KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:33 2014 Check: 00 .. Name: ENSP00000356064/1-1543 Len: 1629 Check: 1720 Weight: 1.00 Name: ENSBTAP00000042471/1-1463 Len: 1629 Check: 47 Weight: 1.00 Name: ENSTTRP00000010730/1-1518 Len: 1629 Check: 4265 Weight: 1.00 Name: bmy_20142T0/1-1246 Len: 1629 Check: 6048 Weight: 1.00 Name: BACU011761/1-1110 Len: 1629 Check: 8594 Weight: 1.00 // 1 50 ENSP00000356064/1-1543 MYAAVEHGPV LCSDSNILCL SWKGRVPKSE KEKPVCRRRY YEEGWLATGN ENSBTAP00000042471/1-1463 MYAAVEHGPV LCSDSNILCL SWKGRVPKSE KEKPVCRRRY YEEGWLATGN ENSTTRP00000010730/1-1518 MYAAVEHGPV LCSDSNILCL SWKGRVPKSE KEKPVCRRRY YEEGWLATGN bmy_20142T0/1-1246 MYAAVEHGPV LCSDSNILCL SWKGRVPKSE KEKPVCRRRY YEEGWLATGN BACU011761/1-1110 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000356064/1-1543 GRGVVGVTFT SSHCRRDRST PQRINFNLRG HNSEVVLVRW NEPYQKLATC ENSBTAP00000042471/1-1463 GRGVVGVTFT SSHCRRDRNT PQRINFNLRG HNSEVVLVRW NEPYQKLATC ENSTTRP00000010730/1-1518 GRGVVGVTFT SSHCRRDRNT PQRINFNLRG HNSEVVLVRW NEPYQKLATC bmy_20142T0/1-1246 GRGVVGVTFT SSHCRRDRNT PQRINFNLRG HNSEVVLVRW NEPYQKLATC BACU011761/1-1110 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000356064/1-1543 DADGGIFVWI QYEGRWSVEL VNDRGAQVSD FTWSHDGTQA LISYRDGFVL ENSBTAP00000042471/1-1463 DADGGIFVWI QYEGRWSVEL VNDRGAQVSD FTWSHDGTQA LISYRDGFVL ENSTTRP00000010730/1-1518 DADGGIFVWI QYEGRWSVEL VNDRGAQVSD FTWSHDGTQA LISYRDGFVL bmy_20142T0/1-1246 DADGGIFVWI QYEGRWSVEL VNDRGAQVSD FTWSHDGTQA LISYRDGFVL BACU011761/1-1110 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000356064/1-1543 VGSVSGQRHW SSEINLESQI TCGIWTPDDQ QVLFGTADGQ VIVMDCHGRM ENSBTAP00000042471/1-1463 VGSVSGQRHW SSEINLESQI TCGIWTPDDQ QVLFGTADGQ VIVMDCHGRM ENSTTRP00000010730/1-1518 VGSVSGQRHW SSEINLESQI TCGIWTPDDQ QVLFGTADGQ VIVMDCHGRM bmy_20142T0/1-1246 VGSVSGQRHW SSEINLESQI TCGIWTPDDQ QVLFGTADGQ VIVMDCHGRM BACU011761/1-1110 ---------- ---------- ---------- ---------- ---MDCHGRM 201 250 ENSP00000356064/1-1543 LAHVLLHESD GVLGMSWNYP IFLVEDSSES DTDSDDYAPP Q--------- ENSBTAP00000042471/1-1463 LAHVLLHESD GILSMSWNYP AFLVEDSSES DTDSDDYSPP Q--------- ENSTTRP00000010730/1-1518 LAHVLLHESD GILSMSWNYP AFLVEDSSES DTDSDDYSPP Q--------- bmy_20142T0/1-1246 LAHVLLHESD