KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:42 2014 Check: 00 .. Name: ENSP00000228284/1-963 Len: 1072 Check: 5794 Weight: 1.00 Name: ENSBTAP00000042572/1-655 Len: 1072 Check: 2340 Weight: 1.00 Name: ENSTTRP00000003779/1-957 Len: 1072 Check: 5770 Weight: 1.00 Name: bmy_08264T0/1-1034 Len: 1072 Check: 2919 Weight: 1.00 Name: BACU008369/1-1025 Len: 1072 Check: 7842 Weight: 1.00 // 1 50 ENSP00000228284/1-963 MATAAETSAS EPEAESKAGP KADGEEDEVK AARTRRKVLS RAVAAATYKT ENSBTAP00000042572/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003779/1-957 MATAAAASAS EAEAEPKAGP KAEGEEAEAK EARTRRKVLS RAVAAATYKT bmy_08264T0/1-1034 MATAAAASAS EAEAEPKAGP KAEGEEVEAK EARTRRKVLS RAVATSTYKT BACU008369/1-1025 MATAAAASAS EVEAEPKAGP KAEGEEVEAK EARTRRKVLS RAVATATYKT 51 100 ENSP00000228284/1-963 MGPAWDQQEE GVSESDGD-E YAMASSAESS PGEYEWEYDE EEEKNQLEIE ENSBTAP00000042572/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003779/1-957 VGPEWDQQEE GVSESDGDEE YAMASSAESS PGEYEWEYD- EEEKNQLEIE bmy_08264T0/1-1034 VGPEWDQQEE GVSESDGDEE YAMASSAESS PGEYEWEYD- EEEKNQLEIE BACU008369/1-1025 VGLEWDQQEE GVSESDGDEE YAMASSAESS PGEYEWEYD- EEEKNQLEIE 101 150 ENSP00000228284/1-963 RLEEQLSINV YDYNCHVDLI RLLRLEGELT KVRMARQKMS EIFPLTEELW ENSBTAP00000042572/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003779/1-957 RLEEQLSINV YDYNCHVDLI RLLRLEGELT KVRMARQKMS EIFPLTEELW bmy_08264T0/1-1034 RLEEQLSINV YDYNCHVDLI RLLRLEGELT KVRMARQKM- -------KLW BACU008369/1-1025 RLEEQLSINV YDYNCHVDLI RLLRLEGELT KVRMARQKMS EIFPLTEELW 151 200 ENSP00000228284/1-963 LEWLHDEISM AQDGLDREHV YDLFEKAVKD YICPNIWLEY GQYSVGGIGQ ENSBTAP00000042572/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003779/1-957 LEWLHDEISM ALDGLDREHV YDLFEKAVKD YICPNIWLEY GQYSVGGIGQ bmy_08264T0/1-1034 LEWLHDEISM ALDGLDREHV YDLFEKAVKD YICPNIWLEY GQYSVGGIGQ BACU008369/1-1025 LEWLHDEISM ALDGLDREHV YDLFEKAVKD YICPNIWLEY GQYSVGGIGQ 201 250 ENSP00000228284/1-963 KGGLEKVRSV FERALSSVGL HMTKGLALWE AYREFESAIV EAAR------ ENSBTAP00000042572/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003779/1-957 KGGLEKVRSV FERALSSVGL HMTKGLAIWE AYREFESAIV EAAR------ bmy_08264T0/1-1034 KGGLEKVRSV FERALSSVGL HMTKGLAIWE AYREFESAIV EAARPIAGFL BACU008369/1-1025 