KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:00 2014 Check: 00 .. Name: BACU000816/1-413 Len: 422 Check: 8753 Weight: 1.00 Name: ENSBTAP00000042843/1-323 Len: 422 Check: 1574 Weight: 1.00 Name: ENSP00000264908/1-323 Len: 422 Check: 3504 Weight: 1.00 Name: bmy_05827T0/1-293 Len: 422 Check: 6385 Weight: 1.00 Name: ENSTTRP00000000970/1-322 Len: 422 Check: 5369 Weight: 1.00 // 1 50 BACU000816/1-413 MQNPRVSVIS RERWDIMASI WVGHRGTMRD YPGFSASVDA EAIHKAIRGI ENSBTAP00000042843/1-323 ---------- ------MASI WVGKRGTIRD YAGFNPSVDA EAIRKAIRGI ENSP00000264908/1-323 ---------- ------MASI WVGHRGTVRD YPDFSPSVDA EAIQKAIRGI bmy_05827T0/1-293 ---------- ---------- -------MXD YPGFSASVDA EAIHKAIRGI ENSTTRP00000000970/1-322 ---------- ------VCKL WVGHQGTMRD YPSFSASGDA EAIHKAIRGI 51 100 BACU000816/1-413 GTDEKTLISI LTERSNAQRQ LIAKEYQAAY GKELKDDLKG DLSGHFKCLM ENSBTAP00000042843/1-323 GTDEKTLISI LTERTNAQRL LIAKEYQALC GKELKDDLKG DLSGHFKHLM ENSP00000264908/1-323 GTDEKMLISI LTERSNAQRQ LIVKEYQAAY GKELKDDLKG DLSGHFEHLM bmy_05827T0/1-293 GTDEKTLISI LTERSNAQRQ LIAKEYQAAY GKELKDDLKG DLSGHFKCLM ENSTTRP00000000970/1-322 GTDEKALISI LTERSNAQRQ LIAKEYQAAY GRELKDDLKG DLSGHFKCLM 101 150 BACU000816/1-413 VALVTPPAVF DAKQLKKSMK GTGTNEDALI EILTTRTSRQ MKEIGQAYYT ENSBTAP00000042843/1-323 VALVTPPAVF DAKQLKKSMK GMGTNEDALI EILTTRTSKQ MQEIGHAYYT ENSP00000264908/1-323 VALVTPPAVF DAKQLKKSMK GAGTNEDALI EILTTRTSRQ MKDISQAYYT bmy_05827T0/1-293 VALVTPPAVF DAKQLKKSMK GXGTNEDALI EILTTRTSRQ MKEIGQAYYT ENSTTRP00000000970/1-322 VALVTPPAVF DAKQLKKSMK GTGTNEDALI EILTTRTSRQ MKEIGQAYYT 151 200 BACU000816/1-413 VYKKSLGDEI SSETSGDFRK ALLTLADGRR DEGLKVDEQL AKEDAQ---- ENSBTAP00000042843/1-323 AYKKSLGDEI SSETSGDFRK ALLILANGRR DESLKVDEQL ARKDAQILYN ENSP00000264908/1-323 VYKKSLGDDI SSETSGDFRK ALLTLADGRR DESLKVDEHL AKQDAQILYK bmy_05827T0/1-293 VYKKSLGDEI SSETSGDFRK ALLTLAD--- ---------- ------ILYN ENSTTRP00000000970/1-322 VYKKSLGDEI SSETSGDFRK ALLTLADGRR DEGLKVDEQL AKEDAQILYN 201 250 BACU000816/1-413 -GA---GTDE FTLNRIMVSR SEIDLLDIRA EFKKQYGYSL HSAIKRRPYR ENSBTAP00000042843/1-323 AGEKRWGTDE DAFTDILCLR S---FPQLKL TFDE------ --------YR ENSP00000264908/1-323 AGENRWGTDE DKFTEILCLR S---FPQLKL TFDE------ --------YR bmy_05827T0/1-293 AGENKWGTDE DTFTEILCLR S---FPQLKL TFDV------ --------YR ENSTTRP00000000970/1-322 AGENKWGTDE DTFTEILCLR S---FPQLKL TFDE------ --------YR 251 300 BACU000816/1-413 RRRRPPYLVQ RPYGRRAQRS NPPVQREVME GADNQGAGEQ GRPVTQNMYR ENSBTAP00000042843/1-323 NIS------- ---------- ----QKDIED SIKGELSGH- ----FEDLLL ENSP00000264908/1-323 NIS------- ---------- ----QKDIVD SIKGELSGH- ----FEDLLL bmy_05827T0/1-293 NIS------- ---------- ----QKDIED SIKGELSGH- ----FEDLLL ENSTTRP00000000970/1-322 NIS------- ---------- ----QKDIED SIKGELSGH- ----FEDLLL 301 350 BACU000816/1-413 GYRPPFRRGP PRQRQRREDG SEEDKENRGD ETQGQQLPQR RTAATSITGA ENSBTAP00000042843/1-323 AIVRCARNTP A--------- ---------- -----FLAER LYRALKGAGT ENSP00000264908/1-323 AIVNCVRNTP A--------- ---------- -----FLAER LHRALKGIGT bmy_05827T0/1-293 AIVCCARNTP A--------- ---------- -----FLAKR LHQALKGAGT ENSTTRP00000000970/1-322 AIVCCARNTP A--------- ---------- -----FLAKR LHQALKXXXX 351 400 BACU000816/1-413 DARKTLNHKM AKRQKQQIYQ LRIRPLPRLR RAGLSKCW-L TISTIIRFRH ENSBTAP00000042843/1-323 DEF-TLNRIM VSRSEIDLLD IR-------- -AEFKKLSGY SLYSAIK--- ENSP00000264908/1-323 DEF-TLNRIM VSRSEIDLLD IR-------- -TEFKKHYGY SLYSAIK--- bmy_05827T0/1-293 DEF-TLNRIM VSRSEIDLLD IR-------- -AEFKKQYGY SLHSAIE--- ENSTTRP00000000970/1-322 XXX-XXXXXX XSRSEIDLLD IR-------- -AEFKKQYGY S-HSAIK--- 401 450 BACU000816/1-413 PTRRNEYEIP AIRNEQKIGA KD ENSBTAP00000042843/1-323 SDTSGDYEIT LLKI---CGG DD ENSP00000264908/1-323 SDTSGDYEIT LLKI---CGG DD bmy_05827T0/1-293 SDTSGDYAIT LVKI---CGG DD ENSTTRP00000000970/1-322 SDTSGDYAIT LVKI---CGG DD