GILSMSWNYP AFLVEDSSES DTDSDDYSPP QGLQHAGLDS BACU011761/1-1110 LAHVLLHESD GILSMSWNYP AFLVEDSSES DTDSDDYSPP Q--------- 251 300 ENSP00000356064/1-1543 ---------- ------DGPA AYPIPVQNIK PLLTVSFTSG DISLMNNYDD ENSBTAP00000042471/1-1463 ---------- ------DGPA AYPIPVQNIK PLLTVSFTSG DISLMNSYDD ENSTTRP00000010730/1-1518 ---------- ---------- ---------- --------SG DISLMNXXXX bmy_20142T0/1-1246 GHVLVASFSL GTSVPADGPA AYPIPVQNIK PLLTVSFTSG DISLMNNYDD BACU011761/1-1110 ---------- ------DGPA AYPIPVQNIK PLLTVSFTSG DISLMNNYDD 301 350 ENSP00000356064/1-1543 LSPTVIRSGL K--------- ---------- ---------- ---------- ENSBTAP00000042471/1-1463 LSPTIIQSGL K--------- ---------- ---------- ---------- ENSTTRP00000010730/1-1518 XXXXXXXXXX X--------- ---------- ---------- ---------- bmy_20142T0/1-1246 LSPTVIQSGL KGVILSGVGR LPPASAVGVG RQHLPCLRQQ ESKGPTLVLT BACU011761/1-1110 LSPTVIQSGL K--------- ---------- ---------- ---------- 351 400 ENSP00000356064/1-1543 -------EVV AQWCTQGDLL AVAGMERQTQ LGELPNGPLL KSAMVKFYNV ENSBTAP00000042471/1-1463 -------EVV AQWCTQGDLL AVAGMERPSQ FSDLPNGPLL KSAMVKFYNV ENSTTRP00000010730/1-1518 -------XVV AQWCTQGDLL AVAGMERPTQ LGDLPNGPLL KSAMVKFYNV bmy_20142T0/1-1246 VFLFLISEVV AQWCTQGDLL AVAGMERPTQ LGDLPSGPLL KSAMVKFYNV BACU011761/1-1110 -------EVV VQWCTQGDLL AVAGMERPTQ LGDLPNGPLL KSAMVKFYNV 401 450 ENSP00000356064/1-1543 RGEHIFTLDT LV-------Q RPIISICWGH RDSRLLMASG PALYVVRVEH ENSBTAP00000042471/1-1463 RGEHIFTLDT LV-------Q RPIVSICWGH RDSRLLMASG PALYVVRVEH ENSTTRP00000010730/1-1518 RGEHIFTLDT LV-------Q RPIISICWGH RDSRLLMASG PALYVVRVEH bmy_20142T0/1-1246 RGEHIFTLDT LVQSPFPSLQ RPIISICWGH RDSRLLMASG PALYVVRVEH BACU011761/1-1110 RGEHIFTLDT LV-------Q RPIISICWGH RDSRLLMASG PALYVVRVEH 451 500 ENSP00000356064/1-1543 RVSSLQLLCQ QAIASTLRED KDVSKLTLPP RLCSYLSTAF IPTIKPPIPD ENSBTAP00000042471/1-1463 RVSSLQLLCQ QAIASALRED KDVNKLTLPP RLCSYLSTAF IPTIKPPIPD ENSTTRP00000010730/1-1518 RVSSLQLLCQ QAIASALRED KDVSKLTLPP RLCSYLSTAF IPTIKPPIPD bmy_20142T0/1-1246 RVSSLQLLCQ QAIASALRED KDVSKLTLPP RLCSYLSTAF IPTIKPPIPD BACU011761/1-1110 RVSSLQLLCQ QAVASALRED KDVSKLTLPP RLCSYLSTAF IPTIKPPIPD 501 550 ENSP00000356064/1-1543 PNNMRDFVSY PSAGNERLHC TMKRTEDDPE VGGPCYTLYL EYLGGLVPIL ENSBTAP00000042471/1-1463 