KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:12 2014 Check: 00 .. Name: ENSP00000365005/1-1328 Len: 1329 Check: 6186 Weight: 1.00 Name: ENSBTAP00000042949/1-1327 Len: 1329 Check: 5585 Weight: 1.00 Name: bmy_21881T0/1-786 Len: 1329 Check: 9256 Weight: 1.00 Name: ENSTTRP00000014110/1-1263 Len: 1329 Check: 284 Weight: 1.00 // 1 50 ENSP00000365005/1-1328 MSSMPKP-ER HAESLLDICH DTNSSPTDLM TVTKNQNIIL QSISRSEEFD ENSBTAP00000042949/1-1327 MNSMPKPAER HAESLLDICH DTNSSPTDMM TVTKNQNIIL QSIGSSEESD bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 MNSMPKP-ER HAESLLDICH DTNSSPTDMM TVTKNQNIIL QSISSREEFD 51 100 ENSP00000365005/1-1328 QDGDCSHSTL VNEEEDPSGG RQDWQPRTEG VEITVTFPRD VSPPQEMSQE ENSBTAP00000042949/1-1327 QDDDCSHSIL ISEEGDPSGD GQDWQPRTEG VEIIVTFPRD VIHPQEMGQE bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 QDDVCTHSIL ISEKGDPSGD GLDWQPRTE- ---------- ---------- 101 150 ENSP00000365005/1-1328 DLKEKNLINS SLQEWAQAHA VSHPNEIETV ELRKKKLTMR PLVLQKEESS ENSBTAP00000042949/1-1327 ELPENNQITS EHQEWTPAHS VSLPKNIEMV GFRTKMVTTE PLLAKKEERS bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 ------QITS VHQEWVPAHS VSL--NIEMV GSRTNMVTRQ PLLLKKEEHY 151 200 ENSP00000365005/1-1328 RELCNVNLGF LLPRSCLELN ISKSVTREDA PHFLKEQQRK SEEFSTSHMK ENSBTAP00000042949/1-1327 QELFNMNLGF LLPRPHLETI ISKSVAR-DV PHFLKGQPRK SEEFSISDMK bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 L-LCNVNLGF FLPRPCLEPN ISKSVAREDV PHFLKGQPRK SEVFSSFNMK 201 250 ENSP00000365005/1-1328 YSGRSIKFLL PPLSLLPTRS GVLTIPQNHK FPKEKERNIP SLTSFVPKLS ENSBTAP00000042949/1-1327 YSSRRIEFSL PPLSCLPMRS GLLTIPLSHK DQKARERNMP RLVSFIPKFS bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 YSSRRIEFPQ PPLSPLPVRS CLLTIPPNHK D--ERERNIP SFISFIPKLS 251 300 ENSP00000365005/1-1328 VSVRQSDELS PSNEPPGALV KSLMDPTLRS SDGFIWSRNM CSFPKTNHHR ENSBTAP00000042949/1-1327 EPISQSDEFR PSNKQKEAPI KMLADQTLRS FDGSIWSRNM CSFWKAHRHR bmy_21881T0/1-786 ---------- ---------- ---------- ---------M CSFWKAHHHR ENSTTRP00000014110/1-1263 EPVSRSDEFR PSNKQKETPF KVLEDQTLRS FDSSIWARNM CSFWKAHHHR 301 350 ENSP00000365005/1-1328 QCLEKEENWK SKEIEECNKI EITHFEKGQS LVSFENLKEG NIPAVREEDI ENSBTAP00000042949/1-1327 