KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:43 2014 Check: 00 .. Name: ENSBTAP00000042575/1-847 Len: 879 Check: 9257 Weight: 1.00 Name: ENSP00000305924/1-873 Len: 879 Check: 6112 Weight: 1.00 Name: ENSTTRP00000006696/1-847 Len: 879 Check: 3696 Weight: 1.00 Name: bmy_17969T0/1-719 Len: 879 Check: 115 Weight: 1.00 Name: BACU007739/1-641 Len: 879 Check: 2573 Weight: 1.00 // 1 50 ENSBTAP00000042575/1-847 MHPPSPAAAA AVMDFSQNSL FGYMEDLQEL TIIERPVRRS LKTPEEIERL ENSP00000305924/1-873 MHPPPPAAA- --MDFSQNSL FGYMEDLQEL TIIERPVRRS LKTPEEIERL ENSTTRP00000006696/1-847 ---------- ---------- --------KL TIIERPVRRS LKTPEEIERL bmy_17969T0/1-719 ---------- ---------- ------MRMH TYLPREYGSH YVCPEGVTLW BACU007739/1-641 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000042575/1-847 TVDEDLSDIE RAVYLLSAGQ DIQGTSVIAN LPFLMRQNPA ETLRRVLPKV ENSP00000305924/1-873 TVDEDLSDIE RAVYLLSAGQ DVQGTSVIAN LPFLMRQNPT ETLRRVLPKV ENSTTRP00000006696/1-847 TVDEDLSDIE RAVYLLSAGQ DIQGTSVIAN LPFLMRQNPA ETLRRILPKV bmy_17969T0/1-719 RRTLTGFDFK STLFLI---- ---------- ---------- ---------I BACU007739/1-641 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000042575/1-847 REALHVAGVE MQLTAAVSFL TILQDESVSV HTYAHSFLQV ILLHLEHRDA ENSP00000305924/1-873 REALHVAGVE MQLTAAMSFL TILQDESVSI HAYTHSFLQV ILLHLEHRDT ENSTTRP00000006696/1-847 REVLRVAGVE MQLTAAVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17969T0/1-719 QEVLHVAGVE MQLTAAVSFL TILQEESVSI HTYAHSFLQV ILLHLEHRDA BACU007739/1-641 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000042575/1-847 GVSNAWLETL LSVIEVLPKD TLRHEILNPL VSKAQLSQTV QSRLVSCKIL ENSP00000305924/1-873 GVSNAWLETL LSVIEVLPKE TLRHEILNPL VSKAQLSQTV QSRLVSCKIL ENSTTRP00000006696/1-847 XVSNAWLETL LSVIEVLPKE TLRHEILNPL VSKAQLSQTV QSRLVSCKIL bmy_17969T0/1-719 GVSNAWLETL LSVIEVLPKE TLRHEILNPL VSKAQLSQTV QSRLVSCKIL BACU007739/1-641 ---------- ---------- ---------- ---------- -----MCRQL 201 250 ENSBTAP00000042575/1-847 GKLTNKFDAL AIKREILPLV KSLCQDVEYE VRSCMCRQLE NIAQGIGTEL ENSP00000305924/1-873 GKLTNKFDAH TIKREILPLV KSLCQDVEYE VRSCMCRQLE NIAQGIGTEL ENSTTRP00000006696/1-847 GKLTNKFDAL AIKREILPLV KSLCQDVEYE VRSCMCRQLE NIAQGIGTEL bmy_17969T0/1-719 GKLTNKFDAL AIKREILPLV KSLCQDVEYE VRSCMCRQLE NIAQGIG--- BACU007739/1-641 ENIAQGIGTE LTKSVVLP-- ---------- ---------- ---------- 251 300 ENSBTAP00000042575/1-847 TKSVVLPELI ELSRDEGSSV RLAAFETLVN LLDIFDTDDR SQTILPVVKS ENSP00000305924/1-873 TKSVVLPELI ELSRDEGSSV