PNNMRDFVSY PSAGSERLHC TMKRTEDDPE VGGPCYTLYL EHLGGLVPIL ENSTTRP00000010730/1-1518 PSNMRDFVSY PSTGSERLHC TMKRTEDDPE VGGPCYTLYL EHLGGLVPIL bmy_20142T0/1-1246 PSNMRDFVSY PSTGSERLHC TMKRTEDDPE VGGPCYTLYL EHLGGLVPIL BACU011761/1-1110 PSNMRDFVSY PSTGSERLHC TMKRTEDDPE VGGPCYTLYL EHLGGLVPIL 551 600 ENSP00000356064/1-1543 KGRRISKLRP EFVIMDPRTD SKPDEIYGNS LISTVIDSCN CSDSSDIELS ENSBTAP00000042471/1-1463 KGRRVSKLRP EFVIMDPRTD SRADEIYGNS LISTMIDSCN CSDSSDIELS ENSTTRP00000010730/1-1518 KGRRISKLRP EFVIMDPRTD GRSHEIYGNS LISTMIDSCN CSDSSDIELS bmy_20142T0/1-1246 KGRRISKLRP EFVIMDPRTD GRSDEIYGNS LISTMIDSCN CSDSSDIELS BACU011761/1-1110 KGRRISKLRP EFVIMDPRTD GRSDEVYGNS LISTMIDSCN CSDSSDIELS 601 650 ENSP00000356064/1-1543 DDWAAKKSPK ISRASKSPKL PRISIEARKS PKLPRAAQEL SRSPRLPLRK ENSBTAP00000042471/1-1463 DDWAAKKSPK ISRASKSPKL PRINIEARKS PKLSRAAQEL SRSPRLPMRK ENSTTRP00000010730/1-1518 DDWAAKKSPK ISRASKSPKL P--NIEARKS PKLSRAAQEI SRSPRLPMRK bmy_20142T0/1-1246 DDWTAKKSPK ISRASKSPKL PRINIEARKS PKLSRAAQEI SRSPRLPMRK BACU011761/1-1110 DDWAAKKSPK ISRASKSPKL PRINIEARKS PKLSRAAQEI SRSPRLPMRK 651 700 ENSP00000356064/1-1543 PSVGSPSLTR REFPFEDITQ HNYLAQVTSN IWGTKFKIVG LAAFLPTNLG ENSBTAP00000042471/1-1463 PSIGSPSLAR REFPFEDITQ HNYLAQVTSN IWGTKFKIVG LAAFLPTNLG ENSTTRP00000010730/1-1518 PSIGSPSLTR REFPFEDITQ HNYLAQVTSN IWGTKFKIVG LAAFLPTNLG bmy_20142T0/1-1246 PSIGSPSLTR REFPFEDITQ HNYLAQVTSN IWGTKFKIVG LAAFLPTNLG BACU011761/1-1110 PSIGSPSLTR REFPFEDITQ HNYLAQVTSN IWGTKFKIVG LAAFLPTNLG 701 750 ENSP00000356064/1-1543 AVIYKTSLLH LQPRQMTIYL PEVRKISMDY INLPVFNPNV FSEDEDDLPV ENSBTAP00000042471/1-1463 AVIYKTSLLH LQPRQMTIYL PEVRKISMDY VNLPVFNPNV FSEDEDDLPV ENSTTRP00000010730/1-1518 AVIYKTS-LH LQPRQMTIYL PEVRKISMDF VNLPVFNPNV FSEDEDDLPV bmy_20142T0/1-1246 AVIYKTSLLH LQPRQMTIYL PEVRKISMDF VNLPVFNPNV FSEDEDDLPV BACU011761/1-1110 AVIYKTSLLH LQPRQMTIYL PEVRKISMDF VNLPVFNPNV FSEDEDDLPV 751 800 ENSP00000356064/1-1543 TGASGVPENS PPCTVNIPIA PIHSSAQAMS PTQSIGLVQS LLANQNVQLD ENSBTAP00000042471/1-1463 TGASGVPENN PPCTVNIPIA PIHSSAQAMS PTQSIGLVQS LLANQNVQLD ENSTTRP00000010730/1-1518 TGASGVPENN PPCTVNIPIA PIHSSAQAMS PTQSIGLVQS LLANQNVQLD bmy_20142T0/1-1246 TGASGVPENN PPCTVNIPIA PIHSSAQAMS PTQSIGLVQS LLANQNVQLD BACU011761/1-1110 