KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:40 2014 Check: 00 .. Name: ENSBTAP00000042556/1-216 Len: 332 Check: 9441 Weight: 1.00 Name: ENSP00000469049/1-240 Len: 332 Check: 6828 Weight: 1.00 Name: ENSTTRP00000005565/1-241 Len: 332 Check: 8458 Weight: 1.00 Name: bmy_21811T0/1-241 Len: 332 Check: 6283 Weight: 1.00 Name: BACU002564/1-331 Len: 332 Check: 6226 Weight: 1.00 // 1 50 ENSBTAP00000042556/1-216 MEETVARPSV FVVDGQTDIP FRRLGHSRRR QPCSAAQLGL GLMLLLLVAG ENSP00000469049/1-240 MEESVVRPSV FVVDGQTDIP FTRLGRSHRR QSCSVARVGL GLLLLLMGAG ENSTTRP00000005565/1-241 MEETVVRPSV FMVDGQTDIP FTRLGHRRRR QPCSAARLGL GLLLLLLTTG bmy_21811T0/1-241 MEETVVRPSV FVVDGQTDIP FTRLGRSRRR QPCSAARLGL GLLLLLLATG BACU002564/1-331 MEETVVRPSV FVVDGQTDIP FTRLGRSRRR QPCSAARLGL GLLLLLLATG 51 100 ENSBTAP00000042556/1-216 LAVQGWFLLQ LHWRLEE--- ---------- ---------- ---------- ENSP00000469049/1-240 LAVQGWFLLQ LHWRLGEMVT RLP------- ---------- ---------- ENSTTRP00000005565/1-241 VAVQGWFLLQ LHWRLEVMAA PLQ------- ---------- ---------- bmy_21811T0/1-241 VAVQGWFLLQ LHWRLEVMAA PLQ------- ---------- ---------- BACU002564/1-331 VAVQGWFLLQ LHWRLEVMAT SLQVLSAHGW TCAAVLHPCT HTAMYSPVYS 101 150 ENSBTAP00000042556/1-216 ---------- ---------- ---------- ---------- ---------- ENSP00000469049/1-240 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005565/1-241 ---------- ---------- ---------- ---------- ---------- bmy_21811T0/1-241 ---------- ---------- ---------- ---------- ---------- BACU002564/1-331 PCVDVMCLFL RLRVRRPTWL QKPRNPRTCV HVCLVSVSHK CPGLCPCVHI 151 200 ENSBTAP00000042556/1-216 ---------- ---------- --LLQEQKPK QDKPAAHLTG ADFSLTSREG ENSP00000469049/1-240 ---------- ---DGPAGSW EQLIQERRSH EVNPAAHLTG ANSSLTGSGG ENSTTRP00000005565/1-241 ---------- ---DRGAGSW DQLVQDRRPQ RANPTAHLTG ANSSLTGSGG bmy_21811T0/1-241 ---------- ---DRGAGSR DHLVQDRRPQ QANPAAHLTG ANSSLTGSGG BACU002564/1-331 HVLAFMSKCP AIQDRGAGPR DLLVQDRRPQ QANPAAHLTG ANSSLTGSGG 201 250 ENSBTAP00000042556/1-216 PLRWETKLGL AFLRGLSYRD GALVVAQAGY YYIYSK---- ------GLTG ENSP00000469049/1-240 PLLWETQLGL AFLRGLSYHD GALVVTKAGY YYIYSKVQLG GVGCPLGLAS ENSTTRP00000005565/1-241 PLLWETKLGL AFLRGLTYRD GALVIAQAGY YYIYSKVQLG GVGCPQRLTG bmy_21811T0/1-241 PLLWETKLGL AFLRGLTYRD GALVIAQAGY YYIYSKVQLG GVGCAQGLTG BACU002564/1-331 PLLWETKLGL AFLRGLTYRD GALVIAQAGY YYIYSKVQLG GVGCPQGLTG 251 300 ENSBTAP00000042556/1-216 CLPITHGLYK RTASYPEEVE LLVNRRSRCG RA-DGSQVWW DSSFLGGVVH ENSP00000469049/1-240 T--ITHGLYK RTPRYPEELE LLVSQQSPCG RATSSSRVWW DSSFLGGVVH ENSTTRP00000005565/1-241 GLPITHGLYK RTARYPEELE LLVSRRSPCG RA-GSPRVWW DSSFLGGVVH bmy_21811T0/1-241 SLPITHGLYK RTARYPEELE LLVSRRSPCG RA-SSPQVWW DSSFLGGVIH BACU002564/1-331 SLPITHGLYK RTARYPEELE LLVSRQSPCG RA-SSPQVWW DSSFLGGVVH 301 350 ENSBTAP00000042556/1-216 LDVGDEVVVR MPGERVIQVH DGTRSYFGAF MV ENSP00000469049/1-240 LEAGEKVVVR VLDERLVRLR DGTRSYFGAF MV ENSTTRP00000005565/1-241 LDAGEEVVVR VPDESLVRVR DGTRSYFGAF MV bmy_21811T0/1-241 LDAGEEVVVR VPHESLVRVR DGTRSYFGAF MV BACU002564/1-331 LDAGEEVVVR VPDESLVRVR DGTRSYFGAF MV