RLAAFETLVN LLDIFDTDDR SQTILPLVKS ENSTTRP00000006696/1-847 TKSVVLPELI ELSRDEGSSV RLAAFETLVN LLDIFDTDDR SQTILPLVKS bmy_17969T0/1-719 ---------- ----DEGSSV RLAAFETLVN LLDIFDTDDR SQTILPLVKS BACU007739/1-641 -------ELI ELSRDEGSSV RLAAFETLVN LLDIFDTDDR SQTILPLVKS 301 350 ENSBTAP00000042575/1-847 FCEKSFKADE SILISLSFHL GKLCHGLYGI FTPDQHLRFL EFYKKLCTLG ENSP00000305924/1-873 FCEKSFKADE SILISLSFHL GKLCHGLYGI FTPDQHLRFL EFYKKLCTLG ENSTTRP00000006696/1-847 FCEKSFKADE SILISLSFHL GKLCHGLYGI FTPDQHLRFL EFYKKLCTLG bmy_17969T0/1-719 FCEKSFKADE SILISLSFHL GKLCHGLYGI FTPDQHLRFL EFYKKLCTLG BACU007739/1-641 FCEKSFKADE SILISLSFHL GKLCHGLYGI FTPDQHLRFL EFYKKLCTLG 351 400 ENSBTAP00000042575/1-847 LQQENGHNEN QIPPQILEQE KKYISVRKNC AYNFPAMIVF VDPKNFHMEL ENSP00000305924/1-873 LQQENGHNEN QIPPQILEQE KKYISVRKNC AYNFPAMIVF VDPKNFHMEL ENSTTRP00000006696/1-847 LQQENGHNEN QIPPQILEQE KKYISVRKNC AYNFPAMTVF VDPKNFHMDL bmy_17969T0/1-719 LQQENGHNEN QIPPQILEQE KKYISVRKNC AYNFPAMIVF VDPKNFHMDL BACU007739/1-641 LQQENGHNEN QIPPQILEQE KKYISVRKNC AYNFPAMIVF VDPKNFHMDL 401 450 ENSBTAP00000042575/1-847 YSTFFCLCHD PEVPVRYTIA ICFYEVSKLL NSGVYLIHKE LITLLQDESL ENSP00000305924/1-873 YSTFFCLCHD PEVPVRYTIA ICFYEVSKLL NSGVYLIHKE LITLLQDESL ENSTTRP00000006696/1-847 YSTFFRLCHD PEVPVRYTIA ICFHEVSKLL NSGVYLIHKE LITLLQDESL bmy_17969T0/1-719 YSTFFCLCHD PEVPVRYTIA ICFYE----- ---------- ---------- BACU007739/1-641 YSTFFCLCHD PEVPVRYTIA ICFYEVSKLL NSGVYLIHKE LITLLQDESL 451 500 ENSBTAP00000042575/1-847 EVLDALIDHL PEILELMSTG GESSVQENKL SSLPDLVPAL TAAEQRAAAS ENSP00000305924/1-873 EVLDALIDHL PEILELMSTG GESSVQENKL SSLPDLIPAL TAAEQRAAAS ENSTTRP00000006696/1-847 EVLDALIDHL PEILELMSTG GESSVQENKL SSLPDLIPAL TAAEQRAAAS bmy_17969T0/1-719 ---------- ---------- ---------L SSLPDLIPAL TAAEQRAAAS BACU007739/1-641 EVLDALIDHL PEILELMSTG GESSVQENKL SSLPDLIPAL TAAEQRAAAS 501 550 ENSBTAP00000042575/1-847 LKWRTHEKLL QKYACLPQVI SSDQIYYRFL QRMFTIMMTN NVLPVQKAAS ENSP00000305924/1-873 LKWRTHEKLL QKYACLPHVI SSDQIYYRFL QRMFTIMMTN NVLPVQKAAS ENSTTRP00000006696/1-847 LKWRTHEKLL QKYACLPHVI SSDQIYYRFL QRMFTIVMTN NVLPVQKAAS bmy_17969T0/1-719 LKWRTHEKLL QKYACLPHII SSDQIYYRFL QRMFTIMMTN NVLPVQKAAS BACU007739/1-641 LKWRTHEKLL QKYACLPHVI SSDQIYYRFL QRMFTIMMTN NVLPVQKAAS 551 600 ENSBTAP00000042575/1-847 RTLCIFLRYN RKQEQRHEVI QKLIEQLGQG KSYWNRLRFL DTCEFIIEIF ENSP00000305924/1-873 RTLCIFLRYN RKQEQRHEVI QKLIEQLGQG KSYWNRLRFL DTCEFIIEIF ENSTTRP00000006696/1-847 RTLCIFLRYN