KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:40 2014 Check: 00 .. Name: ENSTTRP00000003759/1-935 Len: 997 Check: 1089 Weight: 1.00 Name: ENSBTAP00000042548/1-920 Len: 997 Check: 119 Weight: 1.00 Name: ENSP00000442053/1-960 Len: 997 Check: 6839 Weight: 1.00 Name: bmy_01423T0/1-739 Len: 997 Check: 3949 Weight: 1.00 Name: BACU003431/1-897 Len: 997 Check: 8721 Weight: 1.00 // 1 50 ENSTTRP00000003759/1-935 MSRLIVKNLP DGMKEERFRQ LFTAFGTLTD CSLKFTKGGK FRRFGFIGFK ENSBTAP00000042548/1-920 MSRLIVKNLP NGMKEERFRQ LFTAFGTLTD CSLKFTKDGK FRKFGFIGFK ENSP00000442053/1-960 MSRLIVKNLP NGMKEERFRQ LFAAFGTLTD CSLKFTKDGK FRKFGFIGFK bmy_01423T0/1-739 ---------- -MMKEGRFRQ LFTAFGTLTD CSLKFTKDGK FRKFGFIGFK BACU003431/1-897 ---------- -MMKEERFRQ LFTAFGTLTD CSLKFTKDGK FRKFGFIGFK 51 100 ENSTTRP00000003759/1-935 SEEEAQTALN HFNKSFIDMS RITVEFCKSF GDPTKPRAWS KHAQKTSQCK ENSBTAP00000042548/1-920 SEEEAQTALN HFNKSFIDTS RITVEFCKAF GDPTKPRAWS KHAQKSSQSK ENSP00000442053/1-960 SEEEAQKAQK HFNKSFIDTS RITVEFCKSF GDPAKPRAWS KHAQKPSQPK bmy_01423T0/1-739 SEEDAQTALN HFNKSFIDMS RITVEFCKSF GDPTKPRAWS KHAQKTSQSK BACU003431/1-897 SEEEAQTALN HFNKSFIDMS RITVEFCKPF GDPTKPRAWS KHAQKASQSK 101 150 ENSTTRP00000003759/1-935 PPLKDKDSIS PETKKDDKKK KVASELEKLR EDNEFQEFLS VHQKRTQVAT ENSBTAP00000042548/1-920 PPPKDKDAIS TEPKKDDKKK KAAGELEKLK DDNEFQEFLS VHQKRTQVAT ENSP00000442053/1-960 QPPK--DSTT PEIKKDEKKK KVAGQLEKLK EDTEFQEFLS VHQRRAQAAT bmy_01423T0/1-739 PPPKDKDPIS PETKKDDKKK KVAGELEKLR EDNEFQEFLS VHQKRTQAAT BACU003431/1-897 PPPKDRDSIS PETKKDDKKK KVAGELEKLR EDNEFQEFLS VHQKRAQAAT 151 200 ENSTTRP00000003759/1-935 WANDALDVEP SKGKNNLAED YLNFDSDSGQ ESEEEGAGEA PEEEAS-L-- ENSBTAP00000042548/1-920 WANDALDAEP SKGKSKPAND YLNFDSDSGQ ESEEEEDGEN SEEEEDGLKP ENSP00000442053/1-960 WANDGLDAEP SKGKSKPASD YLNFDSDSGQ ESEEEGAGED LEEEAS-L-- bmy_01423T0/1-739 WANDALDVEP SKGKNNLAND YLNFDSDSGQ ESEEEGAGEA PEEEDSGL-- BACU003431/1-897 WANDALDVEP SKGKNNLAND YLNFDSDSGQ ESEEEGAGEA PEEEDSGL-- 201 250 ENSTTRP00000003759/1-935 ----EPKAAT RKELSDMDYL KSKVVEAESP SS---EESED EAVNCEEGSE ENSBTAP00000042548/1-920 KEPKEPKAAV QKELSDMDYL KSKVVAAESP SS---EESED EAVNCEEGSE ENSP00000442053/1-960 ----EPKAAV QKELSDMDYL KSKMVKAGSS SSSEEEESED EAVHCDEGSE bmy_01423T0/1-739 ----EPKAAV RKELSDMDYL KSKVVEAESP SS---GESED EAVNCEEGSE BACU003431/1-897 ----EPKAAV RKELSDMDYL KSKVVEAESP SS---GESED EAVNCEEGSE 251 300 ENSTTRP00000003759/1-935 AEEEGSCTPA AQQDREA--- ---------- -----ARAET ETPANQKERT ENSBTAP00000042548/1-920 SEEEGSFAAP AQQDREA--- ---------- ---------- ---------- ENSP00000442053/1-960 AEEEDSSATP VLQERDSKGA GQEQGMPAGK KRPPEARAET EKPANQKEPT bmy_01423T0/1-739 AEEEGSCTTP AQQDREA--- ---------- -----ARAET EKPANQEERT BACU003431/1-897 AEEEGSCTTP AQQDREA--- ---------- -----ARAET EKPGSQKEPT 