KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:41 2014 Check: 00 .. Name: ENSTTRP00000010476/1-1078 Len: 1148 Check: 4989 Weight: 1.00 Name: ENSP00000420387/1-1134 Len: 1148 Check: 1214 Weight: 1.00 Name: ENSBTAP00000042566/1-1133 Len: 1148 Check: 8919 Weight: 1.00 Name: bmy_15912T0/1-795 Len: 1148 Check: 2305 Weight: 1.00 Name: BACU017402/1-602 Len: 1148 Check: 1728 Weight: 1.00 // 1 50 ENSTTRP00000010476/1-1078 ---------- ---CAGEEDC VDSRTVYVGH REPPPGAEAY IPHRCPDNRI ENSP00000420387/1-1134 MDCSLVRTLV HRYCAGEENW VDSRTIYVGH REPPPGAEAY IPQRYPDNRI ENSBTAP00000042566/1-1133 -PAHADGSVS HPQCAGEEDW VDSRTVYVGH REPPPGAEAY IPQRYPDNRI bmy_15912T0/1-795 ---------- ---------- ---------- ---------- ---------- BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010476/1-1078 VSSKYTFWNF IPKNLFEQFR RIANFYFLII FLVQLIIDTP TSPVTSGLPL ENSP00000420387/1-1134 VSSKYTFWNF IPKNLFEQFR RVANFYFLII FLVQLIIDTP TSPVTSGLPL ENSBTAP00000042566/1-1133 VSAKYTFWNF IPKNLFEQFR RIANFYFLII FLVQLIIDTP TSPVTSGLPL bmy_15912T0/1-795 ---------- ---------- ---------- ---------- ---------- BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010476/1-1078 FFVITVTAIK QGYEDWLRHK ADSAVNQCPV HFVQHGRLVR KQSRKLRVGD ENSP00000420387/1-1134 FFVITVTAIK QGYEDWLRHK ADNAMNQCPV HFIQHGKLVR KQSRKLRVGD ENSBTAP00000042566/1-1133 FFVITVTAIK QGYEDWLRHK ADNAMNQCPV HFVQHGRLVR KQSRKLRVGD bmy_15912T0/1-795 ---------- ---------- ---------- ---------- ---------- BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000010476/1-1078 IVMVKEDETF PCDLIFLSSS RADGTCHVTT ASLDGESSHK THYAVQDTKG ENSP00000420387/1-1134 IVMVKEDETF PCDLIFLSSN RGDGTCHVTT ASLDGESSHK THYAVQDTKG ENSBTAP00000042566/1-1133 IVMVKEDETF PCDLIFLSSS RADGTCHVTT ASLDGESSHK THYAVQDTKG bmy_15912T0/1-795 ---------- ---------- ---------- ---------- ---------- BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000010476/1-1078 FHTEEDIDSL HATIECERPQ PDLYKFVGRI NVYSDLNDPV VRPLGSENLL ENSP00000420387/1-1134 FHTEEDIGGL HATIECEQPQ PDLYKFVGRI NVYSDLNDPV VRPLGSENLL ENSBTAP00000042566/1-1133 FHSEEDIDSL HATIECEQPQ PDLYKFVGRI NVYNDQNDPV VRSLGSENLL bmy_15912T0/1-795 ---------- ---------- ---------- ---------- ---------- BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000010476/1-1078 LRGAALKNTE KIFGVAVYTG METKMALNYQ SKSQKRSAVE KSMNVFLIVY