KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:02 2014 Check: 00 .. Name: ENSTTRP00000005599/1-1097 Len: 1148 Check: 1013 Weight: 1.00 Name: ENSP00000378917/1-1097 Len: 1148 Check: 1330 Weight: 1.00 Name: ENSBTAP00000042875/1-1079 Len: 1148 Check: 930 Weight: 1.00 Name: bmy_00794T0/1-1082 Len: 1148 Check: 9304 Weight: 1.00 Name: BACU011900/1-957 Len: 1148 Check: 3231 Weight: 1.00 // 1 50 ENSTTRP00000005599/1-1097 ---------- ---------- ---------- ---------- ----MLKPQP ENSP00000378917/1-1097 ---------- ---------- ---------- ---------- ----MLKPQP ENSBTAP00000042875/1-1079 ---------- ---------- ---------- ---------- ----MLKPQP bmy_00794T0/1-1082 PRCARTARAP ASQSPSFPAH SGGGPAPASS LPPFPLIPLP DAAIMLKPQP BACU011900/1-957 MLC------- ---------- ---------- ---------- ---LMTRPFS 51 100 ENSTTRP00000005599/1-1097 PQQTSQPQQP PPTQQAVARR PPGGTSPPNG GLPGPLASTS APPGPPAAAS ENSP00000378917/1-1097 LQQPSQPQQP PPTQQAVARR PPGGTSPPNG GLPGPLATSA APPGPPAAAS ENSBTAP00000042875/1-1079 PQQTSQPQQP PPTQQAVARR PPGGTSPPNG GLPGSLASTS APPGPPAAAS bmy_00794T0/1-1082 PQQTSQPQQP PPTQQAVARR PPGGTSPPNG GLPGPLASTS APPGPPAAAS BACU011900/1-957 S--------- ---------- ---------- ---------- --PG------ 101 150 ENSTTRP00000005599/1-1097 PCLGPAAAAG SGLRRGAESI LA--PPPPQQ QHQERPGAAA IGSARGQSTG ENSP00000378917/1-1097 PCLGPVAAAG SGLRRGAEGI LAPQPPPP-Q QHQERPGAAA IGSARGQSTG ENSBTAP00000042875/1-1079 PCLGPAAAAG SGLRRGAEGI LAPQPPAPQQ QHQERPGAAA IGSARGQSTG bmy_00794T0/1-1082 PCLGPAAAAG SGLRRGAEGI LA--PPPPQQ QHQERPGAAA IGSARGQSTG BACU011900/1-957 ---------- ---------- ---------- ---------- -----GQSTG 151 200 ENSTTRP00000005599/1-1097 KGPPQSPVFE GVYNNSRMLH FLTAVVGSTC DVKVKNGTTY EGIFKTLSSK ENSP00000378917/1-1097 KGPPQSPVFE GVYNNSRMLH FLTAVVGSTC DVKVKNGTTY EGIFKTLSSK ENSBTAP00000042875/1-1079 KGPPQSPVFE GVYNNSRMLH FLTAVVGSTC DVKVKNGTTY EGIFKTLSSK bmy_00794T0/1-1082 KGPPQSPVFE GVYNNSRMLH FLTAVVGSTC DVKVKNGTTY EGIFKTLSSK BACU011900/1-957 KGPPQSPVFE GVYNNSRMLH FLTAVVGSTC DVKVKNGTTY EGIFKTLSSK 201 250 ENSTTRP00000005599/1-1097 FELAVDAVHR KASEPAGGPR REDIVDTMVF KPSDVMLVHF RNVDFNYATK ENSP00000378917/1-1097 FELAVDAVHR KASEPAGGPR REDIVDTMVF KPSDVMLVHF RNVDFNYATK ENSBTAP00000042875/1-1079 FELAVDAVHR KVSEPAGGPR REDIVDTMVF KPSDVMLVHF RNVDFNYATK bmy_00794T0/1-1082 FELAVDAVHR KASEPAGGPR REDIVDTMVF KPSDVMLVHF RNVDFNYATK BACU011900/1-957 FELAVDAVHR KALEPAGGPR REDIVDTMVF KPSDVMLVHF RNVDFNYATK 251 300 ENSTTRP00000005599/1-1097 DKFTDSAIAM NSKVNGEHKE KVLQRWEGGD SNSDDYDLES DMSNGWDPNE ENSP00000378917/1-1097 DKFTDSAIAM NSKVNGEHKE KVLQRWEGGD SNSDDYDLES DMSNGWDPNE ENSBTAP00000042875/1-1079 DKFTDSAIAM NSKVNGEHKE KVLQRWEGGD SNSDDYDLES DMSNGWDPNE bmy_00794T0/1-1082 DKFTDSAIAM NSKVNGEHKE KVLQRWEGGD SNSDDYDLES DMSNGWDPNE BACU011900/1-957 DKFTDSAIAM NSKVNGEHKE KVLQRWEGGD SNSDDYDLES DMSNGWDPNE 301 350 ENSTTRP00000005599/1-1097 MFKFNEENYG IKTTYDSSLS SYTVPLEKDN SEEFRQRELR AAQLAREIES ENSP00000378917/1-1097 MFKFNEENYG VKTTYDSSLS SYTVPLEKDN SEEFRQRELR AAQLAREIES ENSBTAP00000042875/1-1079 MFKFNEENYG VKTTYDSSLS SYTVPLEKDN SEEFRQRELR AAQLAREIES bmy_00794T0/1-1082 MFKFNEENYG IKTTYDSSLS SYTVPLEKDN SEEFRQRELR AAQLAREIES BACU011900/1-957 MFKFNEENYG IKTTYDSSLS SYTVPLEKDN SEEFRQRELR AAQLAREIES 351 400 ENSTTRP00000005599/1-1097 SPQYRLRIAM ENDDGRTEEE KHSAVQRQGS GRESPSLASR EGKYIPLPQR ENSP00000378917/1-1097 SPQYRLRIAM ENDDGRTEEE KHSAVQRQGS GRESPSLASR EGKYIPLPQR ENSBTAP00000042875/1-1079 SPQYRLRIAM ENDDGRTEEE KHSAVQRQGS GRESPSLAAR EGKYIPLPQR bmy_00794T0/1-1082 SPQYRLRIAM ENDDGRTEEE KHSAVQRQGS GRESPSLASR EGKYIPLPQR BACU011900/1-957 SPQYRLRIAM ENDDGRTEEE KHSAVQRQGS GRESPSLASR EGKYIPLPQR 401 450 ENSTTRP00000005599/1-1097 VREGPRGGVR CSSSRGGRPG LSSLPPRGPH HLDNSSPGPG SETRGINGGP ENSP00000378917/1-1097 VREGPRGGVR CSSSRGGRPG LSSLPPRGPH HLDNSSPGPG SEARGINGGP ENSBTAP00000042875/1-1079 VREGPRGGVR CSSSRGGRPG LSSLPPRGPH HLDNSSPGPG SEARGINGGP bmy_00794T0/1-1082 VREGPRGGVR CSSSRGGRPG LSSLPPRGPH HLDNSSPGPG SETRGINGGP BACU011900/1-957 VREGPRGGVR CSSSRGGRPG LSSLPPRGPH HLDNSSPGPG SETRGINGGP 451 500 ENSTTRP00000005599/1-1097 SRMSPKAQRP LRGAKTLSSP SSRPSGEASV PPPPAVGRMY PPRSPKSAAP ENSP00000378917/1-1097 SRMSPKAQRP LRGAKTLSSP SNRPSGETSV PPPPAVGRMY PPRSPKSAAP ENSBTAP00000042875/1-1079 SRMSPKAQRP LRGAKTLSSP SSRPSGEASV PPPPAVGRMY PPRSPKSAAP bmy_00794T0/1-1082 SRMSPKAQRP LRGAKTLSSP SSRPSGEASV PPPPAVGRMY PPRSPKSAAP BACU011900/1-957 SRMSPKAQRP LRGAKTLSSP SSRPSGEASV PPPPA-GRMY PPRSPKSAAP 501 550 ENSTTRP00000005599/1-1097 APISASCPEP PIGSAVPTSS ASIPVTSSVG DPGVGSISPA SPKISLAPTD ENSP00000378917/1-1097 APISASCPEP PIGSAVPTSS ASIPVTSSVS DPGVGSISPA SPKISLAPTD ENSBTAP00000042875/1-1079 APISASCPEP PMGSAVPTSS ASIPVTSAVG DPGVGSVSPA SPKISLAPTD bmy_00794T0/1-1082 APISASCPEP PIGSAVPTSS ASIPVTSSVG DPGVGSISPA SPKISLAPTD BACU011900/1-957 APISASCPEP PIGSAVPTSS ASIPVTSSVG DPGVGSISPA SPKISLAPTD 