KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:55 2014 Check: 00 .. Name: ENSP00000328287/1-1314 Len: 1544 Check: 7783 Weight: 1.00 Name: ENSBTAP00000042771/1-1313 Len: 1544 Check: 2464 Weight: 1.00 Name: ENSTTRP00000002578/1-1265 Len: 1544 Check: 1037 Weight: 1.00 Name: BACU002393/1-1204 Len: 1544 Check: 5566 Weight: 1.00 Name: bmy_06014T0/1-1501 Len: 1544 Check: 7844 Weight: 1.00 // 1 50 ENSP00000328287/1-1314 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042771/1-1313 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002578/1-1265 ---------- ---------- ---------- ---------- ---------- BACU002393/1-1204 ---------- ---------- ---------- ---------- ---------- bmy_06014T0/1-1501 MAGPGAPPAQ AGVGGGWAVG QWGEAGDGNV PAGGRGGSPP PPRWRLWRGP 51 100 ENSP00000328287/1-1314 --------MA SKGAGMSF-- ----SRKSYR LTSDAEKSRV TGIVQEKLLN ENSBTAP00000042771/1-1313 --------MA SKEGGMAF-- ----SRKSYK LTSDAERSRV TGIVHEKLLS ENSTTRP00000002578/1-1265 ---------- ---------- ---------- -----EKSRV TGIVHEKLLD BACU002393/1-1204 --------MR VRGGRAVWPW TGAVAESWAD VVSRDAVAEA GGIVHEKLLD bmy_06014T0/1-1501 LAEVGRGSMR VRGGRAVWPW TGAVAESWAD VVSRGAVAEA GGIVHEKLLD 101 150 ENSP00000328287/1-1314 DYLNRIFSSS EHAPPAATSR KPLNFQNLPE HLDQLLQVDN ---EEEESQG ENSBTAP00000042771/1-1313 DYLHRVFASP DHRPAAATSR KPLNFQNLPE HLDQLLHVDD --KEDEESQE ENSTTRP00000002578/1-1265 DYLHRIFSST DRAPTAATSR KLLNFQNLPE HLDQLLHVDE EAEEEEESQG BACU002393/1-1204 DYLHRIFSST DCAPTAATSR KLLNFQNLPE HLDQLLHVDE EAEEEEESQG bmy_06014T0/1-1501 DYLHRIFSST DRAPTAATSR KLLNFQNLPE HLDQLLHVDE EAEEEEESQG 151 200 ENSP00000328287/1-1314 QVEGRLGPST VVLDHTGGFE GLLLVDDDLL GVIGHSNFGT IRSTTCVYKG ENSBTAP00000042771/1-1313 QVEGRLGPST VVLDHTGGFE GLLLVDDDLL GVIGHSNFGT IRSTTCVYKG ENSTTRP00000002578/1-1265 KVEGRLGPST VVLDHTGGFE GLLLVDDDLL GVIGHSNFGT IRSTTCVYKG BACU002393/1-1204 QVEGRLGPST VVLDHTGGFE GLLLVDDDLL GVIGHSNFGT IRSTTCVYKG bmy_06014T0/1-1501 QVEGRLGPST VVLDHTGGFE GLLLVDDDLL GVIGHSNFGT IRSTTCVYKG 201 250 ENSP00000328287/1-1314 KWLYEVLISS QGLMQIGWCT ISCRFNQEEG VGDTHNSYAY DGNRVRKWNV ENSBTAP00000042771/1-1313 KWIYEVLISS QGLMQIGWCT INCRFNQEEG VGDTHNSYAY