KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:14 2014 Check: 00 .. Name: ENSTTRP00000015149/1-830 Len: 837 Check: 4311 Weight: 1.00 Name: ENSP00000264012/1-829 Len: 837 Check: 5351 Weight: 1.00 Name: ENSBTAP00000042970/1-828 Len: 837 Check: 3904 Weight: 1.00 Name: bmy_05329T0/1-662 Len: 837 Check: 2058 Weight: 1.00 Name: BACU018133/1-826 Len: 837 Check: 9352 Weight: 1.00 // 1 50 ENSTTRP00000015149/1-830 MGLPSGPLAS LLLRFFLL-- LQVYWLPRAA SEPCRAGFGE AEVTLEARGA ENSP00000264012/1-829 MGLPRGPLAS LLL------- LQVCWLQCAA SEPCRAVFRE AEVTLEAGGA ENSBTAP00000042970/1-828 MGLRGGPLAS LLL------- AQVYWLPRAA SEPCRAGFGE AEVTLEARGA bmy_05329T0/1-662 ---------- ---------- ---------- ---------- ---------- BACU018133/1-826 MGLPSGPLAS LLLRFFLLLQ AQVYWLPRAA SEPCRAGFGE AEVTLEARGA 51 100 ENSTTRP00000015149/1-830 ELERSRARGN VVFTDCPGQE SALLT--DDD FTVLNNKTVQ XXXXXXXXXX ENSP00000264012/1-829 EQEPGQALGK -VFMGCPGQE PALFSTDNDD FTVRNGETVQ ERRSLKERNP ENSBTAP00000042970/1-828 ELEPGQALGK VVFTDCPGQE SALLT--DDD FIVLNDETVQ TKLLIYERKA bmy_05329T0/1-662 ---------- VVFTECPRQE LALLT--DDD FTVLNNKTVQ ------ERKA BACU018133/1-826 ELEPGRARGN VVFMECPGQE SALLT--DDD FTVLNNKTVQ ------ERKA 101 150 ENSTTRP00000015149/1-830 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXKDRGTKIF ENSP00000264012/1-829 LKIFPSKRIL RRHKRDWVVA PISVPENGKG PFPQRLNQLK SNKDRDTKIF ENSBTAP00000042970/1-828 LKISPPAPVL RRRKREWVVP PISVPENGKG PFPQRLNQLK SNKDRGTKIF bmy_05329T0/1-662 LKISPSKRIL RRRKRDWVVP PISVPENGKG PFPQKLHQLK SNKDRGTKIF BACU018133/1-826 LKISPSKRIL RRRKRDWVVP PISVPENGKG PFPQKLHQLK SNKDRGTKIF 151 200 ENSTTRP00000015149/1-830 YSITGPGADS PPESVFTIEK ETSWLLLNKP LDREKIAEYE LFGHAVSENG ENSP00000264012/1-829 YSITGPGADS PPEGVFAVEK ETGWLLLNKP LDREEIAKYE LFGHAVSENG ENSBTAP00000042970/1-828 YSITGPGADS PPEGIFAIEK ETGWLLLNKP LDREKIAKYE LFGHAVSENG bmy_05329T0/1-662 YSITGPGADS PPEGVFTIEK ETGWLVLNKP LDREKIAEYE LFGHAVSENG BACU018133/1-826 YSITGPGADS PPEGVFTIEK ETGWLLLNKP LDREKIAEYE LFGHAVSENG 201 250 ENSTTRP00000015149/1-830 ASVEEPMNIS IIVTDQNDHK PKFTQDVFRG SVLEGVLPGT SVMQVTATDE ENSP00000264012/1-829 ASVEDPMNIS IIVTDQNDHK PKFTQDTFRG SVLEGVLPGT SVMQVTATDE ENSBTAP00000042970/1-828 ASVEDPMNIS IIVTDQNDHK PKFTQDVFRG SVLEGVLPGT SVMQVTATDE bmy_05329T0/1-662 ASVEEPMNIS IIVTDQNDHK PKFTQDVFRG SVLEGVLPGT SVMQVTATDE BACU018133/1-826 ASVEEPMNIS IIVTDQNDHK PKFTQDVFRG SVLEGVLPGT