KGGLEKVRSV FERALSSVGL HMTKGLAIWE AYREFESAIV EAARPIAGFL 251 300 ENSP00000228284/1-963 ---------- --LEKVHSLF RRQLAIPLYD MEATFAEYEE WSEDPIPESV ENSBTAP00000042572/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003779/1-957 ---------- --LEKVHSLF RRQLAIPLYD MEATFAEYEE WSEDPIPESV bmy_08264T0/1-1034 SPFDREQTFD SQLEKVHSLF RRQLAIPLYD MEATFAEYEE WSEDPIPESV BACU008369/1-1025 SPFDREQTFD SQLEKVHSLF RRQLAIPLYD MEATFAEYEE WSEDPIPESV 301 350 ENSP00000228284/1-963 IQNYNKALQQ LEKYKPYEEA LLQAEAPRLA EYQAYIDFEM KIGDPARIQL ENSBTAP00000042572/1-655 ---------- ---------- -LQAEAPRLA EYQAYIDFEM KIGDPARIQL ENSTTRP00000003779/1-957 IQNYNKALQQ LEKYKPYEET LLQAEAPRLA EYQAYIDFEM KIGDPARIQL bmy_08264T0/1-1034 IQNYNKALQQ LEKYKPFEEA LLQAEAPRLA EYQAYIDFEM KIGDPARIQL BACU008369/1-1025 IQNYNKALQQ LEKYKPYEEA LLQAEAPRLA EYQAYIDFEM KIGDPARIQL 351 400 ENSP00000228284/1-963 IFERALVENC LVPDLWIRYS QYLDRQLKVK DLVLSVHNRA IRNCPWTVAL ENSBTAP00000042572/1-655 IFERALVENC LVPDLWIRYS QYLDRQLKVK DLVLSAHSRA VRNCPWTVAL ENSTTRP00000003779/1-957 IFERALVENC LVPDLWIRYS QYLDRQLKVK DLVLSVHSRA VRNCPWTVAL bmy_08264T0/1-1034 IFERALVENC LVPDLWIRYS QYLDRQLKVK DLVLSVHSRA VRNCPWTVAL BACU008369/1-1025 IFERALVENC LVPDLWIRYS QYLDRQLKVK DLVLSVHSRA VRNCPWTVAL 401 450 ENSP00000228284/1-963 WSRYLLAMER HGVDHQVISV TFEKALNAGF IQATDYVEIW QAYLDYLRRR ENSBTAP00000042572/1-655 WSRYLLALER HGVEHRVISV TFEKALSAGF IQATDYVEIW QAYLDYLRRR ENSTTRP00000003779/1-957 WSRYLLAMER HGVDHRVISV TFEKALSAGF IQATDYVEIW QAYLDYLRRR bmy_08264T0/1-1034 WSRYLLAMER HGVDHRVISV TFEKALSAGF IQATDYVEIW QAYLDYLRRR BACU008369/1-1025 WSRYLLAMER HGVDHRVISV TFEKALSAGF IQATDYVEIW QAYLDYLRRR 451 500 ENSP00000228284/1-963 VDFKQDSSKE LEELRAAFTR ALEYLKQEVE ER-------- ---------- ENSBTAP00000042572/1-655 VDFKQDSSKE LEELRSAFAR ALEYLKQEVE ER-------- ---------- ENSTTRP00000003779/1-957 VDFKQDSSKE LEELRSAFAR ALEYLKQEVE ER-------- ---------- bmy_08264T0/1-1034 VDFKQDSSKE LEELRSAFAR ALEYLKQEVE ERKWGPPPAL SARASCSGRC BACU008369/1-1025 VDFKQDSSKE LEELRSAFAR ALEYLKQEVE ER-------- ---------- 501 550 ENSP00000228284/1-963 ---------- ---------- ---FNESGDP SCVIMQNWAR IE-------- ENSBTAP00000042572/1-655 ---------- ---------- ---FSESGDP SCLIMQNWAR IE-------- ENSTTRP00000003779/1-957 ---------- ---------- ---FSESGDP SCLIMQNWAR IE-------- bmy_08264T0/1-1034 TFSVRGDLPL NYFLISSTSV LQGFSESGDP SCLIMQNWAR IEVNVFDTLP BACU008369/1-1025 ---------- ---------- ---FSESGDP SCLIMQNWAR IEVNVFDILS 551 600 ENSP00000228284/1-963 ---------- ---------- -ARLCNNMQK ARELWDSIMT RGNAKYANMW ENSBTAP00000042572/1-655 ---------- ---------- -ARLCNNMQK ARELWDSIMT RGNAKFANMW ENSTTRP00000003779/1-957 ---------- ---------- -ARLCNNMQK ARELWDSIMT KGNAKYANMW bmy_08264T0/1-1034 VSSPFEGPLS NSVTEAESGS QARLCNNMQK ARELWDSIMT KGNAKYANMW BACU008369/1-1025 VSSPFEGPLS DSVTEAESGS QARLCNNMQK ARELWDSIMT KGNAKYANMW 601 650 ENSP00000228284/1-963 LEYYNLERAH GDTQHCRKAL HRAVQCTSDY PEHVCEVLLT MERTEGSLED ENSBTAP00000042572/1-655 LEYYNLERAH GDTQHCRKAL HRAVQCTSDY PEHVCEVLLT MERTEGTLED ENSTTRP00000003779/1-957 LEYYNLER-H GDTQH-QKAL HRAVQCTSDY PEHVCEVLLT MERTEGTLED bmy_08264T0/1-1034 LEYYNLERAH GDTQHCRKAL HRAVQCTSDY PEHVCEVLLT MERTEGTLED BACU008369/1-1025 LEYYNLERAH GDTQHCRKAL HRAVQCTSDY PEHVCEVLLT MERTEGTLED 651 700 ENSP00000228284/1-963 WDIAVQKTET RLARVNEQRM KAAEKEAALV QQEEEKAEQR KRARAEKKAL ENSBTAP00000042572/1-655 WDIAVQKTET RLARVNEQRI KAAEKEAALA QQEEEKVEQR KRARAEKKAL ENSTTRP00000003779/1-957 WDIAVQKTET RLARVNEQRI KAAEKEAALA QQEEEKVEQR KRARAEKKAL bmy_08264T0/1-1034 WDIAVQKTET RLARVNEQRI KAAEKEAALA QQEEEKVEQR KRARAEKKAL BACU008369/1-1025 WDIAVQKTET RLARVNEQRI KAAEKEAALA QQEEEKVEQR KRARAEKKAL 701 750 ENSP00000228284/1-963 KKKKKIRGPE KRGADEDDEK EWGDDEEEQP SKRRRVENSI PAAGETQ-NV ENSBTAP00000042572/1-655 KKKKKTRGAD KHRADEDDEK EWGDDEEEQP SKRRRVENSV PPAGEAEPGS ENSTTRP00000003779/1-957 KKKKKTRGSD KSKADEDDEK EWGDDEEEQP SKRRRVENSV PPTGEAELGP bmy_08264T0/1-1034 KKKKKTRGSD KSKADEDDEK EWGDDEEEQP AKRRRVENSV PPAGEAE--- BACU008369/1-1025 KKKKKTRGSD KSKADEDDEK EWGDDEEEQP SKRRRVENSV PPAGEAEPGP 751 800 ENSP00000228284/1-963 EVAAGPAGKC AAVDVEPPSK QKE-KAASLK RDMPKVLHDS SKDSITVFVS ENSBTAP00000042572/1-655 E--ADLSGSS APAATESPSE LKEVRVGARR RDVPKVPHDS SKDGVTVFVS ENSTTRP00000003779/1-957 EADPGLSGSS APAAAEPPSE QKEQRAATRR RDVPRVLHDS SKDGVTVFVS bmy_08264T0/1-1034 ---PGLSGGS APAAAEPPSE RQEQRAAARR RDAPRVLHDS GKDAVTVFVS BACU008369/1-1025 EARPGLCGGS APAAAEPPSE QQEQRAAARR RDVPRVPHDS SKDGVTVFVS 801 850 ENSP00000228284/1-963 