KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:11 2014 Check: 00 .. Name: bmy_21313T0/1-341 Len: 353 Check: 5845 Weight: 1.00 Name: ENSP00000381302/1-271 Len: 353 Check: 8089 Weight: 1.00 Name: ENSTTRP00000001000/1-271 Len: 353 Check: 8480 Weight: 1.00 Name: ENSBTAP00000042923/1-272 Len: 353 Check: 2851 Weight: 1.00 Name: BACU018433/1-254 Len: 353 Check: 4877 Weight: 1.00 // 1 50 bmy_21313T0/1-341 MPTISPRWQV ATGDSTVSVT TSIFPQLELA ENHQPGSLSS PRSPRGRIVH ENSP00000381302/1-271 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001000/1-271 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042923/1-272 ---------- ---------- ---------- ---------- ---------- BACU018433/1-254 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_21313T0/1-341 LSVCRSHLLQ CSALTPLSLF CFSFTEFLDP FQRVIQPEEI WLYKNPLVQS ENSP00000381302/1-271 ---MRELAIE IG-VRALLFG VFVFTEFLDP FQRVIQPEEI WLYKNPLVQS ENSTTRP00000001000/1-271 ---MRELAIE IG-VRALLFG VFVFTEFLDP FQRVIQPEEI WLYKNPLVQS ENSBTAP00000042923/1-272 ---ARRWSLQ AGALMPLSLF CFSFTEFLDP FQRVIQPEEI WLYKNPLVQS BACU018433/1-254 ---------- ---------- -FSFTEFLDP FQRVIQPEEI WLYKNPLVQS 101 150 bmy_21313T0/1-341 DNIPTRLMFA ISFLTPLAVI CVVKIIRRTD KTEIKEAFLA VSLALALNGV ENSP00000381302/1-271 DNIPTRLMFA ISFLTPLAVI CVVKIIRRTD KTEIKEAFLA VSLALALNGV ENSTTRP00000001000/1-271 DNIPTRLMFA ISFLTPLAVI CVVKIIRRTD KTEIKEAFLA VSLALALNGV ENSBTAP00000042923/1-272 DNIPTRLMFA ISFLTPLAVI CVVKIIRRTD KTEIKEAFLA VSLALALNGV BACU018433/1-254 DNVPTRLMFA ISFLTPLAVI CVVKIIRRTD KTEIKEAFLA VSLALALNGV 151 200 bmy_21313T0/1-341 CTNTIKLIVG RPRPDFFYRC FPDGVMNSEM HCTGDPDLVS EGRKSFPSIH ENSP00000381302/1-271 CTNTIKLIVG RPRPDFFYRC FPDGVMNSEM HCTGDPDLVS EGRKSFPSIH ENSTTRP00000001000/1-271 CTNTIKLIVG RPRPDFFYRC FPDGVMNSEM HCTGDPDLVS EGRKSFPSIH ENSBTAP00000042923/1-272 CTNTIKLIVG RPRPDFFYRC FPDGVMNSEM HCTGDPDLVS EGRKSFPSIH BACU018433/1-254 CTNTIKLIVG RPRPDFFYRC FPDGVMNSEM HCTGDPDLVS EGRKSFPSIH 201 250 bmy_21313T0/1-341 SSCKFSGWDT LIPGSCLLIT FFGSLGGEKR A--DTRRSSS AHFSSLVRDC ENSP00000381302/1-271 SSFAFSGLG- -------FTT FY--LAGKLH CFTESGRGKS WRLCAAILP- ENSTTRP00000001000/1-271 SSFAFSGLG- -------FTT FY--LAGKLH CFTESGRGKS WRLCAAILP- ENSBTAP00000042923/1-272 SSFAFSGLG- -------FTT FY--LAGKLH CFTESGRGKS WRLCAAILP- BACU018433/1-254 SSFAFSGLG- -------FTT FY--LAGKLH CFTESGRGKS WRLCAAILP- 251 300 bmy_21313T0/1-341 LAGSCHIHLE KPSVLFSGFL IVANRKPS-- GSW------G LEGSRCPHVV ENSP00000381302/1-271 ---------- ----LYCAMM IALSRMCDYK HHWQDSFVGG VIGLIFAYIC ENSTTRP00000001000/1-271 ---------- ----LYCAMM IALSRMCDYK HHWQDSFVGG VIGLIFAYIC ENSBTAP00000042923/1-272 ---------- ----LYCAMM IALSRMCDYK HHWQDSFVGG VIGLIFAYIC BACU018433/1-254 ---------- ----LYCAMM IALSRMCDYK HHWQDSFVGG VIGLIFAYIC 301 350 bmy_21313T0/1-341 LQNSWFSLNT RTNIDYFWKQ KILFSVYHKQ SNGTALKGSC ARLSANGTSL ENSP00000381302/1-271 YRQHYPPLAN TACHKPYVSL RVPASL---K KEERPTADSA PSLPLEGITE ENSTTRP00000001000/1-271 YRQHYPPLAN TACHKPYVSL RVPPSL---K KDERPTADSA PSLPPEGITE ENSBTAP00000042923/1-272 YRQHYPPLAN TACHKPYVSL RVPPSL---K KDERPTADSA PSLPLEGITE BACU018433/1-254 YRQHYPPLAN TACHKPYVSL RVPPSL---K QDERPTADSA PGLPPEGITE 351 400 bmy_21313T0/1-341 W-- ENSP00000381302/1-271 GPV ENSTTRP00000001000/1-271 GPV ENSBTAP00000042923/1-272 GPV BACU018433/1-254 GPV