KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:45 2014 Check: 00 .. Name: ENSTTRP00000010028/1-1112 Len: 1235 Check: 2829 Weight: 1.00 Name: ENSP00000368856/1-1120 Len: 1235 Check: 4922 Weight: 1.00 Name: ENSBTAP00000042616/1-1116 Len: 1235 Check: 5951 Weight: 1.00 Name: BACU006651/1-982 Len: 1235 Check: 8256 Weight: 1.00 Name: bmy_05675T0/1-732 Len: 1235 Check: 9032 Weight: 1.00 // 1 50 ENSTTRP00000010028/1-1112 --------MA EAPPVSGTFK LNTDAAEFIP QERKNSGLNC GGQRRLDSNK ENSP00000368856/1-1120 --------MA EAPPVSGTFK FNTDAAEFIP QEKKNSGLNC GTQRRLDSNR ENSBTAP00000042616/1-1116 --------MA EAPPVSGAFK FNTDAAEFIP QERKNSGLYC GSQRRLDSNR BACU006651/1-982 MNRFFGKAKP KAPPPSLTDC IGTVDSRAES IDKKISRLDA ELVKYKDQIK bmy_05675T0/1-732 ---------- ---------- ---------- ------MVCC ELVRVTAPV- 51 100 ENSTTRP00000010028/1-1112 IGRRN----- ---------- ---------- ---------- ---YSSPPPC ENSP00000368856/1-1120 IGRRN----- ---------- ---------- ---------- ---YSSPPPC ENSBTAP00000042616/1-1116 IGRRN----- ---------- ---------- ---------- ---YSSPPPC BACU006651/1-982 KMREGPAKNM VKQKALRVLK QKRMYEQQRD NLAQQSFNME QANYTIQSLK bmy_05675T0/1-732 ---------- ---------- ---------- ---------- ---WSCQS-C 101 150 ENSTTRP00000010028/1-1112 HLS------- ---------- RQVPYDDISA VH-------- ------HSY- ENSP00000368856/1-1120 HLS------- ---------- RQVPYDEISA VH-------- -----QHSYH ENSBTAP00000042616/1-1116 HLS------- ---------- RQISYDDISA VH-------- -----QHSFY BACU006651/1-982 DTKTTVDAMK LGVKEMKKAY KQVKIDQIED LQDQLEDMME DANEIQEALS bmy_05675T0/1-732 Y--------- ---------- ---------- ---------- ------HVFH 151 200 ENSTTRP00000010028/1-1112 LSGSKPKSQQ TSFQSSATNK SLKNHGLPNQ PWQKLRSEKQ HIRVKRTQGL ENSP00000368856/1-1120 PSGSKPKSQQ TSFQSSPCNK SPKSHGLQNQ PWQKLRNEKH HIRVKKAQSL ENSBTAP00000042616/1-1116 PSGSKPKSQQ TSFQSSVTNK SLKNHGLQNQ PWQKLRSEKQ HIRVKRAQGL BACU006651/1-982 RSYGTPEIDE DDLEAELDAL GDELLADEDS SYLDEAAAAP AIPEGVPTDT bmy_05675T0/1-732 LNC------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000010028/1-1112 TDQTSDAAGL ESVAKSESGT NLREHSPSEN EKEIVGADPR GAKPKKATQF ENSP00000368856/1-1120 AEQTSDTAGL ESSTRSESGT DLREHSPSES EKEVVGADPR GAKPKKATQF ENSBTAP00000042616/1-1116 IDQTSDAPGL ENVAKSESGT NLREHSPSES EKEIVGADPR GAKPKKATQF BACU006651/1-982 KNKTSDAAGL ESVTKSESGT DLREHSPSES EKEIVGADPR GAKPKKATQF bmy_05675T0/1-732 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000010028/1-1112 VYSYGRGPKV KGKLKSEWGH RMTPKPEEAG PENTKPVGVI HPDSSDASSR ENSP00000368856/1-1120 VYSYGRGPKV KGKLKCEWSN RTTPKPEDAG PESTKPVGVF HPDSSEASSR ENSBTAP00000042616/1-1116 