ENSP00000420387/1-1134 LRGATLKNTE KIFGVAIYTG METKMALNYQ SKSQKRSAVE KSMNAFLIVY ENSBTAP00000042566/1-1133 LRGATLKNTE KIFGVAIYTG METKMALNYQ SKSQKRSAVE KSMNVFLVVY bmy_15912T0/1-795 ---------- ---------- ---------- ---------- ---------- BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000010476/1-1078 LCILISKALI NTVMKYVWQS EPFRDEPWYN QKTEAERQRN LLLRAFTDFL ENSP00000420387/1-1134 LCILISKALI NTVLKYMWQS EPFRDEPWYN QKTESERQRN LFLKAFTDFL ENSBTAP00000042566/1-1133 LCILISKALI NTTLKYVWQS EPSRDEPWYN RKTEAERQRN LFLRAFTDFL bmy_15912T0/1-795 ---------- ---------- ---------- ---------- ---------- BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000010476/1-1078 AFMVLFNYII PVSMYVTVEM QKFLGSYFIT WDEEMFDEET GEGPLVNTSD ENSP00000420387/1-1134 AFMVLFNYII PVSMYVTVEM QKFLGSYFIT WDEDMFDEET GEGPLVNTSD ENSBTAP00000042566/1-1133 AFMVLFNYII PVSMYVTVEL QKFLGSYFLT WDEDMFDEEM GEGPLVNTSD bmy_15912T0/1-795 --MVLFNYII PVSMYVTVEM QKFLGSYFIT WDEEMFDEGT GEGPLVNTSD BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000010476/1-1078 LNEELGQVEY VFTDKTGTLT ENNMEFKECC VEGHVYVPHA VCNGQVLPAA ENSP00000420387/1-1134 LNEELGQVEY IFTDKTGTLT ENNMEFKECC IEGHVYVPHV ICNGQVLPES ENSBTAP00000042566/1-1133 LNEELGQVEY VFTDKTGTLT ENNMEFKECC VEGHVCVPHA VCNGQVLPDA bmy_15912T0/1-795 LNEELGQVEY VFTDKTGTLT ENNMEFKECC VEGHVYVPHA ICNGQVLPAA BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000010476/1-1078 AAIDMIDTSP GAGGREREEL FFRAVCLCHT VQVKDDAEVD GPRKSPDSGK ENSP00000420387/1-1134 SGIDMIDSSP SVNGREREEL FFRALCLCHT VQVKDDDSVD GPRKSPDGGK ENSBTAP00000042566/1-1133 SAIDMIDASP GASGREREEL FFRALCLCHT IQVKDDDEVD GPQKSPDSGK bmy_15912T0/1-795 AAIDMIDASP GAGGREREEL FFRAVCLCHT IQVKDGDEAD GPRKSPDSGR BACU017402/1-602 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000010476/1-1078 RCAYISSSPD EVALVEGIQR LGFTYLRLKE NYMELRNRDN DIEXXXXXXX ENSP00000420387/1-1134 SCVYISSSPD EVALVEGVQR LGFTYLRLKD NYMEILNREN HIERFELLEI ENSBTAP00000042566/1-1133 RSAYISSSPD EVALVEGIQR FGFTYLRLKD NYMELLNRDN DIERFELLEI bmy_15912T0/1-795 RCAYISASPD EVALVEGIQR LGFTYLRLKD NYMELQNRGN DIERFELLEI BACU017402/1-602 ---------- ---------- ---------- --MELQNRGN DIERFELLEI 551 600 ENSTTRP00000010476/1-1078 XXXXXXXXXX XXXXXXXTGE IYLFCKGADS ---------- ISRVSSQIRS ENSP00000420387/1-1134 LSFDSVRRRM SVIVKSATGE IYLFCKGADS SIFPRVIEGK VDQIRARVER