DGNRVRKWNV ENSTTRP00000002578/1-1265 KWVYEVLISS QGLMQIGWCT INCRFNQEEG VGDTHNSYAY DGNRVRKWNV BACU002393/1-1204 KWIYEVLISS QGLMQIGWCT INCRFNQEEG VGDTHNSYAY DGNRVRKWNV bmy_06014T0/1-1501 KWVYEVLISS QGLMQIGWCT INCRFNQEEG VGDTHNSYAY DGNRVRKWNV 251 300 ENSP00000328287/1-1314 TTTNYGKAWA AGDIVSCLID LDDGTLSFCL NGVSLGTAFE NLSRGLGMAY ENSBTAP00000042771/1-1313 TTTNYGKAWA AGDIVSCLID LDEGTLSFSL NGVSLGTAFE NLSRGLGMAY ENSTTRP00000002578/1-1265 TTTNYGKAWA AGDIVSCLID LDEGTLSFCL NGVSLGTAFE NLSRGLGMAY BACU002393/1-1204 TTTNYGKAWA AGDIVSCLID LDEGTLSFCL NGVSLGTAFE NLSRGLGMAY bmy_06014T0/1-1501 TTTNYGKAWA AGDIVSCLID LDEGTLSFCL NGVSLGTAFE NLSRGLGMAY 301 350 ENSP00000328287/1-1314 FPAISLSFKE SVAFNFGSRP LRYP------ ---------- ---------- ENSBTAP00000042771/1-1313 FPAISLSFKE SVAFNFGSRP LRYP------ ---------- ---------- ENSTTRP00000002578/1-1265 FPAISLSFKE SVAFNFGSRP LRYP------ ---------- ---------- BACU002393/1-1204 FPAISLSFKE SVAFNFGSRP LRYPFVKKAV GCLDALEEAR MGVSLLQELC bmy_06014T0/1-1501 FPAISLSFKE SVAFNFGS-- ---------- ---------- ---------- 351 400 ENSP00000328287/1-1314 ---------- VAGYRPLQDP PSADLVRAQR LLGCFRAVLS VELDPVEGRL ENSBTAP00000042771/1-1313 ---------- VAGYRPLQDP PSTSLVRAQR LLGCFRAVLS MELDPVEGRL ENSTTRP00000002578/1-1265 ---------- VVGYRPLQDP PSADLVRAQE LLGCFQAVLS VELDPVQGRL BACU002393/1-1204 RLVAGPAAVK MVGYRPLQDP PSADLVRAQE LLGCFQAVLS VELDPMEGRL bmy_06014T0/1-1501 ---------- LVGYRPLQDP PSADLVRAQE LLGCFQAVLS VELDPVEGRL 401 450 ENSP00000328287/1-1314 LDKESSKWRL RGQPTVLLTL AHIFHHFAPL LRKVYLVEAV LMSFLLGIVE ENSBTAP00000042771/1-1313 VEKESSEWQL QGQPTVLLTL AHIFHHFAPL LCEVYVVEAV LMSFLLGVVE ENSTTRP00000002578/1-1265 VEKESSEWQL QGQPTVLLTL AHIFHRFAPL LRKVYLVEAV LMSFLLGVVE BACU002393/1-1204 VEKESSEWQL QGQPTVLLTL AHIFHRFAPL LRKVYLVEAV LMSFLLGVVE bmy_06014T0/1-1501 VEKESSEWQL QGQPTVLLTL AHIFHRFAPL LRKVYLVEAV LMSFLLGIVE 451 500 ENSP00000328287/1-1314 KGTPTQAQSV VHQVLDLLWL FMEDYEVQDC LKQLMMSLLR LYRFSPIVPD ENSBTAP00000042771/1-1313 AGPPEQAQTV VHHVLDLLWL FMEDYEVQDC LKQLMMSLLR LYRFSPIVPD ENSTTRP00000002578/1-1265 AGTPAQAQSV VHQVLDLLWL FMEDYEMQDC LKQLMMSLLR LYRFSPIVPD BACU002393/1-1204 AGTPTQAQSV