KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:53:51 2014 Check: 00 .. Name: ENSP00000408342/1-670 Len: 727 Check: 210 Weight: 1.00 Name: ENSBTAP00000042700/1-690 Len: 727 Check: 4490 Weight: 1.00 Name: bmy_11762T0/1-537 Len: 727 Check: 6854 Weight: 1.00 Name: ENSTTRP00000009274/1-543 Len: 727 Check: 5574 Weight: 1.00 // 1 50 ENSP00000408342/1-670 MAHHLPAAME SHQDFRSIKA KFQASQPEPS DLPKKPPKPE FGK-LKKFSQ ENSBTAP00000042700/1-690 VVHRPPAAMG SHQDFRSLQA KFQASQPETG DLPKKPPKPE FQKLLKKFPQ bmy_11762T0/1-537 --------MG SHQDFRSLQA KFQASQPETS KLPKVSPKPE FNKLLKKCPQ ENSTTRP00000009274/1-543 VARHPPAAMG SHQDFRSLQA KFQASQPETG KLPQVSPKPE FNKLLKKFPQ 51 100 ENSP00000408342/1-670 PELSEHPKKA PLPEFGAVSL KPPPPEVTDL PKKPPPPEVT DLPKKPPPPE ENSBTAP00000042700/1-690 PELGEHPKKP PQPEF----- -------TDL PKKPPKLEFS ELSKKFLQPE bmy_11762T0/1-537 PELGEHPKKH PLPEF----- -------TNL PKKPCKLEFS ELSKKVPQLK ENSTTRP00000009274/1-543 PELGEHPKKH PQPEF----- -------TDL PKKPCKLEFS ELSKKVPQLK 101 150 ENSP00000408342/1-670 VTDLPKK--- --------PP PPEVTDLPKK PSKLELSDLS KKFPQLGATP ENSBTAP00000042700/1-690 ATPLPRKPEV PEAPSQKPPQ QPELSNTPRP PMEPKFSTPH KKPPQPEFCG bmy_11762T0/1-537 ATPFPRK--- --------PL QPELSHGPRP PIGPKLG--- ---------A ENSTTRP00000009274/1-543 ATPFPRK--- --------PL QPELSHAPKP PTGPKFG--- ---------A 151 200 ENSP00000408342/1-670 FPRKPLQPEV GEAPLKA--- ---------- ---------- ---------- ENSBTAP00000042700/1-690 LPRKPPQPQV SGLPKKPLPQ PESSEIPPVP LLKPEFSEPH PHSSEPNFST bmy_11762T0/1-537 FPRKSQQPES NEATLKP--- ---------- ---------- ---------- ENSTTRP00000009274/1-543 FPRKSQQPES NEATLK---- ---------- ---------- ---------- 201 250 ENSP00000408342/1-670 -----SLPEP GAPARKPLQP DELSHPARPP SEPKSGAFPR -KLWQPEAGE ENSBTAP00000042700/1-690 LPKKLPQPEF CELPRKPLQP QVGGLPKKPL LQPESSEVPP VPLLKPEFGE bmy_11762T0/1-537 -----PQPEF STVPEKPPQP Q--------- ---------- ---------- ENSTTRP00000009274/1-543 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000408342/1-670 ATPRSPQPEL STFPKKPAQP EFNVYPKKPP QPQVGGLPKK SVPQPEFSEA ENSBTAP00000042700/1-690 PHPHSSEPNF STLPKKAPQP EFCELPRKPL QPQVSGLPKK PLLQPESSEV bmy_11762T0/1-537 ---------- ------PPQP EFSTVPEKPP QPQVSGLPEK SLPQPESTEV ENSTTRP00000009274/1-543 ---------- ------PPQP KFSTVPEKPP QLGVSGLPEK SLPQPESTEV 301 350 ENSP00000408342/1-670 AQTPLWKPQS SEPKRDS--- --SAFPKKAS QPPLSDFPKK PPQPELGDLT ENSBTAP00000042700/1-690 PPVPLSKPES GEPHPHSSQP DFSTFPRKIA RPQLNDLPKK PLPPEFGDLT bmy_11762T0/1-537 PPMPPSKPES SEPQPHSSQP NFSTVPGKMP QPPLSDLPEK PPRPECGDLP ENSTTRP00000009274/1-543 PPMPPSKPES