KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:58 2014 Check: 00 .. Name: ENSP00000293780/1-493 Len: 525 Check: 1024 Weight: 1.00 Name: ENSBTAP00000042804/1-491 Len: 525 Check: 7419 Weight: 1.00 Name: ENSTTRP00000000239/1-400 Len: 525 Check: 6793 Weight: 1.00 Name: bmy_08645T0/1-523 Len: 525 Check: 4838 Weight: 1.00 Name: BACU001286/1-436 Len: 525 Check: 4059 Weight: 1.00 // 1 50 ENSP00000293780/1-493 MARAPLGVLL LLGLLGRGVG KNEELRLYHH LFNNYDPGSR PVREPEDTVT ENSBTAP00000042804/1-491 MAGALLCALL LLQLLGRGEG KNEELRLYHY LFDTYDPGRR PVQEPEDTVT ENSTTRP00000000239/1-400 ---------- ---------- ---------- ---------- ---------- bmy_08645T0/1-523 MAGTLLSALL LLQLLGGGEG KNEELRLYHH LFDNYDPGRR PVQKPGDTVT BACU001286/1-436 MAGTLLSALL LLQLLGGGEG KNEELRLYHH LFDNYDPGRR PVQKPGDTVT 51 100 ENSP00000293780/1-493 ISLKVTLTNL ISLNEKEETL TTSVWIGIDW QDYRLNYSKD DFGGIETLRV ENSBTAP00000042804/1-491 ISLKVTLTNL ISLNEKEETL TTSVWIGIDW QDYRLNYSKG DFGGVETLRV ENSTTRP00000000239/1-400 ---------- ---------- ---------- ---------- --GGIETLRV bmy_08645T0/1-523 ITLKVTLTNL ISLNEKEETL TTSVWIGIDW HDYRLNYSKG DFGGIETLRV BACU001286/1-436 ITLKVTLTNL ISLNEKEETL TTNVWIGIDW HDYRLNYSKG DFGGIETLRV 101 150 ENSP00000293780/1-493 PSELVWLPEI VLENNIDGQF GVAYDANVLV YEGGSVTWLP PAIYRSVCAV ENSBTAP00000042804/1-491 PSELVWLPEI VLENNIDGQF GVAYEANVLV SEGGYLSWLP PAIYRSTCAV ENSTTRP00000000239/1-400 PSELVWLPEI VLENNIDGQF GVAYEANVLV SEGGYVSWLP PAIYRSICAV bmy_08645T0/1-523 PSELVWLPEI VLENNIDGQF GVAYEANVLV SEGGYMSWLP PAIYRSICAV BACU001286/1-436 PSELVWLPEI VLENNIDGQF GVAYEANVLV SEGGYVSWLP PAIYRSICAV 151 200 ENSP00000293780/1-493 EVTYFPFDWQ NCSLIFRSQT YNAEEVEFTF AVDNDGKTIN KIDIDTEAYT ENSBTAP00000042804/1-491 EVTYFPFDWQ NCSLVFRSQT YNAEEVEFVF AVDDEGKTIS KIDIDTEAYT ENSTTRP00000000239/1-400 EVTYFPFDWQ NCSLVFRSQT YNAEEVELVF AVDDDGDTIS NIDIDTEAYT bmy_08645T0/1-523 EVTYFPFDWQ NCSLVFRSQT YNAEEVELVF AVDDDGDTIS NIDIDTEAYT BACU001286/1-436 EVTYFPFDWQ NCSLVFRSQT YSAEEVELAF AVDDDGDTIS NIDIDTEAYT 201 250 ENSP00000293780/1-493 ENGEWAIDFC PGVIRRHHGG ATDGPGETDV IYSLIIRRKP LFYVINIIVP ENSBTAP00000042804/1-491 ENGEWAIDFC PGVIRRHDGD SAGGPGETDV IYSLIIRRKP LFYVINIIVP ENSTTRP00000000239/1-400 ENGEWAIDFC PGVIRRHDGG SNDGPGDTEV IYTLIIRRKP LFYVINVIVP bmy_08645T0/1-523 ENGEWAINFC PGVIRRHDGG SADGPGDTEV IYTLIIRRKP LFYVINIIVP