VHQVLDLLWL FMEDYEVQDC LKQLMMSLLR LYRFSPIVPD bmy_06014T0/1-1501 AGTPTQAQSV VHQVLDLLWL FMEDYEVQDC LKQLMMSLLR LYRFSPIVPD 501 550 ENSP00000328287/1-1314 LGLQIHYLRL TIAILRHEKS RKFLLSNVLF DVLRSVVFFY IKSPLRVEEA ENSBTAP00000042771/1-1313 LSLQIHYLRL TIAILSHEKS RKFLLSNVLF DVLRSVVFFY IKSPLRVEEA ENSTTRP00000002578/1-1265 LGLQIRYLRL TIAILSHEKS RKFLLSHVLF DVLRSVVFFY IKSPLRVEEA BACU002393/1-1204 LGLQIRYLRL TIAILSHEKS RKFLLSHVLF DVLRSVVFFY IKSPLRVEEA bmy_06014T0/1-1501 LGLQIRYLRL TIAILSHEKS RKFLLSHVLF DVLRSVVFFY IKSPLRVEEA 551 600 ENSP00000328287/1-1314 GLQELIPTTW WPHCSSREGK ESTEMKEETA EERLRRRAYE RGCQRLRKRI ENSBTAP00000042771/1-1313 GLQELIPTTW WPHRSPREGK E--EVREETS EERLRRRAYE RGCQRLKKRI ENSTTRP00000002578/1-1265 GLQELIPTTW WPHRSSREGK DSKEVKDETS EERLRRRAYE RGCQRLKKRI BACU002393/1-1204 GLQELIPTTW WPHRSSREGK ESKEVKDETS EERLRRRAYE RGCQRLKKRI bmy_06014T0/1-1501 GLQELIPTTW WPHRSSREGK ESKEVKDETS EERLRRRAYE RGCQRLKKRI 601 650 ENSP00000328287/1-1314 EVVEELQVQI LKLLLDNKDD NG-------- ---------- ---------- ENSBTAP00000042771/1-1313 EVVEELQVQI LKLLLNNKDN NG-------- ---------- ---------- ENSTTRP00000002578/1-1265 EVVEELQVQI LKLLLNNQDD NG-------- ---------- ---------- BACU002393/1-1204 EVVEELQVQI LKLLLNNQDD NG-------- ---------- ---------- bmy_06014T0/1-1501 EVVEELQVQI LKLLLNNQDD NGVSDSQTPV WVPGQEGCQT GPGDPEGRAG 651 700 ENSP00000328287/1-1314 ---------- ---------- ---------- -GEASRYIFL TKFRKFLQEN ENSBTAP00000042771/1-1313 ---------- ---------- ---------- -GEASRYIFL TKFRKFLQEN ENSTTRP00000002578/1-1265 ---------- ---------- ---------- -GEASRYIFL TKFRKFLQEN BACU002393/1-1204 ---------- ---------- ---------- -GEASRYIFL TKFRKFLQEN bmy_06014T0/1-1501 SGSCGRVQAK LSPVRGQDPQ LITASAFLPL KGEASRYIFL TKFRKFLQEN 701 750 ENSP00000328287/1-1314 ASGRG----- ---------- ---------- ---------- ---------- ENSBTAP00000042771/1-1313 ASGRG----- ---------- ---------- ---------- ---------- ENSTTRP00000002578/1-1265 ASSRG----- ---------- ---------- ---------- ---------- BACU002393/1-1204 ASGRG----- ---------- ---------- ---------- ---------- bmy_06014T0/1-1501 ASGRGVGIPR PAHHGPLALL QHLHLKFWHL CISSPPAALP SLLIPGSWGR 751 800 