SEPQPHSSQP NFSTVPGKMP QPPLSDLPEK PPRPECGDLP 351 400 ENSP00000408342/1-670 RTSSEPEVSV LPKRPRPAEF KALSKKPPQP ELGGLPRTSS EPEFNSLPRK ENSBTAP00000042700/1-690 RTSSEPEVSV VPKKPRQCEF KVLSKKPPQP EPTSLSRTSS EPEFSVFPSK bmy_11762T0/1-537 RTSSEPECSL LPK------- ---------- ---------- ---------E ENSTTRP00000009274/1-543 RTSSGPECSL LPK------- ---------- ---------- ---------E 401 450 ENSP00000408342/1-670 LLQPERRGPP RKFSQPEPSA VLKRHPQPEF FGDLPRKPPL PSSASESSLP ENSBTAP00000042700/1-690 FLQPECRGPP RKLSQPEPGS LPR------- --NLPRKPLL PGSFSESSLP bmy_11762T0/1-537 FLQPEWRGLP CNFSQAKPRS LPRKRPQAEF LGDLPRKPPL PGSHSESSLP ENSTTRP00000009274/1-543 FLQPEWRGPP CKSSQPKPRS LPRK--QAEF FGDLPRKPPL PGSRSESSLP 451 500 ENSP00000408342/1-670 AAVAGFSSRH PLSPGFGAAG TPRWRSGGLV HSGGARPGLR PSHPPRRRPL ENSBTAP00000042700/1-690 SAVAGSNPRV PLSPGFGARQ Q---RSGALA RSAGSRLGLR PGHLPRRRPL bmy_11762T0/1-537 TAVAGSSPRF PFSPGFGARQ Q---RSGALA RGGGSRLGLK PGHPPQRRPL ENSTTRP00000009274/1-543 TAVAGSSPRF PLSPGFGGS- ----RSGALT CGGGSRLGLK PGHPPRRRPL 501 550 ENSP00000408342/1-670 PPASSLGHPP AKPPLPPGPV DMQSFRRPSA ASIDLRRTRS AAGLHFQDRQ ENSBTAP00000042700/1-690 PPASSLGPPP AKPPLPPGPR DIQSFRRAAA ADTALPRTSS SAGLYL---- bmy_11762T0/1-537 PPVSSLGAPP AKPPLPPGPR DVQRFRRSLA AGTALQRSSS AGLLHFRARQ ENSTTRP00000009274/1-543 PPVSSLGAPP AKPPLPPGPR DVQRFRRTLA AGTALPRSFS AG---FLARQ 551 600 ENSP00000408342/1-670 PEDIPQVPDE IYELYDDVEP RDDSSPSPKG RDEAPSVQQA ARRPPQDPAL ENSBTAP00000042700/1-690 ---IPQDPDE V---YDDVEP TDHSGPGPRS RDEALSAQQY PWRPPQNPEL bmy_11762T0/1-537 PEDIPQDPDE AYELYDDVEP TNDSRPSPKG RDEVLSTQQP PRRSPQDQEP ENSTTRP00000009274/1-543 PEDTPQ--DE AYKLYEDVEP TDDSRPSPKG RDEVLSTQQP PRRPPQDQEP 601 650 ENSP00000408342/1-670 RKEKDP-QPQ QLPPMDPKLL KQLRKAEKAE REFRKKFKFE GEIVVHTKMM ENSBTAP00000042700/1-690 RKEKVPLQPP QVPPTDLKSL KQLRKAEKAE REFRKKFKFE GEIVVQTRMM bmy_11762T0/1-537 RK-KGP-QPQ QLPPTDLRSL KQIRKAEKAE REFRKKFKFE GEIVIQTRMM ENSTTRP00000009274/1-543 RKEKGP-QPQ QLPPTDLKSL KQIRKAEKAE REFRKKFKFE GEIVIQTRMM 651 700 ENSP00000408342/1-670 IDPNAKTRRG GGKHLGIRRG EILEVIEFTS NEEMLCRDPK GKYGYVPRTA ENSBTAP00000042700/1-690 IDPNAKTRRG GGKHLGIRRG EILEVIEFTS KEEMLCRDTK GKYGYVPRTA bmy_11762T0/1-537 IDPNAKTRRG GGKHLALRRG EILEVIEFTS KEEMLCRDTK GKYGYVPRTA ENSTTRP00000009274/1-543 IDPNAKTRRG GGKHLALRRG EILEXXXXXX XXXXXXXXXX XXXGYVPRTA 701 750 ENSP00000408342/1-670 LLPLETEVYD DVDFCDPLEN QPLPLGR ENSBTAP00000042700/1-690 LLPLETEVYD DVAAWDPLDS QPLP--- bmy_11762T0/1-537 LLPL------ ---------- ------- ENSTTRP00000009274/1-543 LLPLETEVYD DVGSWDPLDN QPFPGGR