KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:53 2014 Check: 00 .. Name: ENSTTRP00000013415/1-711 Len: 714 Check: 2602 Weight: 1.00 Name: ENSP00000229729/1-710 Len: 714 Check: 4496 Weight: 1.00 Name: bmy_03129T0/1-591 Len: 714 Check: 402 Weight: 1.00 Name: ENSBTAP00000042762/1-707 Len: 714 Check: 2933 Weight: 1.00 Name: BACU015884/1-676 Len: 714 Check: 3407 Weight: 1.00 // 1 50 ENSTTRP00000013415/1-711 MGGKQ-DQNE VYGEAGGKPA KYDPSFRGPI KNRSCTDIIC CVLFFLFILG ENSP00000229729/1-710 MGGKQRDEDD ---EAYGKPV KYDPSFRGPI KNRSCTDVIC CVLFLLFILG bmy_03129T0/1-591 MPHSP-HSSP ---CPSGKPA KHDPSFRGPI KNRSCTDIIC CVLFFLFILG ENSBTAP00000042762/1-707 MGGKQ-DQDK ---EAYGKPA KYDPSFRGPI RNRSCTDIIC CVLFFLFILG BACU015884/1-676 MGRKQ-DQN- ---EAYGKPA KYDSSFRGPI KNRSCTDIIC CVLFFLFILG 51 100 ENSTTRP00000013415/1-711 YIAVGLVXXX XXXXXXXXXX XXXXXXXXXX XXXXDKPYLL YFNIFSCVLT ENSP00000229729/1-710 YIVVGIVAWL YGDPRQVLYP RNSTGAYCGM GENKDKPYLL YFNIFSCILS bmy_03129T0/1-591 YIAVGLVAWV YGDPQQVLYP RNSTGAYCGI GENKDKPYLL YFNIFSCVLT ENSBTAP00000042762/1-707 YIAVGILAWV YGDPKQVLYP RNSTGAYCGI GENKEKPYLL YFNIFSCVLN BACU015884/1-676 YIAVGLVAWV YGDPQQVLYP RNSTGAYCGI GENKDKPYLL YFNIFSCVLT 101 150 ENSTTRP00000013415/1-711 TNIITIAQNG LACPTPQVCV SSCPEVPWTV ETDQLSQSVG QVFYAANRNF ENSP00000229729/1-710 SNIISVAENG LQCPTPQVCV SSCPEDPWTV GKNEFSQTVG EVFYTKNRNF bmy_03129T0/1-591 TNINGITQNG LECPTPQ--- ---------- ---------- -------RSH ENSBTAP00000042762/1-707 TNIIAIAQNG LKCPTPQVCV SSCPEASWTV EPRQFSQTVE QVFYAANRNF BACU015884/1-676 TNIIGITQNG PECPTPQVCV SSCPEFPWTV EMAQLSQTVG QVFYAANRNF 151 200 ENSTTRP00000013415/1-711 CLPGVPGDMQ VLQSLRQELC PSFLLPSSPA LGRCFPWSNS TVPELPGISN ENSP00000229729/1-710 CLPGVPWNMT VITSLQQELC PSFLLPSAPA LGRCFPWTNV TPPALPGITN bmy_03129T0/1-591 GLWERPSSHR RSGRSSTQQI GTFV--CQGC LGTC------ TVPELPGISN ENSBTAP00000042762/1-707 CLPGVPGNMQ VLQSLQQELC PSFLLPSTPA LGRCFPWTNS TVPELPGISN BACU015884/1-676 CLPGVPGDMQ VLQSLRQELC PSFLLPSTPA LGRCFPWSNS TVPELPGISN 201 250 ENSTTRP00000013415/1-711 -TSIAQGISG LLDSLNARDI SVKIFEDFAQ SWYWILIALG VALVLSLLFI ENSP00000229729/1-710 DTTIQQGISG LIDSLNARDI SVKIFEDFAQ SWYWILVALG VALVLSLLFI bmy_03129T0/1-591 -TSIAQGISG LLDSLNARDI SVRIFEDFAQ SWYWILIALG VALVLSLLFI ENSBTAP00000042762/1-707 -TSISQSISG LLDSLNARDI SVKIFEDFAQ SWYWILIALG LALVLSLLFI BACU015884/1-676 -TSIAQGISG LLDSLNARDI SVRIFEDFAQ SWYWILIALG VALVLSLLFI 251 300 ENSTTRP00000013415/1-711 LLLRLVAGPL VFVLIIGVLG VLAYGIYHSW EEYRVLRDKG ASISQLGFTT ENSP00000229729/1-710 LLLRLVAGPL VLVLILGVLG VLAYGIYYCW EEYRVLRDKG ASISQLGFTT bmy_03129T0/1-591 LLLRLVAGPL VFVLIIGVLG VLAYGIYHSW EEYRVLRDKG ASISQLGFTT ENSBTAP00000042762/1-707 LLLRLVAGPL VFVLIIGVLG VLAYGIYHCW EEYRVLRDKG ASISQLGFTT BACU015884/1-676 LLLRLVAGPL VFVLIVGVLG VLAYGIYHSW EEYRVLRDKG ASISQLGFTT 301 350 ENSTTRP00000013415/1-711 NLSAYSSVQE TWLAALIVLA VLEGILLLVL IFLRQRIRIA IALLEEASRA ENSP00000229729/1-710 NLSAYQSVQE TWLAALIVLA VLEAILLLML IFLRQRIRIA IALLKEASKA bmy_03129T0/1-591 NLSAYSSIQE TWLAALIVLA VLEGILLLML IFLRQRIRIA IALLEEASRT ENSBTAP00000042762/1-707 NLSAYRNVQE TWLAALIILA VLEGVLLLML IFLRQRICIA IALLKEASRA BACU015884/1-676 NLSAYSSVQE TWLAALIVLA VLEGILLLIL IFLRQRIRIA IALLEEASRA 351 400 ENSTTRP00000013415/1-711 VGQMMSTMFY PLFTFVLLLV CIAYWAMTAL YPLPTLGPPG YVFWAPNISL ENSP00000229729/1-710 VGQMMSTMFY PLVTFVLLLI CIAYWAMTAL Y-LATSGQPQ YVLWASNISS bmy_03129T0/1-591 DDV------Y HVLPVVHLCS AACLHCLLG- ---------- ---------- ENSBTAP00000042762/1-707 VGYIMSTMFY PLVTFALLLV CIAYWAIIAL F-LATSGQPQ YVFWAPNSSL BACU015884/1-676 VGQMMSTMFY PLFTFVLLLV CVAYWAMTAL Y--------- ---------- 401 450 ENSTTRP00000013415/1-711 SGCENVPMNT SCNPMDQPVN SSCPGLMCVF QGYLSTGLVQ RSLFNLQIYG ENSP00000229729/1-710 PGCEKVPINT SCNPTAHLVN SSCPGLMCVF QGYSSKGLIQ RSVFNLQIYG bmy_03129T0/1-591 ---------- -HDRSDQPVN SSCPGLMCVF QGYLSTGLVQ RSLFNLQIYG ENSBTAP00000042762/1-707 PGCEKVPMNT SCDPMEQ-VN SSCPGLMCVF QGYQSTGLAQ RSLFNLQIYA BACU015884/1-676 ------PL-- ---P-DQPVN SSCPGLMCVF QGYLSTGLVQ RSLFNLQIYG 451 500 ENSTTRP00000013415/1-711 VLGLFWTINW VLALGQCVLA GAFASFYWAF HKPRDIPTFP LSSAFMRTLR ENSP00000229729/1-710 VLGLFWTLNW VLALGQCVLA