TGASGVPENN PPCTVNIPIA PIHSSAQAMS PTQSIGLVQS LLANQNVQLD 801 850 ENSP00000356064/1-1543 VLTNQTTAVG TAEHAGDSAT QY------PV SNRYSNPGQV IFGSVEMGRI ENSBTAP00000042471/1-1463 VLTNQTTAVG GAEHASESAA QYPVSSQYPV SSRYSNPGQV IFGGVEMGRG ENSTTRP00000010730/1-1518 VLTNQTTAVG AAEHASDSAA QY------PV ASRYSSPGQV IFGGVEMSRV bmy_20142T0/1-1246 VLTNQTTAVG AAEHASDSAA QY------PV PSRYSSPGQV IFGGVEMSRV BACU011761/1-1110 VLTNQTTAVG AAEHASDSAA QY------PV ASRYSSPGQV IFGGVEMSRI 851 900 ENSP00000356064/1-1543 IQNPPPLSLP PPPQGPMQLS TVGHGDRDHE HLQKSAKALR PTPQLAAEGD ENSBTAP00000042471/1-1463 LPNPPQLSLP PPAQGTIQLS VLDLGDRDHE HLQKPAKALR PVPQLATEGD ENSTTRP00000010730/1-1518 IPNPPQLSLP PPAQGAIQLS VLDHGDRDHE HLQKPAKALR PVPQLATEGD bmy_20142T0/1-1246 IPNPPQLSLP PPAQGAIQLS VLDHGDRDHE HLQKPAKALR P--------- BACU011761/1-1110 IPNPPQLSLP PPAQGAIQLS VLDHGDRDHE HLQKPAKALR PVPQLATEGD 901 950 ENSP00000356064/1-1543 AVVFSAPQEV QVTKINPPPP YPGTIPAAPT TAAPPPPLPP PQPPVDVCLK ENSBTAP00000042471/1-1463 AVVFSAPQEV QVAKMNPPPP YPGTIPAAPT TAAPPPPLPP PQPPVDTCLK ENSTTRP00000010730/1-1518 AVVFSAPQEV QVAKMNPPPP YPGTIPAAPT TAAPPPPPPP PPPPLDTCL- bmy_20142T0/1-1246 ---------- ---------- ---------- ---------- ---------- BACU011761/1-1110 AVVFSAPQE- ---------- ---------- ---------- ---------- 951 1000 ENSP00000356064/1-1543 KGDFSLYPTS VHYQTPLGYE RITTFDSSGN VEEVCRPRTR MLCSQNTYTL ENSBTAP00000042471/1-1463 KGDFSLYPTA AHYQPPLGYE RITTFDSSGN VEEVCRPRTR MLCSQNTYTL ENSTTRP00000010730/1-1518 EGDFSPYPTA AHYQA-LGYE RITTXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20142T0/1-1246 ---------- ---------- ---------- ---------- ---------- BACU011761/1-1110 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000356064/1-1543 PGPGSSATLR LTATEKKVPQ PCSSATLNRL TVPRYSIPTG DPPPYPEIAS ENSBTAP00000042471/1-1463 PGPGSSATLR LTATEKKVPQ PCTSATLNRL TVPRYSIPGR ---------- ENSTTRP00000010730/1-1518 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20142T0/1-1246 ---------- ---------- ---------- ---------- ---------- BACU011761/1-1110 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000356064/1-1543 QLAQGRGAAQ RSDNSLIHAT LRRNNREATL KMAQLADSPR APLQPLAKSK ENSBTAP00000042471/1-1463 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010730/1-1518 