KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:36 2014 Check: 00 .. Name: ENSP00000370889/1-801 Len: 869 Check: 5225 Weight: 1.00 Name: ENSBTAP00000042504/1-798 Len: 869 Check: 2519 Weight: 1.00 Name: ENSTTRP00000007383/1-707 Len: 869 Check: 4386 Weight: 1.00 Name: bmy_06912T0/1-810 Len: 869 Check: 1428 Weight: 1.00 Name: BACU002568/1-801 Len: 869 Check: 5854 Weight: 1.00 // 1 50 ENSP00000370889/1-801 ---------- ---------- ------MESR AEGGSPAVFD WFFEAACPAS ENSBTAP00000042504/1-798 ---------- ---------- ------MGST AEGGPPALFD WFFEAAYPAS ENSTTRP00000007383/1-707 AGSGPSLHRP PAPLRKGPRR ASPAGTMGST AERGLPALFD WFFEAAYPPS bmy_06912T0/1-810 ---------- ---------- ------MGST AERGLPALFD WFFEAAYPPS BACU002568/1-801 ---------- ---------- ------MGST AERGLPALFD WFFEAAYPPS 51 100 ENSP00000370889/1-801 LQEDPPILRQ FPPDFRDQEA MQMVPKFCFP FDVEREPPSP AVQHFTFALT ENSBTAP00000042504/1-798 LQEDPPILRQ FPPDFQDQES MQMVPKFCFP FDVERETPST AVQHFTFVLT ENSTTRP00000007383/1-707 LQEDPPILRQ FPPDFRDQEA MQMVPKFCFP FDVEREPPST AVQHFTFALT bmy_06912T0/1-810 LQEDPPILRQ FPPDFRDQEA MQMVPKFCFP FDVERESPST AVQHFTFALT BACU002568/1-801 LQEDPPILRQ FPPDFRDQEA MQIVPKFCFP FDVEREPPST AVQHFTFALT 101 150 ENSP00000370889/1-801 DLAGNRRFGF CRLRAGTQSC LCILSHLPWF EVFYKLLNTV GDLLAQDQVT ENSBTAP00000042504/1-798 DLTGTRRFGF CRLRAGALSC LCILSHLPWF EVFYKLLNTV GDLLAQDQVS ENSTTRP00000007383/1-707 DLTGTRRFGF SRLRAGAHSC LCILSHLPWF EVFYKLLNTV GDLLAQDQVS bmy_06912T0/1-810 DLTGTRRFGF CRLRAGAHSC LCILSHLPWF EVFYKLLNTV GDLLAQDQVS BACU002568/1-801 DLTGTRRFGF CRLRAGAHSC LCILSHLPWF EVFYKLLNTV GDLLAQDQVS 151 200 ENSP00000370889/1-801 EAEELLQNLF QQSLSGPQAS VGLELGSGVT VSSGQGIPPP TRGNSKPLSC ENSBTAP00000042504/1-798 EVDELLLNLL QQPLPGTQAS VGLELGSGVR IASAEGLQSP VPGKNMSLSC ENSTTRP00000007383/1-707 EVNELLLHLL QQPLPGTQDS VGLELGSGVM ISSAQGIPSP GPGKSMPLSC bmy_06912T0/1-810 EVDELLLHLL QQPLPGTQDS VGLELGSGVM ISSAQGIPPP GPGKSMPLSC BACU002568/1-801 EVDELLLHLL QQPVPGTQDS VGLELGSGVM ISSAQGIPPP GPGKSMPLSC 201 250 ENSP00000370889/1-801 FVAPDSGRLP SIPENRNLTE LVVAVTDENI VGLFAALLAE RRVLLTASKL ENSBTAP00000042504/1-798 FVAPDSSRLP SIPENRNLTE LVVAVTDENI VGLFAALLAE RRVLLTSSKL ENSTTRP00000007383/1-707 FVAPDSGRLP SIPENRNLTE LVVAVTDDNI VGLFAALLAE RRVLLTSRKL bmy_06912T0/1-810 FVAPDSGRLP SIPENRNLTE LVVAVTDDNI VGLFAALLAE RRVLLTSRKL BACU002568/1-801 FVAPDSGRLP SIPENRNLTE LVVAVTDDNI VALFAALLAE RRVLLTSRKL 251 300 ENSP00000370889/1-801 STLTSCVHAS CALLYPMRWE HVLIPTLPPH LLDYCCAPMP YLIGVHASLA