KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:11 2014 Check: 00 .. Name: BACU001115/1-749 Len: 1005 Check: 7960 Weight: 1.00 Name: bmy_09529T0/1-705 Len: 1005 Check: 5626 Weight: 1.00 Name: ENSBTAP00000042910/1-823 Len: 1005 Check: 5555 Weight: 1.00 Name: ENSP00000367059/1-854 Len: 1005 Check: 3131 Weight: 1.00 Name: ENSTTRP00000005977/1-765 Len: 1005 Check: 6545 Weight: 1.00 // 1 50 BACU001115/1-749 ---------- ---------- ---------- ---------- ---------- bmy_09529T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042910/1-823 MALEQAMQAA RQGDLDVLRS LHAARLLGPS LRDPLDALPV HHAARAGKLH ENSP00000367059/1-854 MALEQALQAA RQGELDVLRS LHAAGLLGPS LRDPLDALPV HHAARAGKLH ENSTTRP00000005977/1-765 ---------- ---------- ---------- ---------- ---------- 51 100 BACU001115/1-749 MSAFSSFEKR ELCARPRRRG TEKGTN---- ---------- KTDLRQAADR bmy_09529T0/1-705 ---MCIAERR LPGGGGEQAR GPPPPP---- ---------- REAGTRLSPE ENSBTAP00000042910/1-823 CLRFLVEEAG LPAAARARNG ATPAHDAAAT GHLACLQLLL SQGGCGVHDR ENSP00000367059/1-854 CLRFLVEEAA LPAAARARNG ATPAHDASAT GHLACLQWLL SQGGCRVQDK ENSTTRP00000005977/1-765 ---------- ---------- ---------- --------LL SQGGCRVQDR 101 150 BACU001115/1-749 DNSGATVLHL AARFGHPEVV DWLLRHGGGD PTVATDTGAL PVHYAAAKGD bmy_09529T0/1-705 G--------- ---VGQPGPA TRFFSNPPSQ PSRA------ PRKRARGEES ENSBTAP00000042910/1-823 DNSGATVLHL AARFGHPEVV NWLLRHGGGN PTMATDTGAL PVHYAAAKGD ENSP00000367059/1-854 DNSGATVLHL AARFGHPEVV NWLLHHGGGD PTAATDMGAL PIHYAAAKGD ENSTTRP00000005977/1-765 DNSGATVLHL AARFGHPEVV NWLLRHGGGD PTVATDTGAL PLHYAAAKGD 151 200 BACU001115/1-749 FPSLRLLVGH -----HPEGV NAQTKNGATP LYLACQEGHL EATQYLVQEC bmy_09529T0/1-705 FGGGRALRAH GGCCVFRRGV NAQTKNGATP LYLACQEGHL EVTQYLVQEC ENSBTAP00000042910/1-823 FPSLRLLVRS -----HPEGV NAQTKNGATP LYLACQEGHL EVTQYLVQEC ENSP00000367059/1-854 FPSLRLLVEH -----YPEGV NAQTKNGATP LYLACQEGHL EVTQYLVQEC ENSTTRP00000005977/1-765 FPSLRLLVGH -----HPEGV NAQTKNGATP LYLACQEGHL EVTQYLVQEC 201 250 BACU001115/1-749 GADPHLSAHD GMTPLHAAAQ MGHSPVIVWL ---------- ---------- bmy_09529T0/1-705 GADPHLRAHD GMTPLHAAAQ MGHSPVIVWL VSS------- ---------- ENSBTAP00000042910/1-823 DADPHLSAHD GMTPLHAAAR ARPRPALTSS SPFSAASCSG VPPHRSATIS ENSP00000367059/1-854 GADPHARAHD GMTPLHAAAQ MGHSPVIVWL VSCTDVSLSE QDKDGATAMH ENSTTRP00000005977/1-765 GADPHLSAHD GMTPLHAAAQ MGHSPVIVWL VSCTDVSLSE QDKDGATAMH 251 300 BACU001115/1-749 ---------- ---------- ---------- ---------- --CCQIL--V bmy_09529T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042910/1-823 PPCNRSQLST LAWPRLAAKC MAVDHWGSFP LRTSEIVWGW GEQCLLMEAV ENSP00000367059/1-854 FAASRGHTKV LSWLLLHGGE ISADLWGGTP LHDAAEN-GE LECCQIL--V ENSTTRP00000005977/1-765 FAASRGHAKV LSWLLLHGGE ISADLWGGTP LHDAAEN-GE LECCQIL--V 301 350 BACU001115/1-749 VNGAELDVRD RDGYTAADLA DYNGHSHCTR YLRTVENLSV