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20142T0/1-1246 ---------- ---------- ---------- ---------- ---------- BACU011761/1-1110 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000356064/1-1543 GGPGGVVTQL PARPPPALYT CSQCSGTGP- -SSQPGASLA HTASASPLAS ENSBTAP00000042471/1-1463 ---------- ---------- ------PDP- -GAQPGASLA HAASTSPLTS ENSTTRP00000010730/1-1518 XXXXXXXXXX XARPPPALYT CSQCFGAGPG TGSQPGVGLV HAAGTSPLTS bmy_20142T0/1-1246 ---------- ---------- ---------- ---------- ---------- BACU011761/1-1110 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000356064/1-1543 QSSYSLLSPP DSARDRTDYV NSAFTEDEAL SQHCQLEKPL RHPPLPEAAV ENSBTAP00000042471/1-1463 QSSYNLLGAA EGARERADYV NSAFTEDEAL AQHCPADKPP RHPALGEAAV ENSTTRP00000010730/1-1518 QSSYSLLSAG DGARERADYV NSAFTEDEAL AQHCQAEKPL RHPQLSEAAV bmy_20142T0/1-1246 ---------- ---------- ---------- ---------- ---------- BACU011761/1-1110 -SSYSLLSAG DGARERADYV NSAFTEDEAL AQHCQAEKPL RHPPLSETAV 1201 1250 ENSP00000356064/1-1543 TLKRPPPYQW DPMLGEDVWV PQERTAQTSG PNPLKLSSLM LSQGQHLDVS ENSBTAP00000042471/1-1463 AVKRPPPYQW DPVLGEDVWV PQERTAQSTV PNPLKLPPLV VGPGQHLDVS ENSTTRP00000010730/1-1518 AVKRPPPYQW DPVLGEDVWV PQERTAQTAV PNPLKLSPLM VGQSQHLDVS bmy_20142T0/1-1246 ---------- ---------- ---------- ---------- ---------- BACU011761/1-1110 AVKRPPPYQW EPVLGEDVWV PQERTAQTVV PNPLKLPPLM VGQSQHLDVS 1251 1300 ENSP00000356064/1-1543 RLPFISPKSP ASPTATFQTG YGMGVPYPGS YNNPPLPGVQ APCSPKDALS ENSBTAP00000042471/1-1463 RVPFVSPKVP ASPAATFQPG YGMGVPYSAG CSTSPLPGVQ APCSPKDALA ENSTTRP00000010730/1-1518 RVPFVSPKPP ASPTATFQTG YGMGVPYPGG YNTSALTGVQ APCSPKAALA bmy_20142T0/1-1246 ---------- --------TG YGMGVPYPGG YNTSPLAGVQ APCSPKDALA BACU011761/1-1110 RVPFVSPKPP ASPTATFQTG YGMGVPYPGG YNTSPLAGVQ APCSPKDALA 1301 1350 ENSP00000356064/1-1543 PTQFAQQEPA VVLQPLYPPS LSYCTLPPMY PGSSTCSSLQ LPPVALHPWS ENSBTAP00000042471/1-1463 AAQFAQQEST VVLQPAYPPS LAYCTLPPMY PGSSACSSLQ LPPIALHPWN ENSTTRP00000010730/1-1518 PAQFAQQESA VVLQTAYPPS LSYCPLPPMY PGSSACSSLQ LPPIALHPWN bmy_20142T0/1-1246 PAQFAQQESA VVLQTAYPPG LSYCTLPPMY PGSSACSSLQ LPPIALHPWN BACU011761/1-1110 PAQFAQQESA VVLQTAYPPG LSYCTLPPMY PGSSACSSLQ LPPIALHPWN 1351 1400 ENSP00000356064/1-1543 SYSACPPMQN PQGTLPPKPH LVVEKPLVSP