KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:53:52 2014  Check: 00 ..

 Name: ENSP00000260372/1-235     Len:    235  Check:  6871  Weight:  1.00
 Name: ENSBTAP00000042737/1-235  Len:    235  Check:  6750  Weight:  1.00
 Name: ENSTTRP00000002405/1-234  Len:    235  Check:  5853  Weight:  1.00
 Name: BACU004938/1-220          Len:    235  Check:  9626  Weight:  1.00
 Name: bmy_15858T0/1-220         Len:    235  Check:  635  Weight:  1.00

//


                          1                                                   50
ENSP00000260372/1-235     MAAANPWDPA SAPNGAGLVL GHFIASGMVN QEMLNMSKKT VSCFVNFTRL 
ENSBTAP00000042737/1-235  MAAANPWDPA TAPNAAGLLL GHFITSELVT EEMLNISKKS TSCFVNFSRL 
ENSTTRP00000002405/1-234  MAEAKPWDPA SEPNAAGLLL GHFVASGLVT QEMLNISKKS TSCFVNFSRL 
BACU004938/1-220          MAAANPWDPA SEPNAAGLLL DHFVASGLVT QEMLNISKKS TSCFVNFSRL 
bmy_15858T0/1-220         MAAANPWDPA SEPNAAGLLL GHFVASGLVT QEMLNISKKS TSCFVNFSRL 


                          51                                                 100
ENSP00000260372/1-235     QQITNIQAEI YQKNLEIELL KLEKDTADVV HPFFLAQKCH TLQSMNNHLE 
ENSBTAP00000042737/1-235  QQITDIQAEI YQKNLEIELL SLEKDAADVV HPSFLAQKCH SLQSMNNHLE 
ENSTTRP00000002405/1-234  QQITDIQAEI YQKNLEIELL RLEKDAADVV HPSFLAQKCH TLQSMNNHLE 
BACU004938/1-220          QQITDIQAEI YQKNLEIELL RLEKDAADVV HPSFLAQKCH TLQSMNNHLE 
bmy_15858T0/1-220         QQITDIQAEI YQKNLEIELL RLEKDAADVV HPSFLAQKCH TLQSMNNHLE 


                          101                                                150
ENSP00000260372/1-235     AVLKEKRSLR QRLLKPMCQE NLPIEAVYHR YMVHLLELAV TFIERLETHL 
ENSBTAP00000042737/1-235  AVLKEKRSLR QRLLKPMCQG NLPIEAVYHR YMVHLLELAV TFIERLEDHL 
ENSTTRP00000002405/1-234  AVLKEKRSLR QRLLKPMCQE NLPIEAVYHR YMVHLLELAV TFIERLEDHL 
BACU004938/1-220          AVLKEKRSLR QRLLKPMCQE NLPIEAVYHR YMVHLLELAV TFIERLEDHL 
bmy_15858T0/1-220         AVLKEKRSLR QRLLKPMCQE NLPIEAVYHR YMVHLLELAV TFIERLEDHL 


                          151                                                200
ENSP00000260372/1-235     ETIRNIPHLA ANLKKMNQAL AKMDILVTET EELAENILKW RKQQNEVSSC 
ENSBTAP00000042737/1-235  ETIRNIPHLD ADLKKMSTAL AKMDILVTET EELAENILKW REQQKEVSSY 
ENSTTRP00000002405/1-234  EIIRNVPHLD ENLKKMSTAL AEMDILVAET AELAENILKW REQQKEISSC 
BACU004938/1-220          EIIRNIPHLD ENLKKMSTAL AEMDILVAET AELAENILKW REQQKEISSC 
bmy_15858T0/1-220         EIIRNIPHLD ENLKKMSTAL AEMDILVAET AELAENILKW REQQKEISSC 


                          201                                                250
ENSP00000260372/1-235     IPKILAEESY LYKHDIIMPP LPFTSKVHVQ TINAK 
ENSBTAP00000042737/1-235  IPKILAEKNS LHKHDVIVPP LPLTSKVNVQ TINAK 
ENSTTRP00000002405/1-234  IPRILAEENF LHKYDVTVPP -PFISKINVQ TINEK 
BACU004938/1-220          IPRILAEENF LHKCDVTVPP ---------- ----- 
bmy_15858T0/1-220         IPRILAEENF LHKYDVTVPP ---------- -----