ENSP00000328287/1-1314 ---------- ---------- --NMPMLCPP EYMVCFLHRL ISALRYYWDE ENSBTAP00000042771/1-1313 ---------- ---------- --NTPMLCPP EYMVCFLHRL ISALRFYWDE ENSTTRP00000002578/1-1265 ---------- ---------- --NMPMLCPP EYMVCFLHRL ISALRYYWDE BACU002393/1-1204 ---------- ---------- --NMPMLCPP EYMVCFLHRL ISALRYYWDE bmy_06014T0/1-1501 ALNEEWAGLR AAQMHVLHLC LQNMPMLCPP EYMVCFLHRL ISALRYYWDE 801 850 ENSP00000328287/1-1314 YKASNPHASF SEEAYIPPQV FYNGKVDYFD LQRLGGLLSH LRKTLKDDLA ENSBTAP00000042771/1-1313 YKASKPRTSF SEEAYVPPQI FYNGKVDYFD LQRLGGLLSH LRKTLKDDLA ENSTTRP00000002578/1-1265 YKASNPCATF SDEAYIPPQV FYNGKVDYFD LQRLGGLLSH LRKTLKDDLA BACU002393/1-1204 YKASNPYATF SEEAYIPPQV FYNGKVDYFD LQRLGGLLSH LRKTLKDDLA bmy_06014T0/1-1501 YKASNPCTTF SEEAYIPPQV FYNGKVDYFD LQRLGGLLSH LRKTLKDDLA 851 900 ENSP00000328287/1-1314 SKANIVIDPL ELQSTAMDDL DEDEEPAPAM AQRPMQALAV GGPLPLPRPG ENSBTAP00000042771/1-1313 SKANILIDPM ELQATTMDDL DEDEEPAPAA AQRPMQALAV GGALPLPRPG ENSTTRP00000002578/1-1265 SKANILIDPL ELQAATMDDL DEDEEPAPAA AQRPMQALAM GGALPLPRPS BACU002393/1-1204 SKANILIDPL ELQAATMDDL DEDEEPAPAA AQRPMQALAM GGTLPLPRPS bmy_06014T0/1-1501 SKANILIDPL ELQAATMDDL DEDEEPAPAA AQRPMQALAM GGALPLPRPS 901 950 ENSP00000328287/1-1314 WLSSPTLGRA NRFLSTAAVS LMTPRRPLST SEKVKVRTLS VEQRTRED-I ENSBTAP00000042771/1-1313 WLSSPTLGRA NRFLSTAAVS LMTPRRPLSA SEKVKVRTLS AEQRTRED-I ENSTTRP00000002578/1-1265 WLSSPTLGRA NRFLSTAAVS LMTPRRPLST SEKVKVRTLS AEQRTREDSL BACU002393/1-1204 WLSSPTLGRA NRFLSTAAVS LMTPRRPLST SEKVKVRTLS VEQRTRED-I bmy_06014T0/1-1501 WLSSPTLGRA NRFLSTAAVS LMTPRRPLST SEKVKVRTLS VEQRTRED-I 951 1000 ENSP00000328287/1-1314 EGSHWNEGLL LGRPPEEPEQ PLTENSLLEV LDGAVMMYNL SVHQQLGKMV ENSBTAP00000042771/1-1313 EGSQWNEGLL VGRPPEEPEH PLTENSLLEV LDGVVMMYNL SVHQQLGKMV ENSTTRP00000002578/1-1265 KELEW----- ---------- --LTLTLLEV LDGAIMMYNL SV-QQLGKMV BACU002393/1-1204 EGSQWNEGLL VGRPPEEPEQ PLTENSLLEV LDGAIMMYNL SVHQQLGKMV bmy_06014T0/1-1501 EGSQWNEGLL VGRPPEEPEQ PLTENSLLEV LDGAIMMYNL SVHQQLGKMV 1001 1050 ENSP00000328287/1-1314 GVSDDVNEYA MALRDTEDKL RRCPKRRKDI LAELTKSQKV FSEKLDHLSR ENSBTAP00000042771/1-1313 GVSDDVNEYA MALRDTEDKL