PPADLQSHLG TEVMVETADN ENSBTAP00000042471/1-1463 SYSPCPPVQN PQGTLPPKAH LVVEKPLVSP PPTDLQSHLG TEVMVETADN ENSTTRP00000010730/1-1518 SYSACPPVQN PQGALPPKAH LVVEKPLVSP PPTDLQTHLG TEVMVETADN bmy_20142T0/1-1246 SYSACPPVQN PQGALPSKAH LVVEKPLVSP XPTDLQSHLG TEVMVETADN BACU011761/1-1110 SYSACPPVQN PQGALPPKAH LVVEKPLVSP PPTDLQSHLG TEVMVETADN 1401 1450 ENSP00000356064/1-1543 FQEVLSLTES PVPQRTEKFG KKNRKRLDSR AEEGSVQAIT EGKVKKEART ENSBTAP00000042471/1-1463 FQEVLSLTES PIPQRTEKFG KKNRKRLDSR AEEGNVQAIT EGKVKKEART ENSTTRP00000010730/1-1518 FQEVLSLTES PVPQRTEKFG KKNRKRLDSR AEEGNVQAIT EGKVKKEART bmy_20142T0/1-1246 FQEVLSLTES PVPQRTEKFG KKNRKRLDSR AEEGNVQAIT EGKVKKEART BACU011761/1-1110 FQEVLSLTES PVPQRTEKFG KKNRKRLDSR AEEGNVQAIT EGKVKKEART 1451 1500 ENSP00000356064/1-1543 LSDFNSLISS PHLGREKKKV KSQKDQLKSK KLNKTNEFQD SSESEPELFI ENSBTAP00000042471/1-1463 LSDFNSLISS PRLGREKKKV KSQKDQLKSK KLNKTNEFQD SSESEPELFI ENSTTRP00000010730/1-1518 LSDFNSLISS PRLGREKKKV KSQKDQLKSK KLNKTNEFQD SSESEPELFI bmy_20142T0/1-1246 LSDFNSLISS PRLGREKKKV KSQKDQLKSK KLNKTNEFQD SSESEPELFI BACU011761/1-1110 LSDFNSLISS PRLGREKKKV KSQKDQLKSK KLNKTNEFQD SSESEPELFI 1501 1550 ENSP00000356064/1-1543 SGDELMNQSQ GSRKGWKSKR SPRAAGELEE AKCRRASEKE DGRLGSQGFV ENSBTAP00000042471/1-1463 SGDELMNQSQ GSKKGWKSKR SLRAASELEE FKCRKASEKE DGRLGSQGFV ENSTTRP00000010730/1-1518 SGDELMNQSQ GSKKGWKSKR SLRAASELEE FKCRKASEKE DGRLGSQGFV bmy_20142T0/1-1246 SGDELMNQSQ GSKKGWKSKR NLRAASELEE FKCRKASEKE DGRLGSQGFV BACU011761/1-1110 SGDELMNQSQ GSKKSWKSKR SLRAASELEE FKCRKASEKE DGRLGSQGFV 1551 1600 ENSP00000356064/1-1543 YVMANKQPLW NEATQVYQLD FGGRVTQESA KNFQIELEGR QVMQFGRIDG ENSBTAP00000042471/1-1463 YVMANKQPLW NEATQVYQLD FGGRVTQESA KNFQIELEGR QVMQFGRIDG ENSTTRP00000010730/1-1518 YVMANKQPLW NEATQVYQLD FGGRVTQESA KNFQIELEGR QVMQFGRIDG bmy_20142T0/1-1246 YVMANKQPLW NEATQVYQLD FGGRVTQESA KNFQIELEGR QVMQFGRIDG BACU011761/1-1110 YVMANKQPLW NEATQVYQLD FGGRVTQESA KNFQIELEGR QVMQFGRIDG 1601 1650 ENSP00000356064/1-1543 SAYILDFQYP FSAVQAFAVA LANVTQRLK ENSBTAP00000042471/1-1463 SAYILDFQYP FSAVQAFAVA LANVTQRLK ENSTTRP00000010730/1-1518 NAYILDFQYP FSAVQAFAVA LANVTQRLK bmy_20142T0/1-1246 NAYILDFQYP FSAVQAFAVA LANVTQRLK BACU011761/1-1110 NAYILDFQYP FSAVQAFAVA LANVTQRLK