QHLEKEASRK SKEREGCVNI EVFHFEKGQS LVSLENFKEG SFPTGREEDT bmy_21881T0/1-786 QHLETEESRK SKETEGCVNI EISHFEKGQS LASFENFKEG NFPTDREVDI ENSTTRP00000014110/1-1263 QHL--EESRK SKETE-CVNT EISHFEKGQS LVSFENFKEG NFPTDREMDI 351 400 ENSP00000365005/1-1328 DCHGSKTRKP EEENSQYLSS RKNESSVAKN YEQDPEIVCT IPSKFQETQH ENSBTAP00000042949/1-1327 DCHGNELRRA -EENAPSLSS GKKGDSGARN YEQDSEVGYT KPIKFQEALP bmy_21881T0/1-786 DCLGAELRRA -EENTQSLSS GKKEGSVARN YEQDSEAGYI KPVKFQEALR ENSTTRP00000014110/1-1263 DCHGAEVRRA -EENTQSLSS GK-------- YEQDSEAGYI KPVKFQEALH 401 450 ENSP00000365005/1-1328 SEITPSQDEE MRNNKAASKR VSLHKNEAME PNNILEECTV LKSLSSVVFD ENSBTAP00000042949/1-1327 SDIGLSQDEG TKSDKADSKS ASALKGEAIE LDHISEDYTL RKSLSDAVTD bmy_21881T0/1-786 SEITLSQDEG IRNDKADSKT ASAHKGEVIE PNHISEDYTV LKSLSNIVPH ENSTTRP00000014110/1-1263 SEITLSQDEG TRNDKADSKT ASAHKGEVIE PNHISEEYTV LKSLSNIVPH 451 500 ENSP00000365005/1-1328 DPIDKLPEGC SSMETNIKIS IAERAKPEMS RMVPLIHITF PVDGSPKEPV ENSBTAP00000042949/1-1327 GPIEKLSEDH SSMETSTKIS VAETTKPGMN GTVPLIHITF PGDETPKEPA bmy_21881T0/1-786 DPIEKLPEDH RSMETNIKIS VAEAAKPETN GM-------- ---------- ENSTTRP00000014110/1-1263 DPIEKLPEDH RSMETNIKIS VAEATKPETN RMVPLIHITF PGHETPKEPA 501 550 ENSP00000365005/1-1328 IAKPSLQTRK GTIHNNHSVN IPVHQENDKH KMNSHRSKLD SKTKTSKKTP ENSBTAP00000042949/1-1327 ITKPSLQKRK GILRSNSSLN ILAHQENDRH KVKTQRNKLD SKTKTSNRTP bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 ITKPSLQKRK SILHNNSSFH ILADQE-DRH KMKTHRNKLD SKTKASNRTP 551 600 ENSP00000365005/1-1328 QNFVISTEGP IKPTMHKTSI KTQIFPALGL VDPRPWQLPR FQKKMPQIAK ENSBTAP00000042949/1-1327 QNFMISTEVS VKPTTHKTSI KTQVFPALGL VDPRPWQPPK FQRRMPQTER bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 QNFMVSIQSS MKPTMHKTSI KTQVFPALGL VDPRPRQSPK FQKRMPQIEN 601 650 ENSP00000365005/1-1328 KQSTHRTQKP KKQSFPCICK NPGTQKSCVP LSVQPTEPRL NYLDLKYSDM ENSBTAP00000042949/1-1327 KQSAYQALKP KKPSFPCLYK NPGIEKSSVP LSAQPAEPRL NYLDLKYSDM bmy_21881T0/1-786 ---------- ---------- ---------- ---------- ------YSDR ENSTTRP00000014110/1-1263 KQSTYRALKP KKQSFPCICK NPGIKTSSVP LSAQPTEPRL NYLDLKYSDM 651 700 ENSP00000365005/1-1328 FKEINSTANG PGIYEMFGTP VYCHVRETER DENTYYREIC SAPSGRRITN ENSBTAP00000042949/1-1327 