RRCPKRRKDI LAELSKSQKV FSEKLDHLSR ENSTTRP00000002578/1-1265 GVSDDVNEYA MALRDTEDKL RRCPKRRKDI LAELTKSQKV FSEKLDHLSR BACU002393/1-1204 GVSDDVNEYA MALRDTEDKL RRCPKRRKDI LAELTKSQKV FSEKLDHLSR bmy_06014T0/1-1501 GVSDDVNEYA MALRDTEDKL RRCPTRRKDI LAELTKSQKV FSEKLDHLSR 1051 1100 ENSP00000328287/1-1314 RLAWVHATVY SQEKMLDIYW LLRVCLRTIE HGDRTGSLFA FMPEFYLSVA ENSBTAP00000042771/1-1313 RLAWVHAAVY SQEKMQDIYW LLRVCLRTIE HGDRTGSLFA FMPEFYLSVA ENSTTRP00000002578/1-1265 RLAWVHATVY SQEKMQDIYW LLRVCLRTIE HGDRTGPLFA FMPEFYLSVA BACU002393/1-1204 RLAWVHATVY SQEKMQDIYW LLRVCLRTIE HGDRTGPLFA FMPEFYLSVA bmy_06014T0/1-1501 RLAWVHATVY SQEKMQDIYW LLRVCLRTIE HGDRTGPLFA FMPEFYLSVA 1101 1150 ENSP00000328287/1-1314 INSYSALKNY FGPVHSMEEL PGYEETLTRL AAILAKHFAD ARIVGTDIRD ENSBTAP00000042771/1-1313 INSYSALKNY FGPVHSMEEL PGYEETLTRL AAILAKHFAD TRIVGTDIRD ENSTTRP00000002578/1-1265 INSYSALKNY FGPVHSMEEL PGYEETLTRL AAILAKHFAD TRIVGTDIRD BACU002393/1-1204 INSYSALKNY FGPVHSMEEL PGYEETLTRL AAILAKHFAD TRIVGTDIRD bmy_06014T0/1-1501 INSYSALKNY FGPVHSMEEL PGYEETLTRL AAILAKHFAD TRIVGTDIRD 1151 1200 ENSP00000328287/1-1314 SLMQALASYV CYPHSLRAVE RIPEEQRIAM VRNLLAPYEQ RPWAQTNWIL ENSBTAP00000042771/1-1313 SLMQALASYV CYPNSLRAVE RIPEEQRIAM VRNLLAPYEQ RPWAQTNWIL ENSTTRP00000002578/1-1265 SLMQALASYV CYPNSLRAVE RIPEEQRIAM VRSLLAPYEQ RPWAQTNWIL BACU002393/1-1204 SLMQALASYV CYPNSLRAVE RIPEEQRIAM VGSLLAPYEQ RPWAQTNWIL bmy_06014T0/1-1501 SLMQALASYV CYPNSLRAVE RIPEEQRIAM VRSLLAPYEQ RPWAQTNWIL 1201 1250 ENSP00000328287/1-1314 VRLWRGCGFG YRYTRLPHLL KTKLEDANLP SLQKPCPSTL LQQHMADLLQ ENSBTAP00000042771/1-1313 VRLWRGCGFG YRYTRLPHLL KTKPEDASLP SLQKPCPSTL LQQHMADLLR ENSTTRP00000002578/1-1265 VRLWRGCGFG YRYTRLPHLL KTKPEDANLP SLQKPCPSTL LQQHMADLLR BACU002393/1-1204 VRLWRGCGFG YRYTRLPHLL KTKPEDANLP SLQKPCPSTL LQQHMADLLR bmy_06014T0/1-1501 VRLWRGCGFG YRYTRLPHLL KTKPEDANLP SLQKPCPSTL LQQHMADLLR 1251 1300 ENSP00000328287/1-1314 QGPDVAPSFL NSVLNQLNWA FSEFIGMIQE IQQAAERLER NFVDSRQLKV ENSBTAP00000042771/1-1313 EGPDVAPSFL NSVLNQLNWA FSEFIGMIQE IQQAAERLER NFVDSRQLKV ENSTTRP00000002578/1-1265 EGPDVAPSFL NSVLNQLNWA FSEFIGMIQE IQQAAERLER NFVDSRQLKV