301 350 ENSTTRP00000003759/1-935 TTHTVKLRGA PFNVTEKNVM EFLAPLKPVA IRIVRNAHGN KTXXXXXXXX ENSBTAP00000042548/1-920 ---------A P---AKKNVM EFLAPLKPVA IRIVRNAHGN KTGYVFVDFS ENSP00000442053/1-960 TCHTVKLRGA PFNVTEKNVM EFLAPLKPVA IRIVRNAHGN KTGYIFVDFS bmy_01423T0/1-739 ITHTVKLRGA PFNVTEKNVM EFLAPLKPVA IRIVRNAHGN KT-------- BACU003431/1-897 ITHTVKLRGA PFNVTEKNVM EFLAPLKPVA IRIVRNAHGN KTGYVFVDFS 351 400 ENSTTRP00000003759/1-935 XXXXXXXXXX XXXXXXXGRY IEVFREKNVP AAKVPPENSA KPWQGRTLGE ENSBTAP00000042548/1-920 SEEEVRKALK CNREYMGGRY IEVFRERNIP VAKAPLKNGA KPWQGRTLGE ENSP00000442053/1-960 NEEEVKQALK CNREYMGGRY IEVFREKNVP TTKGAPKNTT KSWQGRILGE bmy_01423T0/1-739 ---------- ------GGRY IEVFREKNFP AAKAPPENSA KPWQGRTLGE BACU003431/1-897 SEEEVRKALK CNREYMGGRY IEVFREKNVP AAKAPPENSA KPWQGRTLGE 401 450 ENSTTRP00000003759/1-935 HEEEEDLADS GRLFVRNLPY ---------- ------TSSE EDLEK----- ENSBTAP00000042548/1-920 HEEEEDLADS GRLFVRNLPY ---------- ------TSSE EDLEK----- ENSP00000442053/1-960 NEEEEDLAES GRLFVRNLPY ---------- ------TSTE EDLEK----- bmy_01423T0/1-739 HEEEEDLADS GRLFAGALVY VAGPGRPGEG VVNRLEVSIR EDKAREGGLG BACU003431/1-897 HEEEEDLADS GRLFVRNLPY ---------- ------TSSE EDLEK----- 451 500 ENSTTRP00000003759/1-935 ---LFSKYGP LSELHYPIDS LTKKPKGFAF VTFMFPEHAV KAYAEVDGQV ENSBTAP00000042548/1-920 ---LFSRYGP VSELHYPIDS LTKKPKGFAF VTFMFPEHAV KAYAEVDGQV ENSP00000442053/1-960 ---LFSKYGP LSELHYPIDS LTKKPKGFAF ITFMFPEHAV KAYSEVDGQV bmy_01423T0/1-739 HTLVFRVEGP LSELHYPIDS LTKKPKGFAF VTFMFPEHAV KAYAEVDGQV BACU003431/1-897 ---LFSKYGP LSELHYPIDS LTKKPKGFAF VTFMFPEHAV KAYAEVDGQV 501 550 ENSTTRP00000003759/1-935 FQGRMLHVLP STIKKEASED ADAPGSSSYK KKKESKDKAN SSXXXXXXXX ENSBTAP00000042548/1-920 FQGRMLHVLP STIKKEASED ANAPESSSYK KKKESKDKAN SSSSHNWNTL ENSP00000442053/1-960 FQGRMLHVLP STIKKEASED ASALGSSSYK KKKEAQDKAN SASSHNWNTL bmy_01423T0/1-739 FQGRMLHVLP STIKKEASED ADAPGSSSYK KKKESKDKAN SSSSHNWNTL BACU003431/1-897 FQGRMLHVLP STIKKEASED ADAPGSSSYK KKKESKDKAN SSSCHNWNTL 551 600 ENSTTRP00000003759/1-935 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000042548/1-920 FMGPNAVADA IAQKYSATKS QVFDHETKGS VAVRVALGET QLVQEVRRFL ENSP00000442053/1-960 FMGPNAVADA IAQKYNATKS QVFDHETKGS VAVRVALGET QLVQEVRRFL bmy_01423T0/1-739 FMGPNAVADA IAQKYSATKS QVFDHETKGS MAVRVALGET QLVQEVRRFL BACU003431/1-897 FMGPNAVADA IAQKYSATKS QVFDHETKGS VAVRVALGET QLVQEVRRFL 601 650 ENSTTRP00000003759/1-935 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000042548/1-920 LDNGVCLDSF SQGGSGLSKT LTLQLSIKAD SLPAEPQGGF TRLGSPGVVL ENSP00000442053/1-960 IDNGVSLDSF SQAAAERSKT VILVKNLPAG TLAAQLQETF GHFGSLGRVL bmy_01423T0/1-739 LDNGVSLDSF SQAAAERSKT VILVKNLPAG TLAAELQETF GRFGSLGRVL BACU003431/1-897 LDNGVSLDSF SQAAAERSKT VILVKNLPAG TLAAELQETF GRFGSLGRVL 651 700 