KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:49 2014 Check: 00 .. Name: bmy_13117T0/1-644 Len: 1324 Check: 2545 Weight: 1.00 Name: ENSTTRP00000012160/1-1278 Len: 1324 Check: 7095 Weight: 1.00 Name: BACU002633/1-496 Len: 1324 Check: 4670 Weight: 1.00 Name: ENSP00000399013/1-1306 Len: 1324 Check: 2294 Weight: 1.00 Name: ENSBTAP00000042646/1-1191 Len: 1324 Check: 4349 Weight: 1.00 // 1 50 bmy_13117T0/1-644 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012160/1-1278 ---------- ---------- --------NC DDPLASLLSP VAFSSSSDLN BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 MDSLPRLTSV LTLLFSGLWH LGLTATNYNC DDPLASLLSP MAFSSSSDLT ENSBTAP00000042646/1-1191 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_13117T0/1-644 ---------- ---------- --------MK EAGNRESIK- ---------- ENSTTRP00000012160/1-1278 GTHILAQLNR RVGTGGWSPA DSNAQQWLQM DLGNRVEITA VATQGRYGSS BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 GTHSPAQLNW RVGTGGWSPA DSNAQQWLQM DLGNRVEITA VATQGRYGSS ENSBTAP00000042646/1-1191 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_13117T0/1-644 ---------- ---------- ---------E ERVCETGSDH QPLSDNQQTN ENSTTRP00000012160/1-1278 DWVTSYSLMF SDTGRNWKQY KQEDSIWTFA GNMNADSVMH HKLLHSVRAR BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 DWVTSYSLMF SDTGRNWKQY KQEDSIWTFA GNMNADSVVH HKLLHSVRAR ENSBTAP00000042646/1-1191 ---------- ---------- ------WTFA GNMNADSVMH HKLLHSVRAR 151 200 bmy_13117T0/1-644 CDYFVDSLFE ETQKVGVK-- ---CLSATEQ KKLVGALCLL A----LFYLG ENSTTRP00000012160/1-1278 FVRFMPLEWN PSGKIGMRVE VYGCSYKSDI ADFDGRSSLL Y-RFNQKLMS BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 FVRFVPLEWN PSGKIGMRVE VYGCSYKSDV ADFDGRSSLL Y-RFNQKLMS ENSBTAP00000042646/1-1191 FIRFVPLEWN PSGKIGMRVE VYGCSYSSSL PLFDMATSLL YLKFSKFLMK 201 250 bmy_13117T0/1-644 GKDSLVHVDM RQSQGH---- ---------- ---------- ---------- ENSTTRP00000012160/1-1278 TLKDVISLKF KSMQGDGVLF HGEGQRGDHI TLELQKGRLA LHLSLDDSKP BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 TLKDVISLKF KSMQGDGVLF HGEGQRGDHI TLELQKGRLA LHLNLGDSKA ENSBTAP00000042646/1-1191 QLDQVISLKF KSMQGDGVLF HGEGQRGDHI TLELQRGRLA LHLNLDDSKP 251 300 bmy_13117T0/1-644 -------PST VSDMTVEPTI TVDLMQAQGE IESQKLSSSD QCFSKHQVLT ENSTTRP00000012160/1-1278 RLSSSPPSAT LGSLLDDQHW HSVLLERVGK HVNFTVDRHT QHFRTKGEAD BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 RLSSSLPSAT LGSLLDDQHW HSVLIERVGK QVNFTVDKHT QHFRTKGETD ENSBTAP00000042646/1-1191 RLSSSPPSAT LGSLLDDQHW HSVLLERVGK HVNFTVDRHT QHFRTKGEAD 301 350 bmy_13117T0/1-644 EKPIWAKTLN SGLSVQN--- ---------- ---------- ---------- ENSTTRP00000012160/1-1278 ALDIDYELSF GGIPVPGKPG