ENSBTAP00000042504/1-798 STLTSCVHAS CALLYPMHWE HVLIPTLPPH LLDYCCAPMP YLIGVHASLA ENSTTRP00000007383/1-707 STXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSLA bmy_06912T0/1-810 STLTSCVHAS CALLYPMRWE HVLIPTLPPH LLDYCCAPMP YLIGVHASLA BACU002568/1-801 STLTSCVHAS CALLYPMRWE HVLIPTLPPH LLDYCCAPMP YLIGVHASLA 301 350 ENSP00000370889/1-801 ERVREKALED VVVLNVDANT LETTFNDVQA LPPDVVSLLR LRLRKVALAP ENSBTAP00000042504/1-798 ERVREKALED VVILNVDSNT LETPFDDVQA LPPDVVSLLR LRLRKVALAP ENSTTRP00000007383/1-707 ERVREKALED VVMMNVDSNT -ETPFDDVQA LPPDVVSLLR LRLRKVALAP bmy_06912T0/1-810 ERVREKALED VVMMNVDSNT LETPFDDVQA LPPDVVSLLR LRLRKVALAP BACU002568/1-801 ERVREKALED VVMMNVDSNT LETPFDDVQA LPPDVVSLLR LRLRKVALAP 351 400 ENSP00000370889/1-801 GEGVSRLFLK AQALLFGGYR DALVCSPGQP VTFSEEVFLA QKPGAPLQAF ENSBTAP00000042504/1-798 GEGVSRLFLK AQALLFGGYR DALVCSPGQP VTFSEEAFLA QKPGAPLQAF ENSTTRP00000007383/1-707 GEGVSRLFLK AQALLFGGYR DALVCGPGQP VTFSEEAFLA QKPGAPLQAF bmy_06912T0/1-810 GEGVSRLFLK AQALLFGGYR DALVCGPGQP VTFSEEAFLA QKPGAPLQAF BACU002568/1-801 GEGVSRLFLK AQALLFGGYR DALVCGPGQP VTFSEEAFLA QKPGAPLQAF 401 450 ENSP00000370889/1-801 HRRAVHLQLF KQFIEARLEK LNKGEGFSDQ FEQEITGCGA SSGALRSYQL ENSBTAP00000042504/1-798 HRRAVHLQLF KQFIEGRLEK LNTGEGFSDL FEQEITCSGA SSGTLRSYQL ENSTTRP00000007383/1-707 HRRAVHLQLF KQFIEGRLEK LNRGEGFSDL FEQEITCSGA SSGTLRSYQL bmy_06912T0/1-810 HRRAVHLQLF KQFIEGRLEK LNMGEGFSDL FEQEITCSGA SSGTLRSYQL BACU002568/1-801 HRRAVHLQLF KQFIEGRLEK LNTGEGFSDL FEQEITCSGA SSGTLRSYQL 451 500 ENSP00000370889/1-801 WADNLKKGGG ALLHSVKAKT QPAVKNMYRS AKSGLKGVQS LLMYKDGDSV ENSBTAP00000042504/1-798 WADNLKKGGG ALLHSVKAKT QPAVRNMYRS AKSGLKGMQS LLMYKEGDSG ENSTTRP00000007383/1-707 WADNLKKGGG ALLHSVKAKT QPAVRNMYRS AKSGLKGVQS LLTYKDGDSG bmy_06912T0/1-810 WADNLK---- ---------- ---------- AKSGLKGVQS LLMYKDGDSG BACU002568/1-801 WADNLKKGGG ALLHSVKAKT QPAVRNMYRS AKSGLRGVQS LLMYKDGDSG 501 550 ENSP00000370889/1-801 LQRGGSLRAP ALPSRSDRLQ QRLPITQHFG KNRPL----R PSRRRQLEEG ENSBTAP00000042504/1-798 LQRGGSLRAP SLTSRSDRLQ QRLPITQHFG QNRPLRPRSR PSRRLRLEEK ENSTTRP00000007383/1-707 LQRGGSLRAP SLTSRSDCLQ QRLPITQHFG QNRPL----R PSRRLQREER bmy_06912T0/1-810 LQRGGSLRAP SLTSRSDCLQ QRLPITQHFG QNRPL----R PSRRLWREER BACU002568/1-801 LQRGGSLRAP SLTSRSDCLQ QRLPITQHFG QNRPL----R PSRRLRREER 551 600 ENSP00000370889/1-801 TSEPPGAGTP PLSPEDEGCP WAEEALDSSF LGSGEELDLL SEILDSLSMG ENSBTAP00000042504/1-798 PSESLEERTP SLSPEDAQDP WAEEALDGSF