FKEINSTANG PGIYEMFGTP VYCHMREAER HENKYHREIC SASSGRCITN bmy_21881T0/1-786 FKEISPTANG PGIYETFRTP VYRQMREAEQ HENKYFREIC SAPSGRCITN ENSTTRP00000014110/1-1263 FKEISSTANG RGIYETFRTP IYRQMREAEQ HENKYFREIC SAPSGRCITN 701 750 ENSP00000365005/1-1328 KCRSSHSERK SNIRTRLSQK KTHMKCPKTS FGIKQEHKVL ISKEKSSKAV ENSBTAP00000042949/1-1327 KCRSSHSERS SNSRNRLSQK RPHSKPPKSS LGIKQKHRSL ISKEKDFQAV bmy_21881T0/1-786 KCRSSHSERT SKSRTRLSQK RPHIKPPKSS LGIKRKRKSL ISKEKRCQAV ENSTTRP00000014110/1-1263 KCRSSHSERT SKSRTRLSQK RPHIKPPKSS LGIKQKHKSL ISKEK----- 751 800 ENSP00000365005/1-1328 HSNLHDIENG DGISEPDWQI KSSGNEFLSS KDEIHPMNLA QTPEQSMKQN ENSBTAP00000042949/1-1327 GSTLQDAENG DGISETGWQI KSSGNDFLSL KDEVQPMNLV QAHEQFTEQN bmy_21881T0/1-786 SS--SDTEN- ---------- ---------- -DEVQPMNMV QTHEQSIEQN ENSTTRP00000014110/1-1263 ----RDTENG DGISEPE-QI KSSGNDFLSS KDEALPMNMV QTHEQSTEQN 801 850 ENSP00000365005/1-1328 EFPPVSDLSI VEEVSMEEST GDRDISNNQI LTTSLRDLQE LEELHHQIPF ENSBTAP00000042949/1-1327 DFFPVSDLSI VEEVSMEESA DEEDISNNQI LATRLRDLHQ LEELRHQTPF bmy_21881T0/1-786 EFLPVSDLSI VEEVSMEESA DEGDISSNQI LATSLRDLRE LEEQVHQTPF ENSTTRP00000014110/1-1263 EFLPVSDLSI VEEV------ DEGDISSNQI LATSLRDLHE LEE-NHQTPF 851 900 ENSP00000365005/1-1328 IPSEDSWAVP SEKNSNKYVQ QEKQNTASLS KVNASRILTN DLEFDSVSDH ENSBTAP00000042949/1-1327 VLSENSWAVP SEKSSNMHVL QEEQKVASPG ETNANQILTN NVDFDSFSDK bmy_21881T0/1-786 VLSEDSWALP SEKSSSKHVL QEKQPIASPG ETNANQIRTN DVEFESVSDK ENSTTRP00000014110/1-1263 VLSENSWALP SEKSSSKHVL QEKQTVVSPG KLIANQILTN DVEFDSVSDK 901 950 ENSP00000365005/1-1328 SKTLTNFSFQ AKQESASSQT YQYWVHYLDH DSLANKSITY QMFGKTLSGT ENSBTAP00000042949/1-1327 SKTLRSFSSQ EKQESVTSQA YQHWALFLDH DSLTNESIPY QTLGKTLNEA bmy_21881T0/1-786 SKTLTSFSSQ EKQESASSQA CQLWAHSLDH DSLANKSIPC QTFGKTLNDA ENSTTRP00000014110/1-1263 SKTLMSFSFQ EKQESASSQA YQHWTHSLDH DSLANKSIPC QTFGKTLNDA 951 1000 ENSP00000365005/1-1328 NSISQEIMDS VNNEELTDEL LGCLAAELLA LDEKDNNSCQ KMANETDPEN ENSBTAP00000042949/1-1327 DSISQEILDS VKNEELTDEL LGCLAAELLA LDEKDDNSCQ IMADETDPES bmy_21881T0/1-786 DSIAQEIPDP ---------- ---------- ---------- ---------- ENSTTRP00000014110/1-1263 DSISQEILDP VKNEESPDEL LGCLAAELLA LDEKDDNSCQ IMADETDPES 1001 1050 