BACU001286/1-436 ENGEWAINFC PGVIRRHDGG SADGPGDTEV IYTLIIRRKP LFYVINIIVP 251 300 ENSP00000293780/1-493 CVLISGLVLL AYFLPAQAGG QKCTVSINVL LAQTVFLFLI AQKIPETSLS ENSBTAP00000042804/1-491 CVLISGLVLL AYFLPAQAGG QKCTVSINVL LAQTVFLFLI AQKTPETSLS ENSTTRP00000000239/1-400 CVLISGLVLL AYFLPAQAGG QKCTVSINVL LAQTVFLFLI AQKIPETSLS bmy_08645T0/1-523 CVLISGLVLL AYFLPAQAGG QKCTVSINVL LAQTVFLFLI AQKIPETSLS BACU001286/1-436 CVLISGLVLL AYFLPAQAGG QKCTVSINVL LAQTVFLFLI AQKIPETSLS 301 350 ENSP00000293780/1-493 VPLLGRFLIF VMVVATLIVM NCVIVLNVSQ RTPTTHAMSP RLRHV----- ENSBTAP00000042804/1-491 VPLLGRYLIF VMVVATLIVM NCVIVLNVSL RTPTTHAMSP RLRYV----- ENSTTRP00000000239/1-400 VPLLGRYLIF VMVVATLIVM NCVIVLNVSC RTPTTHAMSP RLRHV----- bmy_08645T0/1-523 VPLLGRYLIF VMVVATXIVM NCVIVLNVSY RTPTTHAMSP RLRHVSTVCV BACU001286/1-436 VPLLGRYLIF VMVVATLIVM NCVIVLNVSC RTPTTHAMSP RLRHV----- 351 400 ENSP00000293780/1-493 ---------- ---------- -------LLE LLPRLLGSPP PPEAPRAASP ENSBTAP00000042804/1-491 ---------- ---------- -------LLE LLPQLLGSGA PPEIPRAASP ENSTTRP00000000239/1-400 ---------- ---------- -------LLE LLPQLLGSGA PPEVSRAASP bmy_08645T0/1-523 GGGSGREAGL RANLPAAPPR PAARPQVLLE LLPQLLGSGA LPEVPRAASP BACU001286/1-436 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000293780/1-493 PRRASSVGLL LRAEELILKK PRSELVFEGQ RHRQGTWTAA FCQSLGAAAP ENSBTAP00000042804/1-491 PRRASSLGLL LRAEELILKK PRSELVFEQQ RHRHGTWTAT LCQNLGAAAP ENSTTRP00000000239/1-400 PRRASSLGLL LRAEELILKK PRSELMFAGQ RHRHRTI-AA LCQSLGAAAP bmy_08645T0/1-523 PRRASSLGLL LLAEELILKK LRSELMFEGQ RYRHGTWTAA LCQNLGAAAP BACU001286/1-436 ---------- ---------- ---STVWGG- --------AA LCQSLGAAAP 451 500 ENSP00000293780/1-493 EVRCCVDAVN FVAESTRDQE ATGEEVSDWV RMGNALDNIC FWAALVLFSV ENSBTAP00000042804/1-491 EIRCCVDAVN FVASSTRDQE ATGEEVSDWV RMGKALDSIC FWAALVLFLV ENSTTRP00000000239/1-400 EIRCCVDAVN FVAESTRDQE ATGEEVSDWV RMGKALDNIC FWAALVLFLV bmy_08645T0/1-523 EIRCCVDAVN FVAESTRDQE ATGKEVSDWV RMGKALDNIC FWAALVLFLV BACU001286/1-436 EIRCCVDAVN FLAESTRDQE ATGKEVSDWV RMGKALDNIC FWAALVLFLI 501 550 ENSP00000293780/1-493 GSSLIFLGAY FNRVPDLPYA PCIQP ENSBTAP00000042804/1-491 GSSLIFLGAY FNRVPQLPYP PCM-- ENSTTRP00000000239/1-400 GSSLIFLGAY FNQVPELPYP PCMLE bmy_08645T0/1-523 GSSLIFLGAY FNQVPELPYP PCM-- BACU001286/1-436 GSSLIFLGAY FNQVPELPYP PCM--