KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:56 2014 Check: 00 .. Name: ENSP00000459501/1-750 Len: 839 Check: 2056 Weight: 1.00 Name: ENSBTAP00000042777/1-737 Len: 839 Check: 1825 Weight: 1.00 Name: ENSTTRP00000007212/1-687 Len: 839 Check: 2342 Weight: 1.00 Name: bmy_08653T0/1-774 Len: 839 Check: 9326 Weight: 1.00 Name: BACU001280/1-790 Len: 839 Check: 1012 Weight: 1.00 // 1 50 ENSP00000459501/1-750 MEFVSGYRDE FLDFTALLFG WFRKFVAERG AVGTSLEGRC RQLEAQIRRL ENSBTAP00000042777/1-737 MEFVSGYRDE FLDFAALLFG WFRKFVAERG AVGTSLEGRW RQLEAQIRRL ENSTTRP00000007212/1-687 MEFVSGYRDE FLDFVALLFG WFRKFVAERG AVRTSPEGCW WQLEAQIRKL bmy_08653T0/1-774 MEFVSGYRDE FLDFAALLFG WFRKFVAERG AVGTSLEGCW RQLEAQIRRL BACU001280/1-790 MEFVSGYRDE FLDFAALLFG WFRKFVAERR AVGTRPEGCW RELEAQIRRL 51 100 ENSP00000459501/1-750 PQDPALWVLH VLPNHSVGIS LGQGAEPGPG PGLGTAWLLG DNPPLHLRDL ENSBTAP00000042777/1-737 PQDPALWVLH VLPNRSVGIS LGQGAEPGPG PGLGAARLLG DEPPLHLRDL ENSTTRP00000007212/1-687 PQDRALWVLH VLPNRSVGIS LGQGAEPGPA PGLGAARLLG DEPPLHLRDL bmy_08653T0/1-774 PQDRALWVLH VLPNRSVGIS LGQGAEPGPA PGLGAARLLG DEPPLHLRDL BACU001280/1-790 PQDRALWVLH VLPNRSVGIS LGQGAEPGPA PGLGAARLLG DEPALHLRDL 101 150 ENSP00000459501/1-750 SPYISFVSLE DGEEGEEEEE EDEEEEKRED GGAGSTEKVE PEEDRELAPT ENSBTAP00000042777/1-737 SPYVSFVSLE EGEEGEEEEE EEEEEENGEE EGAG-TKKVE TEEDGEPAPG ENSTTRP00000007212/1-687 SPYVSFVSL- --EEG----- -------GEE EGAG-TEKVG TEADGKTAPT bmy_08653T0/1-774 SPYVSFVSL- --EDGEEEEE EEEEEENGEE EDTG-TEKVD TEEDGEPAPT BACU001280/1-790 SPYVSFVSL- --EEGEEEEE EEEEGENGEE EDAG-TGKVE TEEDGEPAPT 151 200 ENSP00000459501/1-750 SRESPQETNP PGESEEAARE AGGGKDGCRE DRVENETRPQ KRKGQRSEAA ENSBTAP00000042777/1-737 SREPPREATP PGEPEEAKQE AGGGEDG-KE DRAEDGPGPE KRTGRRGDAA ENSTTRP00000007212/1-687 SRESPQEANP PGEADGAQQE AAGGEVGCQE DRAEDKPGPE RRKGQRSEAA bmy_08653T0/1-774 SRESPQEANP PGEAEETEQE AGGREVGCQE DRAEDKPGPE RRKGQRSEAA BACU001280/1-790 SRDSPQEANP PGEAEETEQE AGGHEVGCQE DRAEDEPGPE RRKGQRSEAA 201 250 ENSP00000459501/1-750 PLHVSCLLLV TDEHGTILGI DLLVDGAQGT ASWGSGTKDL APWAYALLCH ENSBTAP00000042777/1-737 PLHLSCLLLV TDEHGIILGI DLLMEGAQGS TGRGSGAENL APRAYALLCH ENSTTRP00000007212/1-687 PLHLSCLLLV TDEYGTILGI DLLTDGGQGS AGRGSGTQNL APRAYALLCH bmy_08653T0/1-774 PLHLSCLLLV TDEHGTILGI DLLMDGGQGS AGRGSGTQNL APRAYALLCH BACU001280/1-790 PLHLSCILLV TDEHGTILGI DLLMDGGQGS AGRGSGTQNL