ENSBTAP00000042566/1-1133 LSFDSVRRRM SVIVKSATGE IYLFCKGADS SIFPRVTEGK VDQIQSRVER bmy_15912T0/1-795 LSFDSVRRRM SVIVKSATGE IYLFCKGADS SIFPRVIEGK VDQIRSRVER BACU017402/1-602 LSFDSVRRRM SVIVKSATGE IYLFCKGADS SIFPRVIEGK VDQIRSRVER 601 650 ENSTTRP00000010476/1-1078 NERAEGLRTL CVAYKRLMQE EYEGIYKLLQ AARVALHDRE RKLAEAYEQI ENSP00000420387/1-1134 NA-VEGLRTL CVAYKRLIQE EYEGICKLLQ AAKVALQDRE KKLAEAYEQI ENSBTAP00000042566/1-1133 NA-VEGLRTL CVAYKTLIPE EYEGIRELLQ DAKVALQDRD KKLAEAYEQI bmy_15912T0/1-795 NA-VEGLRTL CVAYKRLFQE EYEGICKLLQ AAKVALQDRE RKLAEAYEQI BACU017402/1-602 NA-VEGLRTL CVAYKRLIQE EYEGVCELLQ AAKVALQDRE RKLAEAYEQI 651 700 ENSTTRP00000010476/1-1078 EKDLILLGAT AVEDRLQEKA ADTIEALQKA GIKVWVLTGD KMETAAAACY ENSP00000420387/1-1134 EKDLTLLGAT AVEDRLQEKA ADTIEALQKA GIKVWVLTGD KMETAAATCY ENSBTAP00000042566/1-1133 ETDLVLLGAT AVEDRLQEKA ADTIEALQKA GIKVWVLTGD KMETAAATCY bmy_15912T0/1-795 EKDLILLGAT AVEDRLQEKA ADTIEALQKA GIKVWVLTGD KMETAAAACY BACU017402/1-602 EKDLILLGAT AVEDRLQEKA ADTIEALQKA GIKVWVLTGD KMETAAAACY 701 750 ENSTTRP00000010476/1-1078 ACRLFRRNTQ LLEVTTKRLE EQSLHDVLCE LSKTVLHRSA SLTRDSFSGL ENSP00000420387/1-1134 ACKLFRRNTQ LLELTTKRIE EQSLHDVLFE LSKTVLRHSG SLTRDNLSGL ENSBTAP00000042566/1-1133 ACKLFRRNTQ LLEVTTKRLE EQSLHDVLFE LSKTVLRSSA SLTRDNFSGL bmy_15912T0/1-795 ACKLFRRNTQ LLEVTTKRLE EQSLHDLLFE LSKTILHCGA SLTRDSFSGL BACU017402/1-602 ACKLFRRNTQ LLEVTTKRLE EQSLHDVLFE LSKTILHCGA SLTRDNFSGL 751 800 ENSTTRP00000010476/1-1078 SADMQDYGLI IDGAALSLIM KPCEDGSSSH YRELFLDICR NCSAVLCCRM ENSP00000420387/1-1134 SADMQDYGLI IDGAALSLIM KPREDGSSGN YRELFLEICR SCSAVLCCRM ENSBTAP00000042566/1-1133 SADMQDYGLI IDGAALSLIM KPREDGSSSN YRELFLDICR NCSAVLCCRM bmy_15912T0/1-795 SADTQDYGLI IDGAALSLIV KPREDGSSSS YRELFLDICR NCSAVLCCRM BACU017402/1-602 SADAQDYGLI IDGAALSLIM KPREDGSSSS YRELFLDICR NCSAVLCCRM 801 850 ENSTTRP00000010476/1-1078 APLQKAQIV- -IKFS-EHPI TLA---DAND VSM-LEPR-G IGIIGK-GRQ ENSP00000420387/1-1134 APLQKAQIVK LIKFSKEHPI TLAIGDGAND VSMILEAHVG IGVIGKEGRQ ENSBTAP00000042566/1-1133 APLQKAQIVK LIKLSKEHPI TLAIGDGAND VSMILEAHVG IGVIGKEGRQ bmy_15912T0/1-795 APLQKAQIVK LIKFSKERPI TLAIGDGAND VSMILEAHVG IGIIGKEGRQ BACU017402/1-602 APLQKAQIVK LIKFSKERPI TLAIGDGAND VSMILEAHVG IGIVGKEGRQ 851 900 ENSTTRP00000010476/1-1078 AARNSDYAIP KFKHLKKMLL VHGHFYYIRI SELVQYFFYK