EHRVLSRDPS bmy_09529T0/1-705 ---------- ---------- ---GTGR--- ---------- ---------- ENSBTAP00000042910/1-823 AAGNEQTISA GQGW--ASLA GGSGHGQGQR QWASSPTQSV EHRVLSRDPS ENSP00000367059/1-854 VNGAELDVRD RDGYTAADLS DFNGHSHCTR YLRTVENLSV EHRVLSRDPS ENSTTRP00000005977/1-765 VNGAELDVRD RDGYTAADLA DYNGHSHCTR YLRTVENLSV EHRVLSRDPS 351 400 BACU001115/1-749 ADLETKQPDS GMSSPNTTMS VQPPNFDLSS PTSTLSNYDS CSSSHSSIKG bmy_09529T0/1-705 ---------- GMSSPNTTMS VQPPNFDLSS PTSTLSNYDS CSSSHSSIKG ENSBTAP00000042910/1-823 TDLETKQPDS GMSSPNTTMS VQRPNFDLSS PTSTLSNYDS CSSGHSSVKG ENSP00000367059/1-854 AELEAKQPDS GMSSPNTTVS VQPLNFDLSS PTSTLSNYDS CSSSHSSIKG ENSTTRP00000005977/1-765 ADLETKQPDS GMSSPNTTTS VQPPNFDLSS PASTLSNYGS CSSGHSSIKG 401 450 BACU001115/1-749 RCPLHGLPST RAADIQSYMD MLSPEPGLPR SRMERPKAPP PPPSFPPLPS bmy_09529T0/1-705 RRPPHGLPST RAADIQSYMD MLSPEPGLPR SRMERPKAPP PPPSFPPPPS ENSBTAP00000042910/1-823 QRSVRGVPSP RAADIQSYMD MLSPEPDLPR GKMEKTKAPP PPPGFPPPPP ENSP00000367059/1-854 QHPPCGLSSA RAADIQSYMD MLNPELGLPR GTIGKPTPPP PPPSFPPPPP ENSTTRP00000005977/1-765 RRPPRGLPST RAADIQSYMD MLSPEPGLPR SRMERPKAPP PPPSFPPPFS 451 500 BACU001115/1-749 PPGTQLPPPP PGCPAPKPPA GLQAADIYTQ TKNKLRHVET EAFKKESSGG bmy_09529T0/1-705 PPGTQLPPPP PGYPAPKPPA GLQAADIYTQ TKNKLRHVET EAFKKEPQWG ENSBTAP00000042910/1-823 PPGTQLPPPP PGFPAPKPPE GLQAADIYLQ TKNKLRHVET EAFKKEP--- ENSP00000367059/1-854 PPGTQLPPPP PGYPAPKPPV GPQAADIYMQ TKNKLRHVET EALKKEL--- ENSTTRP00000005977/1-765 PPGTQMPPPP PGYPAPKPPA GLQAADIYTQ TKNKLRHVET EAFKKEL--- 501 550 BACU001115/1-749 ERVP------ ---------- ---------- ---------- ---------- bmy_09529T0/1-705 APAPLGPRPE PLPVGPTESA LSPRPAGPSP HPRSEDRRVW DRGWPRAPGR ENSBTAP00000042910/1-823 ---------- ---------- ---------- ---------- ---------- ENSP00000367059/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005977/1-765 ---------- ---------- ---------- ---------- ---------- 551 600 BACU001115/1-749 ---------- ---------- ---------- ---RECLPGG RCRRCEGTKS bmy_09529T0/1-705 LRAGKAGGGR GGDVGGGRDK CPKLTPPAVF PQLSSRDGRN GLRRQDSSRK ENSBTAP00000042910/1-823 ---------- ---------- ---------- ---SSRDGRN GLRRQDSGRK ENSP00000367059/1-854 ---------- ---------- ---------- ---SSCDGHD GLRRQDSSRK ENSTTRP00000005977/1-765 ---------- ---------- ---------- ---SSRDGRN GLRRQDSSRK 601 650 BACU001115/1-749 ---FNMMSPT GDNSELLAEI KAGKSLKPTP ---------- ---------- bmy_09529T0/1-705 PRAFSKQPST GDYYRQLGRY -PGEPLAARP GMAHSEEVRA RRPADSHHPL ENSBTAP00000042910/1-823 PRAFSKQPST GDYYRQLGRH -PGEPLVARP GMAHSEE--- ---------- ENSP00000367059/1-854 PRAFSKQPST GDYYRQLGRC -PGETLAARP GMAHSEEVRA RQPARAGCPR ENSTTRP00000005977/1-765 PRAFSKQPST GDYYRQLGRY -PGEPLAARP GMAHSEEVRA RQPAPAGRPG 651 700 BACU001115/1-749 -------QSK GLTTVFSGSG QPASQVPARQ PRGPSLAHGL -YWPEHFLPP bmy_09529T0/1-705 PAPPSQDVQG TAPAAPAAAA