NLPYSMQEPD TKLRPLFEAC GEVVQIRPIF SNRGDFRGYC YVEFKEEKSA ENSBTAP00000042572/1-655 NLPYGLGEPA ATLRPLFEAC GDVVEVRPIF SNRGDFRGYC YVEFREEAAA ENSTTRP00000003779/1-957 NLPYGLQEPA ATLRPLFEAC GDVVEVRPIY SNRGDFRGYC YVEFKEEAVA bmy_08264T0/1-1034 NLPYGLREPA ATLRPLFEAC GDVVEVRPIF SNRGDFRGYC YVEFKEEAVA BACU008369/1-1025 NLPYGLQEPA ATLRPLFEAC GDVVEVRPIF SNRGDFRGYC YVEFKEEAVA 851 900 ENSP00000228284/1-963 LQALEMDRKS VEGRPMFVSP CVDKSKNPDF KVFRYSTSLE KHKLFISGLP ENSBTAP00000042572/1-655 LQALQLDRQS VEGRPMFVSP CVDKSKNPDF KVFRYSTALE KHKLFVSGLP ENSTTRP00000003779/1-957 LRALELDRQT VEGRPMFVSP CVDKSKNPDF KVFRYSTALE KHKLFVSGLP bmy_08264T0/1-1034 LRALELDRQT VEGRPMFVSP CVDKSKNPDF KVFRYSTALE KHKLFVSGLP BACU008369/1-1025 LRALELDRQT VEGRPMFVSP CVDKSKNPDF KVFRYSTALE KHKLFVSGLP 901 950 ENSP00000228284/1-963 FSCTKEELEE ICKAHGTVKD LRLVTNRAGK PKGLAYVEYE NESQASQAVM ENSBTAP00000042572/1-655 FSCTKEELEE ICKAHGTVKD IRLVTNRAGK PKGLAYVEYE NESQASQAVL ENSTTRP00000003779/1-957 FSCTKEELEE ICKAHGTVKD IRLVTNRAGK PKGLAYVEYE NESQASQAVL bmy_08264T0/1-1034 FSCTKEELEE ICKAHGTVKD IRLVTNRAGK PKGLAYVEYE NESQASQAVL BACU008369/1-1025 FSCTKEELEE ICKAHGTVKD IRLVTNRAGK PKGLAYVEYE NESQASQAVL 951 1000 ENSP00000228284/1-963 KMDGMTIKEN IIKVAISNPP QRKVPEKPET RKAPGGPMLL PQTYGARGKG ENSBTAP00000042572/1-655 KMDGMTIREN VIKVAISNPP QRKVPEKPEA RKAPGSALLP RQVYGARGKG ENSTTRP00000003779/1-957 KMDGMTIKEN VIKVAISNPP QRKAPEKPEA RKAPGGAMVP RQIYGARGKG bmy_08264T0/1-1034 KMDGMTIKEN VIKVAISNPP QRKAPEKPEA RKAPGGAMVP RQIYGARGKG BACU008369/1-1025 KMDGMTIKEN VIKVAISNPP QRKAPEKPEA RKAPGSAMVP RQIYGARGKG 1001 1050 ENSP00000228284/1-963 RTQLSLLPRA LQRPSAAAPQ AENGPAAAPA VAAPAATEAP KMSNADFAKL ENSBTAP00000042572/1-655 RTQLSLLPRA LQRPSAATAQ AENGPA---- --TPATTEAP KMSNADFAKL ENSTTRP00000003779/1-957 RTQLSLLPRA LQRPSATAAQ AENGPA---- --TPAATEVP KMSNADFAKL bmy_08264T0/1-1034 RTQLSLLPRA LQRPSATAAQ AENGPA---- -PPPAATEVP KMSNADFAKL BACU008369/1-1025 RTQLSLLPRA LQRPSATAAQ AEDGPA---- -PPPAATEVP KMSNADFAKL 1051 1100 ENSP00000228284/1-963 FLRK------ ---------- -- ENSBTAP00000042572/1-655 LLRK------ ---------- -- ENSTTRP00000003779/1-957 LLRK------ ---------- -- bmy_08264T0/1-1034 LLRK------ ---------- -- BACU008369/1-1025 LLRKYPDVHS NMYFEMGVPW FT