APRAYALLCH 251 300 ENSP00000459501/1-750 SMACPMGSGD PRKPRQLTVG DARLHRELES LVPRLGVKLA KTPMRT---- ENSBTAP00000042777/1-737 SMVCPMGSGD PRKPRQLTVG DAQLHWELEN LVPRLGVKLA KTPMRT---- ENSTTRP00000007212/1-687 SMACPMGSGD PRKPRKLTVG DAQLHRELEN LVPRLKVKLT KTPMRT---- bmy_08653T0/1-774 SMACPMGSGD PRKPRKLTVG DAQLHRELEN LVPRLRVKLA KTPMRT---- BACU001280/1-790 SMACPMGSGD PRKPRKLTVG DAQLHRELEN LVPRLRVKLA KTPMRTWGPR 301 350 ENSP00000459501/1-750 ---------- ---------- ---------- ---------- --------WG ENSBTAP00000042777/1-737 ---------- ---------- ---------- ---------- --------WG ENSTTRP00000007212/1-687 ---------- ---------- ---------- ---------- --------WG bmy_08653T0/1-774 ---------- ---------- ---------- ---------- --------WG BACU001280/1-790 PGFTFASLRA RTCHVCHRHS FEVKLTPWEL ENLVPRLRVK LAKTPMRTWG 351 400 ENSP00000459501/1-750 PRPGFTFASL RARTCHVCHR HSFEAKLTPC PQCSAVLYCG EACLRADWQR ENSBTAP00000042777/1-737 PRPGFTFASL RARTCHVCHR HSFEVKLTPC PQCSAVLYCG EACLRADWKR ENSTTRP00000007212/1-687 PRPGFTFASL RARNCHVCHR HSFEVKLTPC PQCGAVLYCG EACLQADWKR bmy_08653T0/1-774 PRPGFTFASL QARTCHVCHR HSFEVKLTPC PQCGAVLYCG EACLRADWKR BACU001280/1-790 PRPGFTFASL RARTCHVCHR HSFEVKLTPC PQCGAVLYCG EACLRADWKR 401 450 ENSP00000459501/1-750 CPDDVSHRFW CPRLAAFMER AGELATLPFT YTA------- ---------- ENSBTAP00000042777/1-737 CPDDVSHRFW CPRLAAFMER AGELATLPFT YTA------- ---------- ENSTTRP00000007212/1-687 CPDDVSHRFW CPRLAAFMER AGELATLPFT YTA------- ---------- bmy_08653T0/1-774 CPDDVSHRFW CPRLAAFMER AGELATLPFT YTAGTLRRSG WVGESGTRSL BACU001280/1-790 SPDDVSHRFW CPRLAAFMER AGELATLPFT YTA------- ---------- 451 500 ENSP00000459501/1-750 ---------- ---------- EVTSETFNKE AFLASRGLTR GYWTQLSMLI ENSBTAP00000042777/1-737 ---------- ---------- EVTSETFNKE AFLASRGLTR GYWTQFSMLI ENSTTRP00000007212/1-687 ---------- ---------- EVTSETFNKE AFLASRGLTR GYWTQLSMLI bmy_08653T0/1-774 ELGPQVPGNR ALNPSPHPSP EVTSETFNKE AFLASRGLTR GYWTQLSMLI BACU001280/1-790 ---------- ---------- EVTSETFNKE AFLASRGLTR GYWTQLSMLI 501 550 ENSP00000459501/1-750 PGPGFSRHPR GNTPSLSLLR GGDPYQLLQG DGTALMPPVP PHPPRGVFGS ENSBTAP00000042777/1-737 PGPGAPRHPR GSTPSLSLLL HGDPYQPLQG DGPALMPPVP PDSPRGLFGS ENSTTRP00000007212/1-687 PGPGTLGHPR GSTPSLSVLL NGDPYQLLQG DGPALMPPVP PDPPRSLF-- bmy_08653T0/1-774 PGPGTPGHPR GSTPSLSILL NGDPYQLLQG HGPALMPPVP PDPPRGLFGS BACU001280/1-790 TGPGTPGHPR GSTPSLSILL