SVMQVTATDE 251 300 ENSTTRP00000015149/1-830 DDAINTYNGV VAYSIHSQEP K---DLMFTV HRSTGTISVV SSGLDREXXX ENSP00000264012/1-829 DDAIYTYNGV VAYSIHSQEP KDPHDLMFTI HRSTGTISVI SSGLDREKVP ENSBTAP00000042970/1-828 DDAVNTYNGV VAYSIHSQEP KDPNDLMFTV HRSTGTISVI SSGLDRERVP bmy_05329T0/1-662 DDAINTYNGV VAYSIHSQEP Q---DLMFTV HRSTGTISVV SSGLDRERVP BACU018133/1-826 DDAINTYNGV VAYSIHSQEP Q---DLMFTV HRSTGTISVV SSGLDRERVP 301 350 ENSTTRP00000015149/1-830 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX YEAHVPENAV ENSP00000264012/1-829 EYTLTIQATD MDGDGSTTTA VAVVEILDAN DNAPMFDPQK YEAHVPENAV ENSBTAP00000042970/1-828 EYTLTIHATD MDGDGSSTTA MAIVEILDAN DNAPVFDPQK YEARVPENTV bmy_05329T0/1-662 EYTLTIQATD MNGDGSSTTA MAVVEILDAN DNAPVFEPQK YEARVPENAV BACU018133/1-826 EYTLTIQATD MNGDGSSTTA MAVVEILDAN DNAPVFAPQK YEARVPENAV 351 400 ENSTTRP00000015149/1-830 GHELQRLTVT DLDAPNSPAW QATYRIVEGD NGDHFTITTH PESNQGILTT ENSP00000264012/1-829 GHEVQRLTVT DLDAPNSPAW RATYLIMGGD DGDHFTITTH PESNQGILTT ENSBTAP00000042970/1-828 SHEVQRLTVT DLDAPNSPAW RATYRIVGGD NGDHFTITTD PESNQGILTT bmy_05329T0/1-662 GHELQRLTVT DLDAPNSPAW QATYRIVEGD NGDHFTVTTH PESNQGILTT BACU018133/1-826 GHELQRLTVT DLDAPNSPAW QATYRIVEGD NGDHFTVTTH PESNQGILTT 401 450 ENSTTRP00000015149/1-830 KKGLDFEAKN QHNLYVEVIN EAPFVVKLPT STATIVVHVE DVNEPPVFVP ENSP00000264012/1-829 RKGLDFEAKN QHTLYVEVTN EAPFVLKLPT STATIVVHVE DVNEAPVFVP ENSBTAP00000042970/1-828 QKGLDFEAKT QHTLYVEVIN EVPFVVKLPT STATVVVLVE DVNEPPVFVP bmy_05329T0/1-662 KKGLDFEAKT QHTLYVEVIN EAPFVVKLPT STATVVVHVE DVNEPPV--- BACU018133/1-826 KKGLDFEAKT QHTLYVEVIN EAPFVVKLPT STATIVVHVE DVNEPPVFVP 451 500 ENSTTRP00000015149/1-830 PSKVIEVQEG ISIGEPVCTY TARDPDNGNQ KIXXXXXXXX XXXXXXXXXX ENSP00000264012/1-829 PSKVVEVQEG IPTGEPVCVY TAEDPDKENQ KISYRILRDP AGWLAMDPDS ENSBTAP00000042970/1-828 PSKVIEIQEG ISTGEPICAY TARDPDKGSQ KISYHILRDP AGWLAMDPDS bmy_05329T0/1-662 ---------- ---------- ---------- ---YHILRDP AGWLAMDPAS BACU018133/1-826 PSKVIEVQEG IPVGEPVCTY TAQDPDKGSQ KISYHILRDP AGWLAMDPAS 501 550 ENSTTRP00000015149/1-830 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSPPTTGTG TLLLTLMDVN ENSP00000264012/1-829 GQVTAVGTLD REDEQFVRNN IYEVMVLAMD NGSPPTTGTG TLLLTLIDVN ENSBTAP00000042970/1-828 GQVTAAGVLD REDEQFVRNN IYEVMVLATD DGSPPTTGTG TLLLTLMDIN bmy_05329T0/1-662 GQVTAAGVLD REDEQFVRTN IYEVMVLATD DGSPPTTGTG TLLLTLMDVN BACU018133/1-826 GQVTAAGVLD