RKQEQRHEVI QKLIEQLGQG KSYWNRLRFL DTCEFIIEIF bmy_17969T0/1-719 RTLCIFLRYN RKQEQRHEVI QKLIEQLGQG KSYWNRLRFL DTCEFIIEIF BACU007739/1-641 RTLCIFLRYN RKQEQRHEVI QKLIEQLGQG KSYWNRLRFL DTCEFIIEIF 601 650 ENSBTAP00000042575/1-847 SKSFFCKYFF LPAIELTHDP VANVRMKLCY LLPKVKSTLK IPADKHLLQQ ENSP00000305924/1-873 SKSFFCKYFF LPAIELTHDP VANVRMKLCY LLPKVKSTLK IPADKHLLQQ ENSTTRP00000006696/1-847 SKSFFCKYFF LPAIELTHDP VANVRMKLCY LLPKVKSTLK IPADKHLLQQ bmy_17969T0/1-719 SKSFFCKYFF LPAIELTHDP VANVRMKLCY LLPKVKSTLK IPADKHLLQQ BACU007739/1-641 SKSFFCKYFF LPAIELTHDP VANVRMKLCY LLPKVKSTLK IPADKHLLQQ 651 700 ENSBTAP00000042575/1-847 LEMCVRKLLC QEKDKDVLAI VKRTVLELDR MEMSMDAFQK KFYEKDLLDQ ENSP00000305924/1-873 LEMCVRKLLC QEKDKDVLAI VKRTVLELDR MEMSMDAFQK KFYEKDLLDQ ENSTTRP00000006696/1-847 LEMCVRKLLC QEKDKDVLAT VKRTVLELDR MEMSMDAFQK KFYEKDLLDQ bmy_17969T0/1-719 LEMCVRKLLC QEKDKDVLAT VKRTVLELDR MEMSMDAFQK KFYEKDLLDQ BACU007739/1-641 LEMCVRKLLC QEKDKDVLAT VKRTVLELDR MEMSMDAFQK KFYEKDLLDQ 701 750 ENSBTAP00000042575/1-847 EKEREELLLL EMVCVHMHTH L----LLSDH KLSKLFQYHT TFTFSINKNW ENSP00000305924/1-873 EKEREELLLL EMEQLEKEKQ QNDGRPMSDK MFEKKRRDTK TPTQSLPKNI ENSTTRP00000006696/1-847 EKEREELLLL EMEQLEKEKQ QNDGRPMSDK TFEKKRRDTK TPT-TLPKNI bmy_17969T0/1-719 EKEREELLLL EMEQLEKEKQ QNDGRPMSDK TFEKKRRDTK TPT-TLPKNI BACU007739/1-641 EKEREELLLL EMEQLEKEKQ QNDGRPMSDK TFEKKRRDTK TPT-TLPKNI 751 800 ENSBTAP00000042575/1-847 KKNYIFEDNI LNNREKSALM NLLEGSH--- ---------- ---------- ENSP00000305924/1-873 PISVPGPSSV TPSTSKEIKK SKLIRSQSFN NQAFHAKYGN LEKCASKSST ENSTTRP00000006696/1-847 PISVPGPSSG TPSTSKEIKK SKLIRSQSFN NQAFHAKYGN LDKCAGKSST bmy_17969T0/1-719 PISVPGPSSG TQSTSKEIKK SKLIRSH--- ---------- ------KSST BACU007739/1-641 PISVPGPTSG TQSTSKEIKK SKLIRSHSFN NQAFHAKYGN LDKCAGKSST 801 850 ENSBTAP00000042575/1-847 -----LSSGL HLADCTCVLS DDSFRMRNTN SAPSSFSSNT SLPSTSRGTG ENSP00000305924/1-873 TGYTTSVSGL GKTSVLS-LA DDSFRTRNAS SVPSSFSPNT PLPSTSRGTG ENSTTRP00000006696/1-847 AAYTPSVSGL TKTSVIS-LT DDSFRTRNAG SAPSSFSSNT PLPSTSRGTG bmy_17969T0/1-719 AAYTPSVSGL TKTSVIS-LT DDSFRTRNAX SAPSSFSSNT PLPSTSRGTG BACU007739/1-641 AAYTPSVSGL TKTSVIS-LT DDSFRTRNAT SAPSSFSSNT PLPSTSRGTG 851 900 ENSBTAP00000042575/1-847 NSVDPKSSGS KDTQPRKATL QRKSRKSNP ENSP00000305924/1-873 NSVDPKSSGS KDTQPRKATL --KSRKSNP ENSTTRP00000006696/1-847 NSGDPKSSGS KDTQPRKATL --KSRKSNP bmy_17969T0/1-719 NSGDPKSSGS KDTQPRKAAL --------- BACU007739/1-641 NSGDPKSSGS KDTQPRKAAL --KSRKSNP