NGDPYQLLQG HGPALMPPVP PHPPRGLFGS 551 600 ENSP00000459501/1-750 WQDYYTWRGL SLDSPIAVLL TYPLTVYYVI THLVPQSFPE LNIQNKQSLK ENSBTAP00000042777/1-737 WQDYYTWRGL SLDSPMAVLL TYPLTVYYVI THLVPQSFPE LNIQNKQSLK ENSTTRP00000007212/1-687 ---------- ---------- ---------- -------VPE LNIQNKQSLK bmy_08653T0/1-774 WQDYYTWRGL SLDSPMAVLL TYPLTVYYVI THLVPQSFPE LNIQNKQSLK BACU001280/1-790 WQDYYTWRGL SLDSPMAVLL TYPLTVYYVI THLVPQSFPE LNIQNKQSLK 601 650 ENSP00000459501/1-750 IHVVEAGKEF DLVMVFWELL VLLPHVALEL QFVGDGLPPE SDEQHFTLQR ENSBTAP00000042777/1-737 IHVVEAGKEF DLVMVFWELL VLLPHVALEL QFVGDGLPPE SDQQHFTLQR ENSTTRP00000007212/1-687 IHVMEAGKEF DLIMVFWELL VLLPHVALEL QFVGDSLPPE SDQQNFTLQR bmy_08653T0/1-774 IHVVEAGKEF DLIMVFWELL VLLPHVALEL QFVGDSLPPE SDQQHFTLQR BACU001280/1-790 IHVVEAGKEF DLIMVFWELL VLLPHVALEL QFVGDSLPPE SDQQHFTLQR 651 700 ENSP00000459501/1-750 DSLEVSVRPG SGISARPSSG TKEKGGRRDL QIKVSARPYH LFQGPKPDLV ENSBTAP00000042777/1-737 DGPEVSVRPG SGVSARLSSG TKEKGGRRDL QIKVSARPYH LLQGPKPDLV ENSTTRP00000007212/1-687 DDLEVSVRPG SGVSARLSSG TKEKGGRRDL QIKVSARPYH LLQGPKPDLV bmy_08653T0/1-774 DDLEVSVRPG SGVSARLSSG TKEKGGRRDL QIKVSARPYH LLQGPKPDLV BACU001280/1-790 DDLEVSVRPG SGVSARLSSG TKEKGGRRDL QIKVSARPYH LLQGPKPDLV 701 750 ENSP00000459501/1-750 IASPSSLSAG FNSGFALKDT WLRSLPRLQS LRVPAFFTES SEYSCVMDGQ ENSBTAP00000042777/1-737 I--------G FNSGFGLKDT WLSSLPRLQS AG---FFTES SEYGCVMDDQ ENSTTRP00000007212/1-687 I--------G FNSGFGLKDT WLSSLPRLQS LRVPAFFTES SEYGCVMDDQ bmy_08653T0/1-774 I--------G FNSGFGLKDT WLSXLPRLQS LRVPAFFTES SEYGCVMDDQ BACU001280/1-790 I--------G FNSGFSLKDT WLSSLPRLQS LRVPAFFTES SEYGCVMDDQ 751 800 ENSP00000459501/1-750 TMAVATGGGT SPPQPNPFRS PFRLRAADNC MSWYCNAFIF HLVYKPAQGS ENSBTAP00000042777/1-737 TMAVATGGGT SPPQPNPFRS PFRLRAADNC MPWYCNAFIF HLVYKPSQGS ENSTTRP00000007212/1-687 TMAVATGGGT SPPQPNPFRS PFRLRAADNC MPWYCNAFIF HLVYKPPQGS bmy_08653T0/1-774 TMAVATGGGT SPPQPNPFRS PFRLRAADNC MPWYCNAFIF HLIYKPPQGI BACU001280/1-790 TMAVATGGGT SPPQPNPFRS PFRLRAADNC MPWYCNAFIF HLIYKPPQGS 801 850 ENSP00000459501/1-750 GARPAPGPPP PSPTPSAPPA PTRRRRGEKK PGRGARRRK ENSBTAP00000042777/1-737 GARPAPGPVT PTPTPTAPPA PARRRRGEKK PGRGSRRRR ENSTTRP00000007212/1-687 WARPVPGPAP PAPTPTAPPA PARRRRGEKK PGRRARRRR bmy_08653T0/1-774 WARPAPGPAP PAPTPSAPPA PARRRRGEKK PGRGARRR- BACU001280/1-790 WARPAPGPAP PAPTPTAPPA PARRRRGEKK PGRGARRRR