KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:53:54 2014 Check: 00 .. Name: ENSBTAP00000042769/1-402 Len: 464 Check: 6885 Weight: 1.00 Name: ENSP00000443292/1-452 Len: 464 Check: 4427 Weight: 1.00 Name: bmy_08291T0/1-459 Len: 464 Check: 7936 Weight: 1.00 Name: ENSTTRP00000016376/1-453 Len: 464 Check: 3391 Weight: 1.00 // 1 50 ENSBTAP00000042769/1-402 -----TLHCD AKLKNLVGPH L-CILPSPCT PAGETVASSM HSSRYPSPAE ENSP00000443292/1-452 -----MLACL QRTQNAPGQH LACPSKSLEL RKCEAVASAM HSSRYPSPAE bmy_08291T0/1-459 MPGEESGRCS SFQQLLLVSD VGETAVITFL GEGETVASSM HSSRYPSPAE ENSTTRP00000016376/1-453 ------MLAL QRTQNAPGQH V-CPTKSLEL RKCETVASSM HSSRYPSPAE 51 100 ENSBTAP00000042769/1-402 LDAYAEKVAN SPLSIKIFPT NIRVPQHKHL SRTVNGYDTS GQRYSPYPPH ENSP00000443292/1-452 LDAYAEKVAN SPLSIKIFPT NIRVPQHKHL SRTVNGYDTS GQRYSPYPQH bmy_08291T0/1-459 LDAYAEKVAN SPLSIKIFPT NIRVPQHKHL SRTVNGYDTS GQRYSPYPPH ENSTTRP00000016376/1-453 LDAYAEKVAN SPLSIKIFPS NIRVPQHKHL SRTVNGYDTS GQRYSPYPPH 101 150 ENSBTAP00000042769/1-402 TAGYQGLLAI VKAAVSSSSS AAAPAGPAKS VLKSAEGKRT KLSPAAVQVG ENSP00000443292/1-452 TAGYQGLLAI VKAAV-SSSS TAAPAGPAKS VLKSAEGKRT KLSPAAVQVG bmy_08291T0/1-459 TAGYQGLLAV VKAAV-SSSG VAAPPGLTKS VLKSAEGKRT KLSPAAVQVG ENSTTRP00000016376/1-453 TAGYQGLLAV VKAAV-TSSG VAAPPGLTKS VLKSAEGKRT KLSPAAVQVG 151 200 ENSBTAP00000042769/1-402 VAPYPAPSTL GPLAYPKPPE VPAPPPGLPA AAAPAAAVIP LPGRGLPLPP ENSP00000443292/1-452 IAPYPVPSTL GPLAYPKPPE APAPPPGLP- AAATAASVIP LPGRGLPLPP bmy_08291T0/1-459 IAPYPAPSTL GPLAYPKPPE APAPPPGLPA AAATAASVIP LPGRGLPLPP ENSTTRP00000016376/1-453 IAPYPAPSTL GSLAYPKPPE APAPPPGLPA AAATAASVIP LPGRGLPLPP 201 250 ENSBTAP00000042769/1-402 SNLPSIHSLL YQLHQQCQAP GAAPAACQAV PGPPPSPAKH GPVPGFPRTA ENSP00000443292/1-452 SNLPSIHSLL YQLNQQCQAP GAAPPACQGM AIPHPSPAKH GPVPSFPSMA bmy_08291T0/1-459 SNLPSIHSIL YQLNQQCQAQ GAAPAACQAV AIPHPSPAKH GPVPSFPSLA ENSTTRP00000016376/1-453 SNLPSIHSIL YQLNQQCQAP GAAPAACQAV AVPHPSPAKH GPVPSFPSLA 251 300 ENSBTAP00000042769/1-402 YSATAGPPEC RKGAELGQGS TPAALTLAGA AKPAGYADGG LDYLLWPQKP ENSP00000443292/1-452 YSAAAGLPDC RKGTELGQGA TQ-ALTLAGA AKPAGYADSG LDYLLWPQK- bmy_08291T0/1-459 YPATAGPPDC RKGAELGQGS TP-ALTLAGA TKPTGYADGG LDYLLWPQK- ENSTTRP00000016376/1-453 YPATAGPPDC RKGAELGQGS TP-ALTLAGA TKPTGYADGG LDYLLWPQK- 301 350 ENSBTAP00000042769/1-402 PPPPPPPPQP LRAYGGGALA SKSPEACGGR AYERASGSPL NCGVGLPASF ENSP00000443292/1-452 --PPPPPPQP LRAYSGSTVA SKSPEACGGR AYERASGSPL NCGVGLPTSF bmy_08291T0/1-459 --PPPPPPQP LRAYSGGTVA SKSPEACGGR VYERAGGSPV NCGVGLPTSF ENSTTRP00000016376/1-453 -PPPPPPPQP LRAYSGGTVA SKSPEACGGR VYERAGGSPV NCGVGLPTSF 351 400 ENSBTAP00000042769/1-402 TVGQYFAAPW NSVLVTPTSD CYNPAAAA-A AAAAAAAAER AQTLLPSGVL ENSP00000443292/1-452 TVGQYFAAPW NSVLVTPTSD CYNPAAAV-V VTELGPGAAR ELAGPPADAL bmy_08291T0/1-459 TVGQYFAAPW NSVLVTPTSD CYNPAAAAVA VTELGPGVAR ELAGPPAETL ENSTTRP00000016376/1-453 TVGQYFAAPW NSVLVTPTSD CYNPAAAAVA VTELGPGAAR ELAGPPAETL 401 450 ENSBTAP00000042769/1-402 PGASARATC- ---------- ---------- ---------- ---------- ENSP00000443292/1-452 SGLPSKSVCN TSVLSSSLQS LEYLINDIRP PCIKEQMLGK GYETVAVPRL bmy_08291T0/1-459 SGLPSKSVCN TAVLSSSLQS LEYLINDIRP PCIKEQMLGK GYETVAVPRL ENSTTRP00000016376/1-453 SGLPSKSVCN TAVLSSSLQS LEYLINDIRP PCIKEQMLGK GYETVAVPRL 451 500 ENSBTAP00000042769/1-402 ---------- ---- ENSP00000443292/1-452 LDHQHAHIRL PVYR bmy_08291T0/1-459 LDHQHAHIRL PVYR ENSTTRP00000016376/1-453 LDHQHAHIRL PVYR