REDEQFVRTN IYEVMVLATD DGSPPTTGTG TLLLTLMDVN 551 600 ENSTTRP00000015149/1-830 DHGPVPEPRQ ITICNQSPLP QVLNITDKDL SPHTSPFRAR LTHDSDIYWT ENSP00000264012/1-829 DHGPVPEPRQ ITICNQSPVR QVLNITDKDL SPHTSPFQAQ LTDDSDIYWT ENSBTAP00000042970/1-828 DHGPVPEPRQ ITICNQSPVP QVLNITDKDL SPHTAPFQAQ LTHDSDVYWT bmy_05329T0/1-662 DHGPVPEPRQ ITICNQSPLP QVLNITDKDL SPHTSPFRAW LTHDSDIYWT BACU018133/1-826 DHGPVPEPRQ ITICNQSPLP QVLNITDKDL SPHTSPFRAW LTHDSDIYWT 601 650 ENSTTRP00000015149/1-830 AEVNEKGDTV ALFLKKFLKQ DTYDVHLSLS DHGNKEQLTV IRATVCDCHG ENSP00000264012/1-829 AEVNEEGDTV VLSLKKFLKQ DTYDVHLSLS DHGNKEQLTV IRATVCDCHG ENSBTAP00000042970/1-828 AEVNEKGDAV ALSLKKFLKQ GEYDVHLSLS DHGNKEQLTV IRATVCDCHG bmy_05329T0/1-662 AEVNEKGDTV ALSLKKFLKQ DTYDVHLSLS DHGDKEQLTV IRATVCDCHG BACU018133/1-826 AEVNEKGDTV ALSLKKFLKQ DTYDVHLSLS DHGNKEQLTV IRATVCDCHG 651 700 ENSTTRP00000015149/1-830 HVETCPERWK GSFLLPILGA VLALLXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264012/1-829 HVETCPGPWK GGFILPVLGA VLALLFLLLV LLLLVRKKRK IKEPLLLPED ENSBTAP00000042970/1-828 NMVTCRDPWT WGFLLPILGA ALALLLLLLV LLFLVRKKRK IKEPLLLPED bmy_05329T0/1-662 HVETCPERWK GSFLLPILGA VLALLFLLLV LLFLVRKKRK IKDPLLLPED BACU018133/1-826 HVETCPERWK GSFLLPILGA VLALLFLLLV LLFLVRKKRK IKEPLLLPED 701 750 ENSTTRP00000015149/1-830 XXXXXXXXXX XXXXXXXXXD YDITQLHRGL EARPELVLRN DVVPTFIPTP ENSP00000264012/1-829 DTRDNVFYYG EEGGGEEDQD YDITQLHRGL EARPEVVLRN DVAPTIIPTP ENSBTAP00000042970/1-828 DTRDNVFYYG EEGGGEEDQD YDITQLHRGL EARPEVVLRN DVAPSFIPTP bmy_05329T0/1-662 DTRDNVFYYG EEGGGEEDQD YDITQLHRGL EARPELVLRN DVAPAFIPTP BACU018133/1-826 DTRDNVFYYG EEGGGEEDQD YDITQLHRGL EARPELVLRN DVAPAFIPTP 751 800 ENSTTRP00000015149/1-830 AYRPRPANPD EIGNFIIENL KAANTDPTAP PYDSLLVFDY EGSGSDAASL ENSP00000264012/1-829 MYRPRPANPD EIGNFIIENL KAANTDPTAP PYDTLLVFDY EGSGSDAASL ENSBTAP00000042970/1-828 MYRPRPANPD EIGNFIIENL KAANTDPTAP PYDSLLVFDY EGSGSDAASL bmy_05329T0/1-662 TYRPRPANPD EIGNFIIEK- ---------- ---------- ---------- BACU018133/1-826 TYRPRPANPD EIGNFIIENL KAANTDPTAP PYDSLLVFDY EGSGSDAASL 801 850 ENSTTRP00000015149/1-830 SSLTSSASDQ DQDYDYLNEW GSRFKKLADM YGGGQDD ENSP00000264012/1-829 SSLTSSASDQ DQDYDYLNEW GSRFKKLADM YGGGEDD ENSBTAP00000042970/1-828 SSLTSSTSDQ DQDYNYLNEW GSRFKKLADM YGGGQDD bmy_05329T0/1-662 ---------- ---------- ---------- ------- BACU018133/1-826 SSLTSSASDQ DQDYDYLNEW GSRFKKLADM YGGGQDD