KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:44 2014 Check: 00 .. Name: BACU005591/1-479 Len: 494 Check: 2835 Weight: 1.00 Name: ENSBTAP00000042601/1-273 Len: 494 Check: 9432 Weight: 1.00 Name: ENSP00000345716/1-402 Len: 494 Check: 6241 Weight: 1.00 Name: bmy_11227T0/1-288 Len: 494 Check: 8400 Weight: 1.00 Name: ENSTTRP00000012531/1-399 Len: 494 Check: 2477 Weight: 1.00 // 1 50 BACU005591/1-479 MEKGYNNKTD LHYKLAEGVR VVSRLLVLVA KATEIFPTRE SAPFSHGFGD ENSBTAP00000042601/1-273 ---------- ---------- ---------- ---------- ---------- ENSP00000345716/1-402 ---------- ---------- ---------- ---------- ---------- bmy_11227T0/1-288 ---------- ---------- ----MLIGFS SGKRRKRKSC AGPLLERLRG ENSTTRP00000012531/1-399 ---------- ---------- ---------- ---------- ---------- 51 100 BACU005591/1-479 LATAMAPV-- ---------S GSRSPEWEAS GSRGKRSSSS KSPKPSKSSR ENSBTAP00000042601/1-273 ----MAPV-- ---------F QSSYPE-DTP GSGRQRRSSS KSPPSAQARH ENSP00000345716/1-402 ----MPPV-- ---------S RSSYSE-DIV GSRRRRRSSS GSPPSPQSRC bmy_11227T0/1-288 RELPSVPVSV VTAQLMAEVS RSRYPK-DTP GSRRRRRSSS GRLPSAQARP ENSTTRP00000012531/1-399 ----MVPV-- ---------S RSRYPE-DTP ASRRRRRSSS GSLPSAQARP 101 150 BACU005591/1-479 SPRGCRSRSH SCSRSGDRNG LSHQLSGPSQ GSRNQSYRSR SRSRFRKRPS ENSBTAP00000042601/1-273 SPWVSR---- THSR--DREG LRPSWSRSGV GASYPFNRPG S----RERPP ENSP00000345716/1-402 SSWDGC--SR SHSR--GREG LRPPWSELDV GALYPFSRSG S----RGRLP bmy_11227T0/1-288 SPWGSR--SH SHSR--GREG LTPQWGGSGV GAPCTFSRSG S----REQPT ENSTTRP00000012531/1-399 SPWGSRSQSH SHSR--GREG LRPQWGGSGV GAPCTFSRSG S----RERPT 151 200 BACU005591/1-479 APRGAPFASA SSSAYYGGY- --SRPYGSDK PWPSLLDKER EESLRQKRLS ENSBTAP00000042601/1-273 GLRNYDFSS- S-SFSCGGYR YHQHHYVGNR QWAEDCEKEK EESYRQRRLK ENSP00000345716/1-402 RFRNYAFAS- SWSTSYSGYR YHRHCYAEER QSAEDYEK-- EESHRQRRLK bmy_11227T0/1-288 GLRSYAFSS- S-SVYYGGYR YHHHHYAGDR QWAEDYEK-K EESYRQGRLK ENSTTRP00000012531/1-399 RLRNYAFSS- S-SVYYGGYR YHHHHYAGDR QWAEDYEKEK EESYRQGRLK 201 250 BACU005591/1-479 ERERIGELGA PEVWGLSPKN PEPDSDEHTP VED-EEPKKS TTSASTLEEE ENSBTAP00000042601/1-273 ERERIGELGA PEVWGLSPKF PEPDSDEHTP VED-EEVKTK KSSSSDSSSE ENSP00000345716/1-402 ERERIGELGA PEVWGPSPKF PQLDSDEHTP VEDEEEVTHQ KSSSSDSNSE bmy_11227T0/1-288 ERERTGELGA PEVWGLSPES PEPDSGEHTP VED-EEVKTK KSSSSHSSSE ENSTTRP00000012531/1-399 ERERTGELGA PEVWELSPEF -EPDSGEHTP VED-EEVKTK KNSSSRSRSE 251 300 BACU005591/1-479 KKKKKKKSSH LKERSKKRRK KKSSKRKHKK YSDDSDSDSD SETDSSDEDT ENSBTAP00000042601/1-273 EKR-KKAG-- -RSKNKKKRK KK-SKRKHRT YSDNSDSDSD SDT-NSSSDD ENSP00000345716/1-402 EHRKKKTS-- -RSRNKKKRK NKSSKRKHRK YSD-SDSNSE SDT-NSDSDD bmy_11227T0/1-288 EKRKKKAS-- -RSKNKKRKK K--SKGKHRK YSDNSDSNSD YNT-SSD-DD ENSTTRP00000012531/1-399 EKR-KKAS-- -SSKNKKRKK K--SKGKQRK YSDNSDSNSD YDT-SSD-DD 301 350 BACU005591/1-479 KRRAKKAKTK EKKKKCRLKK YKKKKSKKSR KNSSDSSSKE SQEEFLENPW ENSBTAP00000042601/1-273 KRRVKKSRRK RNAELKSPR- --KRRLRRLK KNPVTQAIRI QKGSWQKT-- ENSP00000345716/1-402 DKKRVKAKKK KKKKKHKTK- --KKKNKKTK KESSDSSCKD SEEDLSEATW bmy_11227T0/1-288 EKRATKAKKK EKEKKHRAKK -PKKKTKKTK KIQ------- ---------- ENSTTRP00000012531/1-399 KKRAAKAKKE K--KKHRAKK -PKKKTKKTK KESSVKSCKD SEGELPEDIW 351 400 BACU005591/1-479 KDRSKPEEPS DLIGPEAPKT LASQDDKPLN YGHGLLPGEG AAMAEYVKAG ENSBTAP00000042601/1-273 ---------- ---------- ---------- ---------- ---------- ENSP00000345716/1-402 MEQPNVADTM DLIGPEAPII HTSQDEKPLK YGHALLPGEG AAMAEYVKAG bmy_11227T0/1-288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012531/1-399 IEQSKVADNM ALIGPEAPII HTSQDEEPLN YGHALLPGEG AAMAEYVKAG 401 450 BACU005591/1-479 KRIPRRGEIG LTSEEIASFE CSGYVMSGSR HRRMEAVRLR KENQIYSADE ENSBTAP00000042601/1-273 ---------- ---------- ------SGLS SQRLQITWI- ---------- ENSP00000345716/1-402 KRIPRRGEIG LTSEEIGSFE CSGYVMSGSR HRRMEAVRLR KENQIYSADE bmy_11227T0/1-288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012531/1-399 KRIPRRGEIG LRSEEIASFE CLGYVMSGSR HCRMEAVRLR KENQIYSADE 451 500 BACU005591/1-479 KRALASFNLE ERRKRENKIL ASFREMVYRK TKGKXXERGQ IRVF ENSBTAP00000042601/1-273 ---------- ---------- ---------- ---------- ---- ENSP00000345716/1-402 KRALASFNQE ERRKRESKIL ASFREMVHKK TKEKDDK--- ---- bmy_11227T0/1-288 ---------- ---------- ---------- ---------- ---- ENSTTRP00000012531/1-399 KRALASFNQE ERRKRE-KIL ASFREMVYRK TKRKDDK--- ----