KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:53:57 2014  Check: 00 ..

 Name: ENSP00000259205/1-169     Len:    178  Check:  4235  Weight:  1.00
 Name: ENSBTAP00000042793/1-174  Len:    178  Check:  4404  Weight:  1.00
 Name: ENSTTRP00000011201/1-164  Len:    178  Check:  6302  Weight:  1.00
 Name: bmy_09030T0/1-121         Len:    178  Check:  8298  Weight:  1.00
 Name: BACU017759/1-148          Len:    178  Check:  3137  Weight:  1.00

//


                          1                                                   50
ENSP00000259205/1-169     MRGTPGDADG GGRAVYQS-M CKPITGTIND LNQQVWTLQG QNLVAVPRSD 
ENSBTAP00000042793/1-174  ----MACFLG HDGGIHTSAM DCPRYVVVSD LSQQVWFLQG QILVVVPRSN 
ENSTTRP00000011201/1-164  ----MAEIME ASGPVYIS-M DEPWTGNA-D LNQQAWILKG HTLVTAPLSN 
bmy_09030T0/1-121         ---------- ---------M EKPRVGEVFD LNQQVWFLQG QTLVAVPRSN 
BACU017759/1-148          ---------- ---------M EKPRVGEVFD LNQQVWFLQG QTLVAVPWSN 


                          51                                                 100
ENSP00000259205/1-169     SVTPVTVAVI TCKYPEALEQ GRGDPIYLGI QNPEMCLYCE KVGEQPTLQL 
ENSBTAP00000042793/1-174  NVRPVTVTII PCKYPECLEK DKGIPIYLGI KQPEMCLCCE DVGGKPELQL 
ENSTTRP00000011201/1-164  SVTPVTVTVM PCKNPGSVEE DRGVPIYLGI ENPEMCLYCE DVGGQPKLQL 
bmy_09030T0/1-121         G--------- ---------- ---------- -NPEMWLHCE DVRGQPKLQL 
BACU017759/1-148          DVTPVTVTVA PCKNPGSLEK DKGIPIYLGI QNPEMWLHCE DVGGQPILQL 


                          101                                                150
ENSP00000259205/1-169     KEQKIMDLYG QPEPVKPFLF YRAKTGRTST LESVAFPDWF IASSKRDQPI 
ENSBTAP00000042793/1-174  KNQKIMDLYN QAEPVKPFLF YRQSTGSTST FESVAFPGWF IASSERNQPI 
ENSTTRP00000011201/1-164  KDQKILDLYN RPEPMEPFLF YHGRTGSTST FESVAFPDWF IASSEQGQPI 
bmy_09030T0/1-121         KDRQILDLYN QAKPMKPFLF YHGQTGITST FESVAFPSWF IASSKRGQPI 
BACU017759/1-148          KTP---DLCN QAKPMKPFLF YHVQTDINST FESVAFPSWF IASSKRGQPI 


                          151                                                200
ENSP00000259205/1-169     ILTSELGKSY NTAFELNIND -------- 
ENSBTAP00000042793/1-174  FLTSELGNIY NTAFQLDSKE FSPSNNSL 
ENSTTRP00000011201/1-164  FLTSNLGKMY STAFRIDLDL -------- 
bmy_09030T0/1-121         FLTSDLGRMY STAFHMNLRI -------- 
BACU017759/1-148          FLTSDLGRMY STAFRMNLRI --------