BACU002393/1-1204 EGPDVAPSFL NSVLNQLNWA FSEFIGMIQE IQQAAERLER NFVDSRQLKV bmy_06014T0/1-1501 EGPDVAPSFL NSVLNQLNWA FSEFIGMIQE IQQAAERLER NFVDSRQLKV 1301 1350 ENSP00000328287/1-1314 CATCFDLSVS LLRVLEMTIT LVPEIFLDWT RPTSEMLLRR LAQLLNQVLN ENSBTAP00000042771/1-1313 CATCFDLSVS LLRVLEMTIT LVPEIFLDWA RPTSEMLLRR LAQLLNQVLN ENSTTRP00000002578/1-1265 CATCFDLSVS LLRVLEMTIT LVPEIFLDWA QPTSEMLLRR LAQLLNQVLN BACU002393/1-1204 CATCFDLSVS LLRVLEMTIT LVPEIFLDWA QPTSEMLLR- -------LLN bmy_06014T0/1-1501 CATCFDLSVS LLRVLEMTIT LVPEIFLDWA QPTSEMLLRR LAQLLNQVLN 1351 1400 ENSP00000328287/1-1314 RVTAERNLFD RVVTLRLPGL ESVDHYPILV AVTGILVQLL VRGPASEREQ ENSBTAP00000042771/1-1313 RVTAERNLFD RVVTLRLPGL ESVDHYPILV AVTGILVRLL VHGPASGTER ENSTTRP00000002578/1-1265 RVTAERNLFD RVVTLRLPGL ESVDHYPILV AVTGILVRLL VHGPASGTER BACU002393/1-1204 RVTAERNLFD RVVTLRLPGL ESVDHYPILV AVTGILVRLL VHGPASG--- bmy_06014T0/1-1501 RVTAERNLFD RVVTLRLPGL ESVDHYPILV AVTGILVRLL VHGPASGTER 1401 1450 ENSP00000328287/1-1314 ATSVLLADPC FQLRSICYLL GQPEPPAPGT ALPAPDRKRF SLQSYADYIS ENSBTAP00000042771/1-1313 ATSVLLADPC FQLRSISYLL GQPEPPAPGT ALPAPDRKHF SLQSYTDYIN ENSTTRP00000002578/1-1265 ATSVLLADPC FQLRSICYLL GQPEPPTPGT ALPAPDQKRF SLQSYTDYIS BACU002393/1-1204 ---------- ---------- ---------- ---------- ---------- bmy_06014T0/1-1501 ATSVLLADPC FQLRSICYLL GQPEPPTPGT TLPAPDQKRF SLQSYTDYIS 1451 1500 ENSP00000328287/1-1314 ADELAQVEQM LAHLTSASAQ AAAASLPTSE EDLCPICYAH PISAVFQPCG ENSBTAP00000042771/1-1313 VEELAQVEQM LAHLTSASAQ AAAASLPTSE EDLCPICYAH PISAVFQPCG ENSTTRP00000002578/1-1265 VEELAQVEQM LAHLTSASAQ AAAASLPTSE EDLCPICYAH PISAVFQPCG BACU002393/1-1204 ---------- ---------- ---------- ---------- ---------- bmy_06014T0/1-1501 VEELAQVEQM LAHLTSASAQ AAAASLPTSE EDLCPICYAH PISAVFQPCG 1501 1550 ENSP00000328287/1-1314 HKSCKACINQ HLMNNKDCFF CKTTIVSVED WEKGANTSTT SSAA ENSBTAP00000042771/1-1313 HKSCKACIDQ HLMNNKDCFF CKATIVSVED WDKAAHASAT SSAA ENSTTRP00000002578/1-1265 HKSCKACINQ HLMNNKDCFF CKAPHHPI-- ---------- --CA BACU002393/1-1204 ---------- ---------- ---------- ---------- ---- bmy_06014T0/1-1501 HKSCKACINQ HLMNNKDCFF CKATIVSVED WDKAASASAT SSAA