551 600 ENSTTRP00000005599/1-1097 VKELPAKEPG RTLESQELSR IAGKVPGLQN EQKRFQLEEL RKFGAQFKLQ ENSP00000378917/1-1097 VKELSTKEPG RTLEPQELAR IAGKVPGLQN EQKRFQLEEL RKFGAQFKLQ ENSBTAP00000042875/1-1079 VKELPAKEPG RTLESQELSR IAAKVPGLQN EQKRFQLEEL RKFGAQFKLQ bmy_00794T0/1-1082 VKELPAKEPG RTLESQELSR IAGKVPGLQN EQKRFQLEEL RKFGAQFKLQ BACU011900/1-957 VKELPAKEPG RTLESQELSR IAGKVPGLQN EQKRFQLEEL RKFGAQFKLQ 601 650 ENSTTRP00000005599/1-1097 PSSSPETSLD PFPPRILKEE AKGKEKEVDG LLASEPMGSP VSSKTESISD ENSP00000378917/1-1097 PSSSPENSLD PFPPRILKEE PKGKEKEVDG LLTSEPMGSP VSSKTESVSD ENSBTAP00000042875/1-1079 PSSSPETSLD PFPPRILKEE AKGKEKEVDG LLASEPLGSP VSSKAESVSD bmy_00794T0/1-1082 PSSSPETSLD PFPPRILKEE AKGKEKEVDS LLASEPMGSP VSSKTESISD BACU011900/1-957 PSSSPETSLD PFPPRILKEE AKGKEKEVDS LLASEPMGSP VSSKTESISD 651 700 ENSTTRP00000005599/1-1097 KEDKPPLPPA GGAEGPDQPP PPCPSQTSSP PVGLIKGDDK DEGPVAEQVK ENSP00000378917/1-1097 KEDKPPLAPS GGTEGPEQPP PPCPSQTGSP PVGLIKGEDK DEGPVAEQVK ENSBTAP00000042875/1-1079 KEDKLPLPAA GGAEGPEQPP APCPSQTGSP PVGLIKGDDK DEGPVAEQVK bmy_00794T0/1-1082 KEDKPPLPPA GGTEGPDQPP PPCPSQTSSP PVGLIKGDDK DEGPVAEQVK BACU011900/1-957 KEDKPPLPPA GGAEGPDQPP PPCPSQNSSP PVGLIKGDDK DEGPVAEQVK 701 750 ENSTTRP00000005599/1-1097 KSTLNPNAKE FNPTKPLLSV NKSTSTPTSP GPRTHSTPSI PVLTAGQSGL ENSP00000378917/1-1097 KSTLNPNAKE FNPTKPLLSV NKSTSTPTSP GPRTHSTPSI PVLTAGQSGL ENSBTAP00000042875/1-1079 KSTLNPNAKE FNPTKPLLSV NKSTSTPTSP GPRTHSTPSI PVLTAGQSGL bmy_00794T0/1-1082 KSTLNPNAKE FNPTKPLLSV NKSTSTPTSP GPRTHSTPSI PVLTAGQSGL BACU011900/1-957 KSTLNPNAKE FNPTKPLLSV NKSTSTPTSP GPRTHSTPSI PVLTAGQSGL 751 800 ENSTTRP00000005599/1-1097 YSPQYISYIP QIHMGPAVQA PQMYPYPVSN SVPGQQGKYR GAKXXXXXXX ENSP00000378917/1-1097 YSPQYISYIP QIHMGPAVQA PQMYPYPVSN SVPGQQGKYR GAKGSLPPQR ENSBTAP00000042875/1-1079 YSPQYISYIP QIHMGPAVQA PQMYPYPVSN SVPGQQGKYR GAKGSLPPQR bmy_00794T0/1-1082 YSPQYISYIP QIHMGPAVQA PQMYPYPVSN SVPGQQGKYR GAKGSLPPQR BACU011900/1-957 YSPQYISYIP QIHMGPAVQA PQMYPYPVSN SVPGQQGKYR GAKGSLPPQR 801 850 ENSTTRP00000005599/1-1097 XXXXXXXXXX XXXX-XXXXX XXXXXXXXXX XXXXXXXXQQ FPGQPAMMQP ENSP00000378917/1-1097 SDQHQPASAP PMMQ-AAAAA GPPLVAATPY SSYIPYNPQQ FPGQPAMMQP ENSBTAP00000042875/1-1079 SDQHQPASAP PMMQAAAAAA GPPLVAATPY SSYIPYNPQQ FPGQPAMMQP bmy_00794T0/1-1082 SDQHQPASAP PMMQ-AAAAA GPPLVAATPY SSYIPYNPQQ FPGQPAMMQP BACU011900/1-957 SDQHQPASAP PMMQ-AAAAA GPPLVAATPY SSYIPYNPQQ FPGQPAMMQP 