IYSYGRGPKV KGKLKSEWGH RMTPKPEEAG PENTKPAGVI HPDSSDASSR BACU006651/1-982 VYNYGRGPKV KGKLKSEWGH RMTPKPEEAG PENTKPVGVI HPDSSDASSR bmy_05675T0/1-732 IKKWARSPAS QADGQSGW-- ---------- ---------- ---------- 301 350 ENSTTRP00000010028/1-1112 KGVADGYGAR RSEQRRYPQK RPPWEVEGAR PRPGRNPPKQ EGQRQTNAGS ENSP00000368856/1-1120 KGVLDGYGAR RNEQRRYPQK RPPWEVEGAR PRPGRNPPKQ EGHRHTNAGH ENSBTAP00000042616/1-1116 KVVAD--GAR RGEQRRHPQK RSPWEVEGAR PRPGRNPPKQ EGQRHTNAGS BACU006651/1-982 KGVADGYGAR RSEQRRYPQK RPPWEVEGAR PRPGRNPPKQ EGQRQTITGS bmy_05675T0/1-732 ---------- -----RCP-- ---------- ---------- ---------- 351 400 ENSTTRP00000010028/1-1112 RS-MASVPKE NLN-RP-KSA CXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368856/1-1120 RNNMGPIPKD DLNERPAKST CDSENLAVIN KSSRRVDQEK CTVRRQDPQV ENSBTAP00000042616/1-1116 RDNMASIPKD DLNERPAKST CDSGNLAVVS RSSRRADPEK CAVRRQDPQV BACU006651/1-982 RSNMASVPKE NLNERPAKSA CDNGNLAVAS NSSRRVDTEK CAVRRQDPQV bmy_05675T0/1-732 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000010028/1-1112 XXXXXXXXXX XXXXXXXXXX GSLIEQLTTE KYECMVCCEL VRVTAPVWSC ENSP00000368856/1-1120 VSPFSRGKQN HVLKNVETHT GSLIEQLTTE KYECMVCCEL VRVTAPVWSC ENSBTAP00000042616/1-1116 AS-FPRGKQN HMLKNVETHT GSLIEQLTTE KYECMVCCEL VRVTAPVWSC BACU006651/1-982 AS-FPRGKQN HMLKNVETH- ---------- ---------- ---------- bmy_05675T0/1-732 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000010028/1-1112 QSCYHVFHLN CIKKWARSPA SQADGQSGWR CPACQNVSAH VPNNYTCFCG ENSP00000368856/1-1120 QSCYHVFHLN CIKKWARSPA SQADGQSGWR CPACQNVSAH VPNTYTCFCG ENSBTAP00000042616/1-1116 QSCYHVFHLN CIKKWARSPA SQADGQSGWR CPACQNVSAH VPNTYTCFCG BACU006651/1-982 ---------- ---------- ---------- ---------- --------TG bmy_05675T0/1-732 ---------- ---------- ---------- --ACQNVSAH VPNNYTCFCG 501 550 ENSTTRP00000010028/1-1112 KVKNPEWSRN EIPHSCGEVC RKKQPGQDCP HSCNLLCHPG PCPPCPAFMT ENSP00000368856/1-1120 KVKNPEWSRN EIPHSCGEVC RKKQPGQDCP HSCNLLCHPG PCPPCPAFMT ENSBTAP00000042616/1-1116 KVKNPEWSRN EIPHSCGEVC RRKQPGQDCP HSCNLLCHPG PCPPCPAFMT BACU006651/1-982 KVKNPEWSRN EIPHSCGEVC RKKQPGQDCP HSCNL----- ---------- bmy_05675T0/1-732 KVKNPEWSRN EIPHSCGEVC RKKQPGQDCP HSCNLLCHPG PCPPCPAFMT 551 600 ENSTTRP00000010028/1-1112 KTCECGRTXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368856/1-1120 KTCECGRTRH TVRCGQAVSV HCSNPCENIL NCGQHQCAEL CHGGQCQPCQ ENSBTAP00000042616/1-1116 KTCECGRTRH TVRCGQAVSV HCSNPCDNIL NCGQHHCAEL CHGGPCQPCR BACU006651/1-982 ---------H TVRCGQAISV HCSNPCENVL NCGRHHCAEL CHGGPCQPCR bmy_05675T0/1-732 KTCECGRTRH TVRCGQAISV HCSNPCGNVL NCGRHHCAEL