ENSP00000365005/1-1328 LNLVLRWRGS TPKEMGRETT KVKIQRHSSG LRIYDREEKF LISNEKKIFS ENSBTAP00000042949/1-1327 RDFVLSKRGN TMQELGRETT NVKIQRYSNG FRRYDKEERF FNPHEKKTFS bmy_21881T0/1-786 ---------- ---------- -----RYSNG FGIYDKEERF FNSHEKKTFS ENSTTRP00000014110/1-1263 RNLALSKRGN TMQELGGETT -VKIQRYSNG FGVCDKEERF FNSHEKKTFS 1051 1100 ENSP00000365005/1-1328 ENSLKSEEPI LWTKGEILGK GAYGTVYCGL TSQGQLIAVK QVALDTSNKL ENSBTAP00000042949/1-1327 ENSLKYEESI LWTKGEILGK GAYGTVYCGL TSQGQLIAVK QVALDTSDKL bmy_21881T0/1-786 ENSLKYEEPI LWTKGEILGK GAYGTVYCGL TCQGQLIAVK QVALDTSDKL ENSTTRP00000014110/1-1263 ENSLKYEEPI LWTKGETLGK GAYGTVYCRL TCQGQLIAVE QVALDTSDKL 1101 1150 ENSP00000365005/1-1328 AAEKEYRKLQ EEVDLLKALK HVNIVAYLGT CLQENTVSIF MEFVPGGSIS ENSBTAP00000042949/1-1327 ATVKEYQKLQ EEVDLLKALK HVNIVAYLGT CLEENILSIF MEFVPGGSIS bmy_21881T0/1-786 TTEKEYRKLQ EEVDLLKALK HVNTVAYLGT CLEENIVSIF MEFEPPGTIS ENSTTRP00000014110/1-1263 TTEKEYRKLQ EEVDLLKALK HVNTVAYLGT CFEENVVSIF MEFVPGGSIS 1151 1200 ENSP00000365005/1-1328 SIINRFGPLP EMVFCKYTKQ ILQGVAYLHE NCVVHRDIKG NNVMLMPTGI ENSBTAP00000042949/1-1327 SIINRFGPLP EMVFCKYTEQ ILQGVAYLHE NCVVHRDIKG NNVMLMPTGI bmy_21881T0/1-786 SIINRFGPLP EMVFCKYTKQ ILQGVAYLHE NCVVHQDIKG NNIMLMPTGI ENSTTRP00000014110/1-1263 SIINHFGPLP EMVFCKYTKQ ILQGVAYLHE NCVVHRDTKG NNIMLMPTGK 1201 1250 ENSP00000365005/1-1328 IKLIDFGCAR RLAWAGLNGT HSDMLKSMHG TPYWMAPEVI NESGYGRKSD ENSBTAP00000042949/1-1327 IKLIDFGCAK RLAWAGLNGT HSDMLKSMHG TPYWMAPEVI NESGYGRKSD bmy_21881T0/1-786 IKLIDFGCVK RLAWAGLNGT HSDMPKSMHG TPYWMALEVI NESGYGRKSD ENSTTRP00000014110/1-1263 IKLTDFGCVK CLAWAGLNGT HSDMLKSMHG TPYWMAPEII NDSGYGWKSD 1251 1300 ENSP00000365005/1-1328 IWSIGCTVFE MATGKPPLAS MDRMAAMFYI GAHRGLMPPL PDHFSENAAD ENSBTAP00000042949/1-1327 IWSIGCTVFE MATGKPPLAS MDRMAAMFYI GAHRGLMPPL PDCFSENAAD bmy_21881T0/1-786 VWSIGCSVFE MATGKPPLAS MDRMAAMFYI GAHRGLMRPL PEHFSENAAD ENSTTRP00000014110/1-1263 VWSIGCTVFE MATGKPPLAS MDRMAAMFYI GAHRGLMPPL PEHFSENAAD 1301 1350 ENSP00000365005/1-1328 FVRMCLTRDQ HERPSALQLL KHSFLERSH ENSBTAP00000042949/1-1327 FVRACLTRDQ HERPSAVQLL KHSFLKRNH bmy_21881T0/1-786 FVHVCLTRDQ HERPSAVRLL KYSFLKRSH ENSTTRP00000014110/1-1263 FVRVCLTGDQ HER-SAFQL- KHSFWKRSH