851 900 ENSTTRP00000005599/1-1097 MAHYPSQPVF APMLQSNPRM LTSGSHPQAI VSSSTPQYPS AEQPTPQALY ENSP00000378917/1-1097 MAHYPSQPVF APMLQSNPRM LTSGSHPQAI VSSSTPQYPS AEQPTPQALY ENSBTAP00000042875/1-1079 MAHYPSQPVF APMLQSNPRM LTSGSHPQAI VSSSTPQYPS AEQPTPQALY bmy_00794T0/1-1082 MAHYPSQPVF APMLQSNPRM LTSGSHPQAI VSSSTPQYPS AEQPTPQALY BACU011900/1-957 MAHYPSQPVF APMLQSNPRM LTSGSHPQAI VSSSTPQYPS AEQPTPQALY 901 950 ENSTTRP00000005599/1-1097 -ATVHQSYPH HATQLHAHQP QPATTPTGSQ PQSQHAAPSP VQHQAGQAPH ENSP00000378917/1-1097 -ATVHQSYPH HATQLHAHQP QPATTPTGSQ PQSQHAAPSP VQHQAGQAPH ENSBTAP00000042875/1-1079 VATVHQSYPH HATQLHAHQP QPATTPTGSQ PPSQHAAPSP VQHQAGQAPH bmy_00794T0/1-1082 -ATVHQSYPH HATQLHAHQP QPATTPTGSQ PQSQHAAPSP VQHQAGQAPH BACU011900/1-957 -ATVHQSYPH HATQLHAHQP QPATTPTGSQ PQSQHAAPSP VQHQAGQAPH 951 1000 ENSTTRP00000005599/1-1097 LGSGQPQQNL YHPGALTGTP PSLPPGPSAQ SPQSSFPQPA AVYAIHAHQQ ENSP00000378917/1-1097 LGSGQPQQNL YHPGALTGTP PSLPPGPSAQ SPQSSFPQPA AVYAIH-HQQ ENSBTAP00000042875/1-1079 LGSGQPQQNL YHPGALTGTP PSLPPGPSAQ SPQSSFPQPA AVYAIHAHQQ bmy_00794T0/1-1082 LGSGQPQQNL YHPGALTGTP PSLPPGPSAQ SPQSSFPQPA AVYAIHAHQQ BACU011900/1-957 LGSGQPQQNL YHPGALTGTP PSLPPGPSAQ SPQSSFPQPA AVYAIHAHQQ 1001 1050 ENSTTRP00000005599/1-1097 LPHGFTNMAH VTQAHVQTGI TAAPPPHPGA PHPPQVMLLH PPQSHGGPPQ ENSP00000378917/1-1097 LPHGFTNMAH VTQAHVQTGI TAAPPPHPGA PHPPQVMLLH PPQSHGGPPQ ENSBTAP00000042875/1-1079 LPHGFTNMAH VTQAHVQTGI TAAPPPHPGA PHPPQVMLLH PPQSHGGPPQ bmy_00794T0/1-1082 LPHGFTNMAH VTQAHVQTGI TAAPPPHPGA PHPPQVMLLH PPQSHGGPPQ BACU011900/1-957 LPHGFTNMAH VTQAHVQTGI TAAPPPHPGA PHPPQVMLLH PPQSHGGPPQ 1051 1100 ENSTTRP00000005599/1-1097 GAVPQSGVPA LSASTPSPYP YIGHPQGE-Q PGQAPGFPGG ADDRI--LCR ENSP00000378917/1-1097 GAVPQSGVPA LSASTPSPYP YIGHPQGE-Q PGQAPGFPGG ADDRI--LCR ENSBTAP00000042875/1-1079 GAVPQSGVPA LSASTPSPYP YIGHPQGE-Q PGQAPGFPGG ADDRIREFSL bmy_00794T0/1-1082 GAVPQSGVPA LSASTPSPYP YIGHPQ---- ---------- ---------- BACU011900/1-957 GAVPQSGVPA LSASTPSPYP YIGHPQVQSH PSQQLPF--- ---------- 1101 1150 ENSTTRP00000005599/1-1097 VGRSHSRRRQ GLAPGSVLCF PPSSLSCDPA APFPTASPAL SDPDCLLT ENSP00000378917/1-1097 VGRSHSRRRQ GLAPGSVLCF PPSSLSCDPA APLPTASPAL SDPDCLLT ENSBTAP00000042875/1-1079 AGGIWHGRAD GLQVGQDARV LGGE------ ---------- -------- bmy_00794T0/1-1082 ---------- ---------- ---------- --------AL SDPDCLLT BACU011900/1-957 ---------- ---------H PPGN------ ---------- --------