ENSTTRP00000003759/1-935 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF HHVPLYLEWA PVGIFSSPAP ENSBTAP00000042548/1-920 IPRWGITAVV CSLPPVPPGK PFVHVCTSTF HHVPLYLEWA PMGVFSSPIP ENSP00000442053/1-960 LPEGGITAIV EFLEPLEARK AFRHLAYSKF HHVPLYLEWA PVGVFSSTAP bmy_01423T0/1-739 LPEGGVTAIV EFLEPLEARK AFRHLAYSKF HHVPLYLEWA PVGIFSSPAP BACU003431/1-897 LPEGGVTAIV EFLEPLEARK AFRHLAYSKF HHVPLYLEWA PVGIFSSPAP 701 750 ENSTTRP00000003759/1-935 QKKELQDAPA EPAGKDRMEP ETV-DGETPE GEKLTEGAAH DTSAEV---- ENSBTAP00000042548/1-920 QKEEPQDAPA EPAGTDRMEP ET--DGETPE GEQPTDRAAH DASAKMEEEE ENSP00000442053/1-960 QKKKLQDTPS EPMEKDPAEP ETVPDGETPE DENPTEEGAD NSSAKM-EEE bmy_01423T0/1-739 QKKEPGDAPA EPAGKDRMEP ET--DGETPE GEKPTEGTAH DTSAKMEEEE BACU003431/1-897 QKKEPRDAPA EPAGKDRMEP ET--DGETPE GEKPTEGTAH DTSAKM-EEE 751 800 ENSTTRP00000003759/1-935 --EEEENEES LPGCTLFIKN LHFDTTEETL KGGFSKVGVV KSCSISKKKN ENSBTAP00000042548/1-920 EEEEEEEEES LPGCTLFIKN LNFDTTEETL KGVFSKVGAV KSCSISKKKN ENSP00000442053/1-960 EEEEEEEEES LPGCTLFIKN LNFDTTEEKL KEVFSKVGTV KSCSISKKKN bmy_01423T0/1-739 EEEEEEEEES LPGCTLFIKN LHFDTTEETL KGVSDR---- -----SARRE BACU003431/1-897 EEEEEEEEES LPGCTLFIKN LHFDTTEETL KGVFSKVGVV KRCSISKKKN 801 850 ENSTTRP00000003759/1-935 KAGALLSMGF GFVEYRKPEQ AQKALKQLQG HVVDGHKLEV RISERATKPA ENSBTAP00000042548/1-920 KAGALLSMGF GFVEYRKPEQ AQKALKQLQG HVVDGHKLEV RISERATKSA ENSP00000442053/1-960 KAGVLLSMGF GFVEYRKPEQ AQKALKQLQG HVVDGHKLEV RISERATKPA bmy_01423T0/1-739 RAGV------ ---------- ---------- ---------- ---GRAGDPA BACU003431/1-897 KAGVLLSMGF GFVEYRKPDQ AQKALKQLQG HVMDGHKLEV RISERATKPA 851 900 ENSTTRP00000003759/1-935 LTSARRKQEP RKQTTSKILV RNIPFQADSR EIRELFSTFG ELKTVRLPKK ENSBTAP00000042548/1-920 LNSGRHKHSP RRQTDTKIWV RVCPFQGDSR ELKEIFNTFG ELKTVRLPKK ENSP00000442053/1-960 VTLARKKQVP RKQTTSKILV RNIPFQAHSR EIRELFSTFG ELKTVRLPKK bmy_01423T0/1-739 C--------- ---------- ---------- ---------- ---------- BACU003431/1-897 LTSARKKQVP RKQTTSKILV RNIPFQADSR EIRELFSC-- ---------- 901 950 ENSTTRP00000003759/1-935 MTGMGSHRGF GFVDFLTKQD AKRAFNALCH STHLYGRRLV LEWADSEVSL ENSBTAP00000042548/1-920 LTGTGTHRGF GFVDFLTKQD AKRAFNALCH STHLYGRRLV LEWADSEVSL ENSP00000442053/1-960 MTGTGTHRGF GFVDFLTKQD AKRAFNALCH STHLYGRRLV LEWADSEVTL bmy_01423T0/1-739 ---------- ---------- ---------- ---------- ---------- BACU003431/1-897 ---------- --VDVSCSSG IALSVSLMGM FSAMRGR--- --------TV 951 1000 ENSTTRP00000003759/1-935 QALRRKTAER FHEPPKKKRS VVLDEIL--- EQLEDSEDGG DEQTLQP ENSBTAP00000042548/1-920 PALRRKTAEH FHEPPKKKRS VVLDEIL--- EQLEDSEDDG EAQTLQL ENSP00000442053/1-960 QALRRKTAAH FHEPPKKKRS VVLDEIL--- EQLEGSDSDS EEQTLQL bmy_01423T0/1-739 ---------- ---------- ---------- ---------- ------- BACU003431/1-897 DSTPDVCTAL TSGPCRGLKC LCAHDFICFF PHKPGEQPPM RQMAAQP