CHGGPCQPCR 601 650 ENSTTRP00000010028/1-1112 XXXXXXCYCG STSRDVLC-T DVGKSDGFGD F-CLKICAXX XXXXXXXXXX ENSP00000368856/1-1120 IILNQVCYCG STSRDVLCGT DVGKSDGFGD FSCLKICGKD LKCGNHTCSQ ENSBTAP00000042616/1-1116 VILNQVCYCG STSRDVLCGT DIGKSDGFGD FGCLKICGKD LKCGNHTCSQ BACU006651/1-982 IILNQVCYCG STSRDVLCGT DIGKSDGFGD FGCLKICGKD LKCGNHTCSQ bmy_05675T0/1-732 IILNQVCYCG STSRDXLCGT DIGKSDGFGD FGCLKICGKD LKCGNHTCSQ 651 700 ENSTTRP00000010028/1-1112 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368856/1-1120 VCHPQPCQQC PRLPQLVRCC PCGQTPLSQL LELGSSSRKT CMDPVPSCGK ENSBTAP00000042616/1-1116 VCHPQPCQPC PRLPQLVRYC PCGQTPLSQL LELGSSGRKT CMDPVPSCGK BACU006651/1-982 VCHPQPCQPC PRLPQLVRCC PCGQTPLSQL LELGSSGRKT CMDPVPSCGK bmy_05675T0/1-732 VCHPQPCQPC PRLPQLVRCC PCGQTPLSQL LELGSSGRKT CMDPVPSCGK 701 750 ENSTTRP00000010028/1-1112 XXXXXXXXXX X-XFIHTCEK LCHEGD-CG- -PCSRTSVIS CRCSFRTKEL ENSP00000368856/1-1120 VCGKPLPCGS L-DFIHTCEK LCHEGD-CG- -PCSRTSVIS CRCSFRTKEL ENSBTAP00000042616/1-1116 VCGKPLPCGS L-DFIHTCEK LCHEGD-CG- -PCSRTSVIS CRCSFRTKEL BACU006651/1-982 VCGKPLPCGS LADATFMCDK RCNKKRLCGR HKCNEICCVA SR-PLKFPPP bmy_05675T0/1-732 VCGKPLPCGS L-DFIHTCEK RCHEGD-CG- -PCSRTSVIS CRCSFRTKQM 751 800 ENSTTRP00000010028/1-1112 PCTNLKSEDA TFMCDKRCNK KRLCGRHKCN EICCVDKEHK CPLICGRKLR ENSP00000368856/1-1120 PCTSLKSEDA TFMCDKRCNK KRLCGRHKCN EICCVDKEHK CPLICGRKLR ENSBTAP00000042616/1-1116 PCTSLKSEDA TFMCDKRCNK KRLCGRHKCN EICCVDKEHK CPLICGRKLR BACU006651/1-982 PELSFPPKPP PRPPPKFPEP LRLLWLDEAL AICCL----- ---------- bmy_05675T0/1-732 ---------- ---------- LHLCVTRGV- --TRN----- ---------- 801 850 ENSTTRP00000010028/1-1112 CGLHRSDE-C HRGNCQTCWQ ASFDELTCHC GASVIYPPVP CGTRPPECTQ ENSP00000368856/1-1120 CGLHRCEEPC HRGNCQTCWQ ASFDELTCHC GASVIYPPVP CGTRPPECTQ ENSBTAP00000042616/1-1116 CGLHRCEEPC HRGNCQTCWQ ASFDELTCHC GASVIYPPVP CGTRPPECTQ BACU006651/1-982 ---------- ---------- -GFDELTCHC GASVIYPPVP CGTRPPECTQ bmy_05675T0/1-732 ---------- ---------- -GFDELTCHC GASVIYPPVP CGTRPPECTQ 851 900 ENSTTRP00000010028/1-1112 TCARVHECDH PVYHSCHSED KCPPCTFLTQ KWCMGKHELR SNIPCHLVDI ENSP00000368856/1-1120 TCARVHECDH PVYHSCHSEE KCPPCTFLTQ KWCMGKHEFR SNIPCHLVDI ENSBTAP00000042616/1-1116 TCARVHECDH PVYHSCHSED KCPPCTFLTQ KWCMGKHELR SNIPCHLVDI BACU006651/1-982 TCARVHECDH PVYHSCHSEE KCPPCTFLTQ KWCMGKHE-- -------IEL bmy_05675T0/1-732 TCARVHECDH PVYHSCHSED KCPPCTFLTQ KWCMGKHELR SNIPCHLVDI 901 950 ENSTTRP00000010028/1-1112 SCGLPCSATL PCGMHRCQRL CHKGECLVDE VCKQPCTISR ADCGHPCMAP ENSP00000368856/1-1120 SCGLPCSATL PCGMHKCQRL CHKGECLVDE PCKQPCTTPR