NVCFIFPQFL ENSP00000420387/1-1134 AARNSDYAIP KFKHLKKMLL VHGHFYYIRI SELVQYFFYK NVCFIFPQFL ENSBTAP00000042566/1-1133 AARNSDYAIP KFKHLKKMLL VHGHFYYIRI SELVQYFFYK NVCFIFPQFL bmy_15912T0/1-795 AARNSDYAIP KFKHLKKMLL VHGHFYYIRI SELVQYFFYK NVCFIFPQFL BACU017402/1-602 AARNSDYAIP KFKHLKKMLL VHGHFYYIRI SELVQYFFYK NVCFIFPQFL 901 950 ENSTTRP00000010476/1-1078 YQFFCGFSQQ TLYDTAYLTL YNISFTSLPI LLHSLTEQHV SMDTLKRDPA ENSP00000420387/1-1134 YQFFCGFSQQ TLYDTAYLTL YNISFTSLPI LLYSLMEQHV GIDVLKRDPT ENSBTAP00000042566/1-1133 YQFFCGFSQQ TLYDTAYLTL YNISFTSLPI LLYSLMEQHV AMDTLKRDPA bmy_15912T0/1-795 YQFFCGFSQQ TLYDTAYLTL YNISFTSLPI LLYSLMEQHV AMDTLTRDPA BACU017402/1-602 YQFFCGFSQQ TLYDTAYLTL YNISFTSLPI LLYSLMEQHV AMDTLKRDPA 951 1000 ENSTTRP00000010476/1-1078 LYRDIAKNAL LRWRVFIYWT FLGVFDALVF FFGAYFMFEN TTVTSNGQ-- ENSP00000420387/1-1134 LYRDVAKNAL LRWRVFIYWT LLGLFDALVF FFGAYFVFEN TTVTSNGQ-- ENSBTAP00000042566/1-1133 LYRDIAKNAL LRWRAFIYWT LLGLFNALVF FFGAYFMFEN TTVTSNGQ-- bmy_15912T0/1-795 LYRDIAKNAL LRWRVFIYWT FLGVFDALVF FFGAYFMFEN TTVTSNGQIV BACU017402/1-602 LYRDIAKNAL LRWRVFIYWT FLGVFDALVF FFGAYFMFEN TTVTSNGQ-- 1001 1050 ENSTTRP00000010476/1-1078 ------XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000420387/1-1134 ------IFGN WTFGTLVFTV MVFTVTLKLA LDTHYWTWIN HFVIWGSLLF ENSBTAP00000042566/1-1133 ------VFGN WTFGTLVFTV MVLTVTLKLA LDTHYWTWVN HFVIWGSLLF bmy_15912T0/1-795 TTNTHMMFGN WTFGTLVFTV MVFTVTLKLA LDTHYWTWIN HVVIWGSLLF BACU017402/1-602 ------MFGN WTFGTLVFTV MVFTVTLKLA LDTHYWTWIN HVVIWGSLLF 1051 1100 ENSTTRP00000010476/1-1078 XXXXXXXXXX XXXPFLSYQR MYYVFIRMLS SGPAWLAIVL LVAVSLLPDV ENSP00000420387/1-1134 YVVFSLLWGG VIWPFLNYQR MYYVFIQMLS SGPAWLAIVL LVTISLLPDV ENSBTAP00000042566/1-1133 YIVFSLLWGG VIWPFLSYQR MYYVFIQMLS SGPAWLAIVL LVTVSLLPDV bmy_15912T0/1-795 YVVFSLLWGG IIWPFLNYQR MYYVFIQMLS SGPAWLAIVL LVVVSLLPDV BACU017402/1-602 YVVFSLLWGG IIWPFLNYQR MYYVFIQMLS SGPAWLAIVL LVVVSLLPDV 1101 1150 ENSTTRP00000010476/1-1078 LKKVLCRQLW PSATERVQ-- ---------- ---------- -------- ENSP00000420387/1-1134 LKKVLCRQLW PTATERVQ-- --TKSQCLSV EQSTIFMLSQ TSSSLSF- ENSBTAP00000042566/1-1133 LKKVLCRQLW PSATERVQ-- --TRNQCLSV EQPTVFMLSQ TSSSLTF- bmy_15912T0/1-795 LKKVLCRQLW PSATERVQRS SSRRAPADAA PSPDRPLLMD PEPRPRRE BACU017402/1-602 LKKVLCQQLW PSATEKVQ-- --TRSQCLSV EQPTVFMLSQ TSSSLTF-