APARGPELAA ARSSSVLRGL --WPWLRAAS ENSBTAP00000042910/1-823 ---------- -------AVL LPGNHVHNGC GADPKASREL --PPPPPPPP ENSP00000367059/1-854 LGPAARGSLE GPSAPPQAAL LPGNHVPNGC AADPKASREL PPPPPPPPPP ENSTTRP00000005977/1-765 PGRAARVSLA GPSAPPQAAL LPGNHVHNGC GADPKTSREL -PPPPPPPPP 701 750 BACU001115/1-749 LDGG--APRR YDSLTLDLFM LGYFQLLEMG LSREERKFRH LLCYEMFDRL bmy_09529T0/1-705 LLLVHWQGSR GQVGGGGDAG LTPGQRLLSC LRAGTKSF-- ----NMMSPT ENSBTAP00000042910/1-823 LPEALSSPPP APPLPFEGSG PGCGQRRSSS STGSTKSF-- ----NMMSPT ENSP00000367059/1-854 LPEAASSPPP APPLPLESAG PGCGQRRSSS STGSTKSF-- ----NMMSPT ENSTTRP00000005977/1-765 LPEALSSPPP APPLPFEGSG PGCGQRRSSS STGSSKSF-- ----NMMTPT 751 800 BACU001115/1-749 GSHPWELIRL FHRVVLEEVE AGRRGWSDGF EDLRRQFFGD TPEAETARKE bmy_09529T0/1-705 GDNS------ ---ELLAEIK AGKS------ -------LKP TPQSKGLTTV ENSBTAP00000042910/1-823 GDNS------ ---ELLAEIK AGKS------ -------LKP TPQSKGLTTV ENSP00000367059/1-854 GDNS------ ---ELLAEIK AGKS------ -------LKP TPQSKGLTTV ENSTTRP00000005977/1-765 GDNS------ ---KLLAEIK AGKS------ -------LKS TPQSKGLTPE 801 850 BACU001115/1-749 KVEKEQKEGT DKEEREPTED AAPAQTGDWP EGQPEAPVPA PQPPSPPPPA bmy_09529T0/1-705 ------FSGS GQPASQPDSP LPPA------ -----SPAPS RARSPTPPAA ENSBTAP00000042910/1-823 ------FSGS GQPASQPESP LPPV------ -----SPAPS RARSPTPPAV ENSP00000367059/1-854 ------FSGI GQPAFQPDSP LPSV------ -----SPALS PVRSPTPPAA ENSTTRP00000005977/1-765 ------FSGS GQPASQLNPP LPPV------ -----STAPS PARSPPPPTA 851 900 BACU001115/1-749 APPP------ TPDPPSSEVP AEETLELKGI KRVSSCDPIC VPLSLTHAGP bmy_09529T0/1-705 GSQPLLNGSV APAPPATPAP GVQ-LDVEAL ---------- IPTHDEQGRP ENSBTAP00000042910/1-823 GSQPLLNGSV APAPPATPAP GVQ-LDVEAL ---------- IPTYDEQGRP ENSP00000367059/1-854 GFQPLLNGSL VPVPPTTPAP GVQ-LDVEAL ---------- IPTHDEQGRP ENSTTRP00000005977/1-765 GPKPLLNGSV APAPPATPAP GVQ-LDVEAL ---------- IPTHDEQGRP 901 950 BACU001115/1-749 LGG-GAPPLT PVSQPMLALK PCAVFQEKEE EAWLASMPAW RRDILRKKLE bmy_09529T0/1-705 IPEWKRQVMV RKLQLKMQEE EEQRRKERGG ATEAGGDAAG ERAV------ ENSBTAP00000042910/1-823 IPEWKRQVMV RKLQLKMQEE EEQRRKEEQE EAWLASMPAW RRDILRKKLE ENSP00000367059/1-854 IPEWKRQVMV RKMQLKMQEE EEQRRKEEEE EARLASMPAW RRDLLRKKLE ENSTTRP00000005977/1-765 IPEWKRQVMV RKLQLKMQEE EEQRRKEKEE EAWLASMPAW RRDILRKKLE 951 1000 BACU001115/1-749 EER----KEE ARQKQEEMQR EKEQSEKLRT LGYDESKLAP WQRQIILKKG bmy_09529T0/1-705 ---------- --GEAADARL RREQAGALAA TDHPE----- --------EG ENSBTAP00000042910/1-823 DEREQKRKQE ERQKQEEMQR EKEQSEKLRT LGYDESKLAP WQRQIILKKG ENSP00000367059/1-854 EEREQKRKEE ERQKQEELRR EKEQSEKLRT LGYDESKLAP WQRQVILKKG ENSTTRP00000005977/1-765 EEREQKRKEE ERQKQEEMQR EKEQSEKLRT LGYDESKLAP WQRQIILKKG 1001 1050 BACU001115/1-749 DIAKY bmy_09529T0/1-705 GHR-- ENSBTAP00000042910/1-823 DIAKY ENSP00000367059/1-854 DIAKY ENSTTRP00000005977/1-765 DIAKY