TFLKKNFHGC IENLYYNGVN IIDLAKRRKH BACU002633/1-496 ---------- MGIVSP---- ---------- ---------- ---------- ENSP00000399013/1-1306 ALDIDYELSF GGIPVPGKPG TFLKKNFHGC IENLYYNGVN IIDLAKRRKH ENSBTAP00000042646/1-1191 ALDIDYELSF GGIPVPGKPG TFLKKNFHGC IENLYYNGVN IIDLAKRRKH 351 400 bmy_13117T0/1-644 -----SSLAM LCIDAEYIP- ---------- ---------- ---------- ENSTTRP00000012160/1-1278 QIYT-XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 QIYT-GNVTF SCSEPQIVPI TFVNSSGSYL LLPGTPQIDG LSVSFQFRTW ENSBTAP00000042646/1-1191 QIYTVGNVTF SCSEPQIVPI TFVNSSSSYL LLPGTPQIDG LSVSFQFRTW 401 450 bmy_13117T0/1-644 ---------- ---------- -------HFV LSKIETTFEL LSKGSDLNDG ENSTTRP00000012160/1-1278 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSDLNDG BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 NKDGLLLSTE LSEGSGTLLL SLEGGILRLV IQKMTERVAE ILTGSNLNDG ENSBTAP00000042646/1-1191 NKDGLLLSTR LSEGSGTLLL SLEDGTLRLV IQKMTERAAE ILTGRDLNDG 451 500 bmy_13117T0/1-644 LWHSVTINAR RNRITLTLDN DAASPAQDTT RMQIYSGNRY YFGGCPDNLT ENSTTRP00000012160/1-1278 LWHSVSINAR RNRITLTLDN DAASPAQDTT RMQIYSGNRY YFGXXXXXXX BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 LWHSVSINAR RNRITLTLDD EAAPPAPDST WVQIYSGNSY YFGGCPDNLT ENSBTAP00000042646/1-1191 LWHSVSINAR RNRITLTLDN DAASPAQDTS RMQIYSGNRY YFGGCPDNLT 501 550 bmy_13117T0/1-644 DSQCLNPIKA FQGCMRLIFI DNQPKDLISV QQGSLGNFSD LHIDLCSIKD ENSTTRP00000012160/1-1278 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002633/1-496 ---------- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 DSQCLNPIKA FQGCMRLIFI DNQPKDLISV QQGSLGNFSD LHIDLCSIKD ENSBTAP00000042646/1-1191 DSQCLNPIKA FQGCMRLIFI DNQPKDLISV QQGSLGNFSD LHIDLCSIKD 551 600 bmy_13117T0/1-644 RCQKSHSK-- ---------- ---------- ---------- ---------- ENSTTRP00000012160/1-1278 XCLPNYCEHG GSCFQSWVTF YCNCSDTGYV GATCHNSLYE QSCEVYRHHG BACU002633/1-496 ---------- --------KF YAECLKE--- ---------- ---------- ENSP00000399013/1-1306 RCLPNYCEHG GSCSQSWTTF YCNCSDTSYT GATCHNSIYE QSCEVYRHQG ENSBTAP00000042646/1-1191 RCLPNYCEHG GSCSQSWTTF YCNCTDTGYV GATCHNSLYE QSCEVYRHQG 601 650 bmy_13117T0/1-644 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012160/1-1278 NTAGFFYIDS DGSGTLGPFQ VYCNITEDKI WTLVQHNNTE LTHVRGANAE BACU002633/1-496 ------YMD- ---------- ---------- ---------- ---------- ENSP00000399013/1-1306 NTAGFFYIDS DGSGPLGPLQ VYCNITEDKI WTSVQHNNTE LTRVRGANPE ENSBTAP00000042646/1-1191 NTAGFFYIDS DGSGPLGPFQ VYCNITEDKI WTLMQHNNTE LTHVQGANPE 651 700 bmy_13117T0/1-644 ---------- ---------- ---------- ---------- -------GTA ENSTTRP00000012160/1-1278 KPYSMTLDYG GSLEQLEAVI DGSEHCEQEV AYHCKRSRLL NTPD---GTP BACU002633/1-496 ---------- ---------- ---------- ---------- -------GTP ENSP00000399013/1-1306 KPYAMALDYG GSMEQLEAVI DGSEHCEQEV AYHCRRSRLL NTPD---GTP ENSBTAP00000042646/1-1191 KPYSMTLDYG GSLEQLEAVI DGSEHCEQEV AYHCKRSRLL NTPEALLGVP 701 750 bmy_13117T0/1-644 HA--IGASNS KVGSYP---- ---------- ---CLE---- ---------- ENSTTRP00000012160/1-1278 LTWWIGRSNE RHPYWGGAPP GVQQCD-CGL DESCLDIRHF CNCDADKDEW BACU002633/1-496 LTWWIGRSNE RHPYWGGAPP GVQQCD-CGL DESCLDIRHF CNCDADKDEW ENSP00000399013/1-1306 FTWWIGRSNE RHPYWGGSPP GVQQCE-CGL DESCLDIQHF CNCDADKDEW ENSBTAP00000042646/1-1191 FYQCPQRVNE KKPSWPSAIF NFQCVQSCGE EESCFLIQRY STVAATPNDL 751 800 bmy_13117T0/1-644 ---------- EKKVPVVVL- -------KQP KAYGL----- --DQIFW--- ENSTTRP00000012160/1-1278 -TNDTGFLSF KDHLPVTQIV ITDTNRSNSE AAWRIGPLRC YGDRHFWNAV BACU002633/1-496 -TNDTGFLSF KDHLPVTQIV ITDTNRSNSE AAWRIGPLRC YGDRHFWNAV ENSP00000399013/1-1306 -TNDTGFLSF KDHLPVTQIV ITDTDRSNSE AAWRIGPLRC YGDRRFWNAV ENSBTAP00000042646/1-1191 TTNQHKNINF IEYLCINKLY YIDTVRIYNP MSYRIGKLCC HNKQSFYNPT 801 850 bmy_13117T0/1-644 ---------- --------FM PNITLFEEQE CLLEAAGASC RHSRGVKCSF ENSTTRP00000012160/1-1278 SFYTETSYLH F-PTFHAEFS ADISFFFKTT AL---SGVFL E-NLGIK--D BACU002633/1-496 SFYTEASYLH F-PTFHAEFS ADISFFFKTT AL---SGVFL E-NLGIK--D ENSP00000399013/1-1306 SFYTEASYLH F-PTFHAEFS ADISFFFKTT AL---SGVFL E-NLGIK--D ENSBTAP00000042646/1-1191 HMATSLSQTH FKQDNKEEFS RPLAFFFKYT AV---SGTVL ENNLEVK--L 851 900 bmy_13117T0/1-644 FQKVYVKEED MLVDLVEIW- GP--LTDTES GANEDADW-- -LRSKSRAPT ENSTTRP00000012160/1-1278 FIRLEISXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002633/1-496 FIRLEISSPS EVTFAIDVGN GPVELIVRSS SPLNDNQWHY VWAERNLKET ENSP00000399013/1-1306 FIRLEISSPS EITFAIDVGN GPVELVVQSP SLLNDNQWHY VRAERNLKET ENSBTAP00000042646/1-1191 LASLEVSAPS EITFAIDVGN GPIELIVQSP SSLNDNQWHY VRAERNLKET 901 950 bmy_13117T0/1-644 LAISDFIARQ KTQTASDACA LL-------- --------SE SLLTHIMMLL ENSTTRP00000012160/1-1278 XXXXXXXXXX XXXXXXXXXX XXXXXXQLFV --GGTSSRQK GFLGCIRSLH BACU002633/1-496 SLQVDNLPRM TRETSEEGHF RLQLNSQLFV --GGTSSRQK GFLGCIRSLH ENSP00000399013/1-1306 SLQVDNLPRS TRETSEEGHF RLQLNSQLFV --GGTSSRQK GFLGCIRSLH ENSBTAP00000042646/1-1191 SLQVDNLPRM TRETSEEGHF RLQLNSQLFV GSGGTSSRQK GFLGCIRSLH 951 1000 bmy_13117T0/1-644 WASEEYDINS CVYAESSVLA TVVGDFTENV NFEIDLEGRG VG-------- ENSTTRP00000012160/1-1278 LNGQKLDLEE RAKVTSGVRP GCPGHCSSYG RICHNG-GKC VEKPSGYFCD BACU002633/1-496 LNGQKLDLEE RAKVTSGVRP GCPGHCSSYG RICHNG-GKC VEKHSGYFCD ENSP00000399013/1-1306 LNGQKMDLEE RAKVTSGVRP GCPGHCSSYG SICHNG-GKC VEKHNGYLCD ENSBTAP00000042646/1-1191 LNGQKLDLEE RAKVTSGVRP GCPGHCSSYG SICHNG-GKC VEKHSGYFCD 1001 1050 bmy_13117T0/1-644 ------EGP- ----SRIIWV RSTVLCHVCK --LSKSSHAF LPSESLCPEC ENSTTRP00000012160/1-1278 CTNSPYEGPF CRKEVSAVFE AGTSVTYMFQ EPYPVTKNIS LSSSAIYADA BACU002633/1-496 CTNSPYEGPF CRKEVSAVFE AGTSVTYMFQ EPYPVTKNIS LSSSAIYADA ENSP00000399013/1-1306 CTNSPYEGPF CKKEVSAVFE AGTSVTYMFQ EPYPVTKNIS LSSSAIYTDS ENSBTAP00000042646/1-1191 CTSSPYEGPF CKKEVSAVFE AGTSVTYMFQ EPYPVTKNVS LSSSAIYADA 1051 1100 bmy_13117T0/1-644 RASEMRAAKI QKTEQRIPSV SSFWNSNCHS IVEHALKLED NF-------- ENSTTRP00000012160/1-1278 APSKENIA-L SFVTAQAPSL LLCINSSSQG YLAVLLCKNG DLQVRYQLSK BACU002633/1-496 TPSKENIA-L SFVTAQAPSL LLCINSSSQG YLAVLLCKND TF-------- ENSP00000399013/1-1306 APSKENIA-L SFVTTQAPSL LLFINSSSQD FVVVLLCKNG SLQVRYHLNK ENSBTAP00000042646/1-1191 ALSKENIA-L SFVTAQAPSL LLYINSSSQD FLAVLLCKNG SLQVRSQLNK 1101 1150 bmy_13117T0/1-644 ---------- ---------- ---------- --MLGARVQV GYVLGARERY ENSTTRP00000012160/1-1278 EETHVFTIDT ENFANRRLHH LKINREGRVF TIQMDQHLRL SYNFSSEVEF BACU002633/1-496 ---------- ---------- ------GNLV EIKRGLLLKG AFFVLPKRKK ENSP00000399013/1-1306 EETHVFTIDA DNFANRRMHH LKINREGREL TIQMDQQLRL SYNFSPEVEF ENSBTAP00000042646/1-1191 EETHVFTINT ENFANRRLHH LKINREGRGL TIQMDQQLRL SYNFSPEVEF 1151 1200 bmy_13117T0/1-644 DAI------- ---------- ---------- -CNSKIKLS- ---------- ENSTTRP00000012160/1-1278 RAIRSLTLGK VTENLGLDSE VAKANTLGFV GCLASVQYNH IAPLKAALRH BACU002633/1-496 MPT------- ---------- ---------- -AISYIKWLQ FQP------- ENSP00000399013/1-1306 RVIRSLTLGK VTENLGLDSE VAKANAMGFA GCMSSVQYNH IAPLKAALRH ENSBTAP00000042646/1-1191 RAMRSLTLGK VTENLGLDAE VAKANALGFV GCLASVQYNH ITPLKAALRH 1201 1250 bmy_13117T0/1-644 -----IIVAG HTTEFISLSM EEMSKSV--- -------FGS TDVLLA-ANA ENSTTRP00000012160/1-1278 ATTAPVTIQG ILTESSCASM MDSDVNAVTT VHSSSDLFGK TDEREPLTNT BACU002633/1-496 -----SGLRS QGVETWLANI FNKAAQA--- ---------- GGERAKGCKA ENSP00000399013/1-1306 ATVAPVTVHG TLTESSCGFM VDSDVNAVTT VHSSSDPFGK TDEREPLTNA ENSBTAP00000042646/1-1191 STTAPITIQG ALIESSCASL MDSDVNAVTT VHSSSDLFGK TDEREPLTNA 1251 1300 bmy_13117T0/1-644 MMKTLAIIPS LLSL------ ---------- ---------- ---------- ENSTTRP00000012160/1-1278 VQSDSALIGG VIAVVIFIIF SIIGIMSRVL YQHKQSHRTN QMKEKEYPEN BACU002633/1-496 VLVNLSLTGC DLA------- ---GLEFFFV LDHRS----- ---------- ENSP00000399013/1-1306 VRSDSAVIGG VIAVVIFIIF CIIGIMTRFL YQHKQSHRTS QMKEKEYPEN ENSBTAP00000042646/1-1191 VRSDSAIIGG VIAVVIFIIF SIIGIMSRFL YQHKQSHRTN QMKEKEYPEN 1301 1350 bmy_13117T0/1-644 ---------- ---------- ---- ENSTTRP00000012160/1-1278 LDSSFRNDID LQNTVSECKR EYFI BACU002633/1-496 ---------- ---------- ---- ENSP00000399013/1-1306 LDSSFRNEID LQNTVSECKR EYFI ENSBTAP00000042646/1-1191 LDSSFRNDID LQNTVSECKR EYFI