ADCGHPCMAP ENSBTAP00000042616/1-1116 SCGLPCGATL PCGMHKCQRL CHKGECLGDE ICKQPCTTSR ANCGHPCMAP BACU006651/1-982 QC-------- ---------- ----EC---- ---------- ---------- bmy_05675T0/1-732 SCGLPCGATL PCGMHRCQRL CHKGECLVDE VCKQPCTISR ADCGHPCMAP 951 1000 ENSTTRP00000010028/1-1112 CHLSSPCPVT ACKAKIELQC ECGRRKEIMI CSEASST--- ---------- ENSP00000368856/1-1120 CHTSSPCPVT ACKAKVELQC ECGRRKEMVI CSEASST--- ---------- ENSBTAP00000042616/1-1116 CHLSLPCPVT TCKAKIELQC ECGRRKEIMV CSEASST--- ---------- BACU006651/1-982 ---------- ---------- --GRRKEIMI CSEASST--- ---------- bmy_05675T0/1-732 CHLSSPCPVT ACKAKK---- --GRCPEVAC IASASHRLGH SQDQVLRSGC 1001 1050 ENSTTRP00000010028/1-1112 ---------- ---------- --YRRIAAIS MASKITDMQL GDSVEISKLI ENSP00000368856/1-1120 ---------- ---------- --YQRIAAIS MASKITDMQL GGSVEISKLI ENSBTAP00000042616/1-1116 ---------- ---------- --YQRIAAIS MASKITDMQL GDSVEISKLI BACU006651/1-982 ---------- ---------- --YQRIAAIS MASKITDMQL GDSVEISKLI bmy_05675T0/1-732 GLGGSDCSVL VKLQHLSSLS FLYFRIAAIS MASKITDMQL GDSVEISKLI 1051 1100 ENSTTRP00000010028/1-1112 TKKEIHQARL ECDEECSALE RRKRLAEAFH ISDDSDPFNV RSSGSKFSDS ENSP00000368856/1-1120 TKKEVHQARL ECDEECSALE RKKRLAEAFH ISEDSDPFNI RSSGSKFSDS ENSBTAP00000042616/1-1116 TKKEIHQARL ECDEECSALE RKKRLAEAFH ISDDSDPFNV RSSGSKFSDS BACU006651/1-982 TKKEIHQARL ECDEECSALE RRKRLAEAFH ISDDSDPFNV RSSGSKFSDS bmy_05675T0/1-732 TKKEIHQARL ECDEECSALE RRKRLAEAFH ISDDSDPFNV RSSGSKFSDS 1101 1150 ENSTTRP00000010028/1-1112 LKEDARKDLK FVSDIEKEME ALVEAVNKGK NSKKSHCFPP MNRDHRRIIH ENSP00000368856/1-1120 LKEDARKDLK FVSDVEKEME TLVEAVNKGK NSKKSHSFPP MNRDHRRIIH ENSBTAP00000042616/1-1116 LKEDARKDLR FVSDIEKEME ALVEAVNKGK SSKKSHCFPP MNRDHRRIIH BACU006651/1-982 LKEDARKDLK FVSDIEKEME ALVEAVNKGK NSKKSHCFPP MNRDHRRIIH bmy_05675T0/1-732 LKEDARKDLK FVSDIEKEME ALVEAVNKGK NSKKSHCFPP MNRDHRRIIH 1151 1200 ENSTTRP00000010028/1-1112 DLAQVYGLES VSYDSEPKRN VVVTAVRGKS ICPPTTLTGV LEKEIQSRPP ENSP00000368856/1-1120 DLAQVYGLES VSYDSEPKRN VVVTAIRGKS VCPPTTLTGV LEREMQARPP ENSBTAP00000042616/1-1116 DLAQVYGLES VSYDSEPKRN VVVTAVRGKS ICPSTTLTGV LEKENQSRPP BACU006651/1-982 DLAQVYGLES VSYDSEPKRN VVVTAVRGKS ICPPTTLTGV LEKEIQSRPP bmy_05675T0/1-732 DLAQVYGLES VSYDSEPKRN VVVTAVRGKS ICPPTTLTGV LEKETQSRPP 1201 1250 ENSTTRP00000010028/1-1112 PPIPHHRHQT DKNLGSSNLQ KIAKEPVIDY FDVQD ENSP00000368856/1-1120 PPIPHHRHQS DKNPGSSNLQ KITKEPIIDY FDVQD ENSBTAP00000042616/1-1116 PPIAHHR-QT DKNPGSSNLQ KIAKEPVIDY FDVQD BACU006651/1-982 PPIPHHRHQT DKNPGSSNLQ KIAKEPVIDY FDVQD bmy_05675T0/1-732 PPIPHHRHQT DKTPGSSNLQ KIAKEPVIDY FDVQD