GAFASFYWAF HKPQDIPTFP LISAFIRTLR bmy_03129T0/1-591 VLGLFWTINW VLALGQCVLA GAFASFYWAF HKPRDIPTFP LSSAFIRTLR ENSBTAP00000042762/1-707 VLGLFWTINW VLALGQCVLA GAFASFYWAF HKPRDIPTFP LGSAFLRTLR BACU015884/1-676 VLGLFWTINW VLALGQCVLA GAFASFYWAF HKPRDIPTFP LSSAFIRTLR 501 550 ENSTTRP00000013415/1-711 YHTGSLAFGA LILTLVQIAR VILEYIDNKL RGSQNPVARC IMCCFKCCLW ENSP00000229729/1-710 YHTGSLAFGA LILTLVQIAR VILEYIDHKL RGVQNPVARC IMCCFKCCLW bmy_03129T0/1-591 YHTGSLAFGA LILTLVQIAR VILEYIDHKL RGTQNPMARC IMCCFKCCLW ENSBTAP00000042762/1-707 YHTGSLAFGA LILTLVQIAR VILEYIDHKL RGAQNPLTRC ILCCFKCCLW BACU015884/1-676 YHTGSLAFGA LILTLVQIAR VILEYIDHKL RGTQNPMARC IMCCFKCCLW 551 600 ENSTTRP00000013415/1-711 CLEKFIKFLN RNAYIMIAIY GKNFCVSAKN AFMLLMRNVV RVVVLDKVTD ENSP00000229729/1-710 CLEKFIKFLN RNAYIMIAIY GKNFCVSAKN AFMLLMRNIV RVVVLDKVTD bmy_03129T0/1-591 CLEKFIKFLN RNAYIM---- ---------- ---------- ---------- ENSBTAP00000042762/1-707 CLEKFIKFLN RNAYIMIAIY GKNFCVSAKN AFMLLMRNIV RVVVLDKVTD BACU015884/1-676 CLEKFIKFLN RNAYIMIAIY GKNFCVSAKN AFMLLMRNIV RVVVLDKVTD 601 650 ENSTTRP00000013415/1-711 LLLFFGKLLV VGGVGVLSFF FFTGRIQGXX XXXXXXXXXX XXXXXXXXXX ENSP00000229729/1-710 LLLFFGKLLV VGGVGVLSFF FFSGRIPGLG KDFKSPHLNY YWLPIMTSIL bmy_03129T0/1-591 -------LLV VGGVGVLSFF FFTGRIQGLG KDIQSPQLNY YWLPIMTSIL ENSBTAP00000042762/1-707 LLLFFGKLLV VGGVGVLSFF FFTGRIPSLG KTFENPQLNY YWLPIMVSIL BACU015884/1-676 LLLFFGKLLV VGGVGVLSFF FFTGRIQGLG KDIESPQLNY YWLPIMTSIL 651 700 ENSTTRP00000013415/1-711 XXXXXXXXXX XXXXXXXXXX XXXXXEDLER NDGSVDRPYY MSKALLKILG ENSP00000229729/1-710 GAYVIASGFF SVFGMCVDTL FLCFLEDLER NNGSLDRPYY MSKSLLKILG bmy_03129T0/1-591 GAYVIASGFF SVFGMCVDTL FLCFLEDLER NDGSVDRPYY MSKALLKILG ENSBTAP00000042762/1-707 GAYLIASGFF SVFGMCVDTL FLCFLEDLER NDGSADRPYY MSKSLLKILG BACU015884/1-676 GAYVIASGFF SVFGMCVDTL FLCFLEDLER NDGSVDRPYY MSKALLKILG 701 750 ENSTTRP00000013415/1-711 KKNEVPPGDK RKK- ENSP00000229729/1-710 KKNEAPPDNK KRKK bmy_03129T0/1-591 KKNEMPPGDK RKK- ENSBTAP00000042762/1-707 KKNKGTPGDK KRKK BACU015884/1-676 KKNEMPPGDK RKK-