KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:51 2014 Check: 00 .. Name: ENSP00000339906/1-343 Len: 390 Check: 2762 Weight: 1.00 Name: ENSBTAP00000042667/1-334 Len: 390 Check: 3794 Weight: 1.00 Name: ENSTTRP00000005728/1-275 Len: 390 Check: 7116 Weight: 1.00 Name: bmy_16598T0/1-329 Len: 390 Check: 7574 Weight: 1.00 Name: BACU006823/1-290 Len: 390 Check: 3349 Weight: 1.00 // 1 50 ENSP00000339906/1-343 ---------- ---------- -MNQLGGLFV NGRPLPLDTR QQIVRLAVSG ENSBTAP00000042667/1-334 ---------- ---FSHPGIS SVNQLGGLFV NGRPLPLDTR QQIVQLAISG ENSTTRP00000005728/1-275 ---------- ---------- ---------- ---------R QQIVQLAVSG bmy_16598T0/1-329 WAGERGDFGC DASFSCPGVS SVNQLGGLFV NGRPLPLDTR QQIVRLAVSG BACU006823/1-290 ---------- ---------S SVNQLGGLFV NGRPLPLDTR QQIVQLAVSG 51 100 ENSP00000339906/1-343 MRPCDISRIL KVSNGCVSKI LGRYYRTGVL EPKGIGGSKP RLATPPVVAR ENSBTAP00000042667/1-334 MRPCDISRSL KVSNGCVSKI LGRYYRTGVL EPKGIGGSKP RLATPPVVAR ENSTTRP00000005728/1-275 MR-CDISRSI KVSNGCVSKI LGRYYRTGVL EPKGTGGSKP RLATPPVVAR bmy_16598T0/1-329 MRPCDISRTL KVSNGCVSKI LGRYYRTGVL EPRGIGGSKP RLATPPVVAR BACU006823/1-290 MRPCDISRSL KVSNGCVSKI LGRYYRTGVL EPRGIGGSKP RLATPPVVAR 101 150 ENSP00000339906/1-343 IAQLKGECPA LFAWEIQRQL CAEGLCTQDK TPSVSSINRV LRALQEDQGL ENSBTAP00000042667/1-334 IAQLKGQCPA LFAWEIQRQL CAEGLCTQDK TPSVSSINRV LRALQEDQRP ENSTTRP00000005728/1-275 IAQLKGECPA LFAWEIQRQL CAEGLCTQDK TPSVSSINRV LRAIQEDQRF bmy_16598T0/1-329 IAQLKGECPA LFAWEIQRQL CTEGLCTQDK TPSVSSINRV LRAIQEDQRL BACU006823/1-290 IAQLKGECPA LFAWEIQRQL CAEGLCTQDK TPSVSSINRV LRAIQEDQRL 151 200 ENSP00000339906/1-343 PCTRLRSP-- ---------- ---------- ----AVLAPA VLTPHSGSET ENSBTAP00000042667/1-334 PWIHLRLP-- ---------- ---------- ----AGLGPI PRTPPCDSEA ENSTTRP00000005728/1-275 PGAQLRLP-- ---------- ---------- ----AVLAPV PPTPPSGSEA bmy_16598T0/1-329 PGAQLR---- ---------G ITITDPHQPL SPFAAVLAPV PPTLPSGSEA BACU006823/1-290 PGAQLRLPAP GTWGLHSTRG ITITDPHQPL SPFAAVLAPV PPTPPSGSEV 201 250 ENSP00000339906/1-343 PRGTHPGTGH RNRTIFSPSQ AEALEKEFQR GQYPDSVARG KLATATSLPE ENSBTAP00000042667/1-334 PRGPHPGTGH RNRTIFSPGQ AEALEKEFQR GQYPDSVARG KLAAATSLPE ENSTTRP00000005728/1-275 PRGPHP-TGH RNRTIFSPSQ A-ALEKEFQR GQYPDSAARG KLAAATSLPE bmy_16598T0/1-329 PRGPHPGTGH RNRTIFSPGQ AEALEKEFRR GQYPDSVARG KLAAATSLPE BACU006823/1-290 PRGPHPGTGH RNRTIFSPGQ AEALEKEFRR GQYPDSVARG KLAAATSLPE 251 300 ENSP00000339906/1-343 DTVRVWFSNR RAKWRRQEKL KWEMQLPGAS QGLTVPRVAP GIISAQQSPG ENSBTAP00000042667/1-334 DTVRIWFSNR RAKWRRQEKL KWEMQFPGGS RGLTVPSASP GIFSAQQSPG ENSTTRP00000005728/1-275 DTVRIWFSNR RAKWRRQEKL KGEMRFPGAS QDLTIPSTSP GTVSAQQPPG bmy_16598T0/1-329 DTVRIWFSNR RAKWRRQEKL KGEMRFPGAS QDLTVPSASA GTVSAQQSPG BACU006823/1-290 DTVRIWFSNR RAKWRRQEKL KGEMRFPGAS QDLTVPSASA GTVSAQVSRK 301 350 ENSP00000339906/1-343 SVPTAALPAL EPLGPSCYQL CWATAPERCL SDTPPKACLK PCWGHLPPQP ENSBTAP00000042667/1-334 SVSKAVLPTL ESLGP-YYPL RWGTASEGCL SDTPPQACLQ SCW------- ENSTTRP00000005728/1-275 SVSTAVLPAL ASLAASSYPR FWGTASDRCL SDTPPQACLK PCW------- bmy_16598T0/1-329 SVSTAVLPAL ESLAPSSYPR FWGTASDRCL SDTPPQACLK HC-------- BACU006823/1-290 RGKRVN---- ---------- -WED------ ---------- ---------- 351 400 ENSP00000339906/1-343 NSLDSGLLCL PCPSSHCHLA SLSGSQALLW PGCPLLYGLE ENSBTAP00000042667/1-334 VGSNKNIFKI GSSSVVHHVF KLLSIHPIYR I--------- ENSTTRP00000005728/1-275 ---------- ---------- ---------- ---------- bmy_16598T0/1-329 ---------- ---------- ---------- ---------- BACU006823/1-290 ---------- ---------- ---------- ----------