LGSGEELDLL SEILDSLSTR ENSTTRP00000007383/1-707 PSESLGEETP SLSPEDAQGP LAEEALDGSF LGSGEELDLL SEILDSLSVT bmy_06912T0/1-810 PSKSLGEGTP SLSPEDAQEP LAEEALDGSF LGSGEELDLL SEILDSLSMR BACU002568/1-801 PSESLGEGTP SLSPEDAQEP LAEEALDGSF LGSGEELDLL SEILDSLSMR 601 650 ENSP00000370889/1-801 AKSAGSLRPS QSLDCCHRGD LDSCFSL--- ---------- ---------- ENSBTAP00000042504/1-798 ATRTGSLRPS QSLDCCHRED LDSCLSL--- ---------- ---------- ENSTTRP00000007383/1-707 ATRNSSLRPS QSLDCCH--- -----SL--- ---------- ---------- bmy_06912T0/1-810 AIRNSSLRPS QSLDCCHRGD LDSCLSLVRA PQTFPICSSN LPAPPSFKGQ BACU002568/1-801 DTRNSSLRPS QSLDCCHRGD LDSCLSL--- ---------- ---------- 651 700 ENSP00000370889/1-801 ---------- PNIP---RWQ PDDKKLPEPE PQPLS--LPS LQNASSLDAT ENSBTAP00000042504/1-798 ---------- PDIPGRSSWQ ADDDKPPEPQ HLS----LLP LHTPQPLGAT ENSTTRP00000007383/1-707 ---------- PDIPGRWRWQ ADDEKPPGPQ PLSLSVGLPP LHTPQPSDAT bmy_06912T0/1-810 QRAHLPIPTQ PDIPGRSRWQ ADDEKPPGPQ PLSLSVGLPP LHTPQPSDAT BACU002568/1-801 ---------- PDIPGRSRWQ ADDEKPPGPQ PLSLSVGLPP LHTPQPSDAT 701 750 ENSP00000370889/1-801 SSSKDSRSQL IPSESDQEVT SPSQSSTASA DPSIWGDPKP SPLTEPLILH ENSBTAP00000042504/1-798 SSRKHPTCQL -PSETGPEIE SPSQSLTASA DPSSKGDPGS SP-TEPQPPH ENSTTRP00000007383/1-707 SASEHPTSQL -PSEASPEII SPSQSSTASA DPSSKGDPSS SL-TDPQPLR bmy_06912T0/1-810 SSSKHPTSQL -PSEASPEII SPSQSSTASA DPSSKGDPSS SL-TEPQPLC BACU002568/1-801 SSSKHPTSQL -PSEASPEII SPSQSSTASA DPSSKGDPSS SL-TEPQPLR 751 800 ENSP00000370889/1-801 LTPSHKAAED STAQENPTPW LSTAPTEPSP PESPQILAPT KPNFDIAWTS ENSBTAP00000042504/1-798 FSPPHEATED PTAQEDPCSQ LLAAPSQPSP PESPR----P EPNLGVTWTS ENSTTRP00000007383/1-707 LSPPH----- ---------- ---------- ---------- ---------- bmy_06912T0/1-810 LSPPHEATED PTAQESPCSQ LSTA---PSP RESRQLLTPT KPNSDITWAS BACU002568/1-801 LSSPHEATED PTAQESPCTQ LSTA---PSP RESPQLLTPT KPNSDITWAS 801 850 ENSP00000370889/1-801 QPLDPSSDPS SLEDPRARPP KALLAERAHL QPREEPGALN SPATPTSNCQ ENSBTAP00000042504/1-798 QALDSVSDPG SSENPGASPS EGLLA--VHL QPLEEPEAPR SPAAPASNWQ ENSTTRP00000007383/1-707 ---------- ---------- ---------- ---------- ---------- bmy_06912T0/1-810 QVLDSFSDPG SPESPRAQPS EVLLPERTHL QPHEEPGAPR PPDPPASNWE BACU002568/1-801 QVLDSFSDPG SPESPRAQPS EVLLPEHTHL QPHEEPGAPR PPEPPASNCE 851 900 ENSP00000370889/1-801 KSQPSSRPRV ADLKKCFEG ENSBTAP00000042504/1-798 EPQARSGPRV AELKKCFEG ENSTTRP00000007383/1-707 ---------- --------- bmy_06912T0/1-810 ELQARSRPRV AELKKCFEG BACU002568/1-801 ELQARSRPRV AELKKCFEG